Experiment: TNT (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00745 and IAI47_00750 overlap by 4 nucleotides IAI47_00750 and IAI47_00755 are separated by 35 nucleotides IAI47_00755 and IAI47_00760 overlap by 4 nucleotides IAI47_00760 and IAI47_00765 are separated by 148 nucleotides
IAI47_00745: IAI47_00745 - serine O-acetyltransferase, at 159,085 to 159,906
_00745
IAI47_00750: IAI47_00750 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 159,903 to 160,376
_00750
IAI47_00755: IAI47_00755 - envelope stress sensor histidine kinase CpxA, at 160,412 to 161,791
_00755
IAI47_00760: IAI47_00760 - envelope stress response regulator transcription factor CpxR, at 161,788 to 162,483
_00760
IAI47_00765: IAI47_00765 - cell-envelope stress modulator CpxP, at 162,632 to 163,141
_00765
Position (kb) 160
161
162 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 159.849 kb on + strand at 159.849 kb on + strand at 159.849 kb on + strand at 159.849 kb on + strand at 159.850 kb on - strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.928 kb on + strand at 159.952 kb on + strand, within IAI47_00750 at 159.953 kb on - strand, within IAI47_00750 at 159.953 kb on - strand, within IAI47_00750 at 159.953 kb on - strand, within IAI47_00750 at 159.966 kb on + strand, within IAI47_00750 at 159.966 kb on + strand, within IAI47_00750 at 159.966 kb on + strand, within IAI47_00750 at 159.987 kb on - strand, within IAI47_00750 at 160.090 kb on + strand, within IAI47_00750 at 160.091 kb on - strand, within IAI47_00750 at 160.105 kb on + strand, within IAI47_00750 at 160.189 kb on + strand, within IAI47_00750 at 160.189 kb on + strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.226 kb on - strand, within IAI47_00750 at 160.245 kb on + strand, within IAI47_00750 at 160.246 kb on - strand, within IAI47_00750 at 160.246 kb on - strand, within IAI47_00750 at 160.246 kb on - strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.334 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.371 kb on - strand at 160.371 kb on - strand at 160.371 kb on - strand at 160.376 kb on + strand at 160.376 kb on + strand at 160.376 kb on + strand at 160.376 kb on + strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.414 kb on - strand at 160.431 kb on + strand at 160.431 kb on + strand at 160.431 kb on + strand at 160.466 kb on + strand at 160.486 kb on + strand at 160.486 kb on + strand at 160.487 kb on - strand at 160.582 kb on - strand, within IAI47_00755 at 160.663 kb on + strand, within IAI47_00755 at 160.664 kb on - strand, within IAI47_00755 at 160.701 kb on + strand, within IAI47_00755 at 160.723 kb on + strand, within IAI47_00755 at 160.723 kb on + strand, within IAI47_00755 at 160.724 kb on - strand, within IAI47_00755 at 160.761 kb on + strand, within IAI47_00755 at 160.761 kb on + strand, within IAI47_00755 at 160.762 kb on - strand, within IAI47_00755 at 160.762 kb on - strand, within IAI47_00755 at 160.858 kb on + strand, within IAI47_00755 at 160.894 kb on + strand, within IAI47_00755 at 160.895 kb on - strand, within IAI47_00755 at 160.895 kb on - strand, within IAI47_00755 at 160.927 kb on + strand, within IAI47_00755 at 160.978 kb on + strand, within IAI47_00755 at 160.978 kb on + strand, within IAI47_00755 at 160.979 kb on - strand, within IAI47_00755 at 161.056 kb on + strand, within IAI47_00755 at 161.057 kb on - strand, within IAI47_00755 at 161.116 kb on + strand, within IAI47_00755 at 161.116 kb on + strand, within IAI47_00755 at 161.116 kb on + strand, within IAI47_00755 at 161.117 kb on - strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.208 kb on + strand, within IAI47_00755 at 161.209 kb on - strand, within IAI47_00755 at 161.209 kb on - strand, within IAI47_00755 at 161.209 kb on - strand, within IAI47_00755 at 161.218 kb on + strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.287 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.370 kb on + strand, within IAI47_00755 at 161.371 kb on - strand, within IAI47_00755 at 161.374 kb on + strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.406 kb on - strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.425 kb on - strand, within IAI47_00755 at 161.425 kb on - strand, within IAI47_00755 at 161.494 kb on + strand, within IAI47_00755 at 161.494 kb on + strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand at 161.495 kb on - strand, within IAI47_00755 at 161.528 kb on + strand, within IAI47_00755 at 161.528 kb on + strand, within IAI47_00755 at 161.529 kb on - strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.532 kb on - strand, within IAI47_00755 at 161.532 kb on - strand, within IAI47_00755 at 161.532 kb on - strand, within IAI47_00755 at 161.767 kb on + strand at 161.767 kb on + strand at 161.767 kb on + strand at 161.768 kb on - strand at 161.825 kb on - strand at 161.887 kb on - strand, within IAI47_00760 at 161.887 kb on - strand, within IAI47_00760 at 161.887 kb on - strand, within IAI47_00760 at 161.887 kb on - strand, within IAI47_00760 at 161.893 kb on - strand, within IAI47_00760 at 161.991 kb on - strand, within IAI47_00760 at 162.027 kb on + strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.477 kb on + strand at 162.528 kb on + strand at 162.528 kb on + strand at 162.529 kb on - strand at 162.529 kb on - strand at 162.529 kb on - strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.585 kb on - strand at 162.626 kb on + strand at 162.626 kb on + strand at 162.626 kb on + strand at 162.627 kb on - strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.629 kb on - strand at 162.629 kb on - strand at 162.629 kb on - strand at 162.629 kb on - strand at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765
Per-strain Table
Position Strand Gene LocusTag Fraction TNT (N) remove 159,849 + +0.2 159,849 + -0.5 159,849 + +0.8 159,849 + +0.4 159,850 - +0.5 159,904 + -1.2 159,904 + -1.6 159,904 + +0.8 159,904 + +0.8 159,904 + -1.5 159,905 - +1.9 159,905 - -0.8 159,905 - -0.4 159,905 - +0.9 159,928 + +0.1 159,952 + IAI47_00750 0.10 -0.5 159,953 - IAI47_00750 0.11 -1.6 159,953 - IAI47_00750 0.11 +1.4 159,953 - IAI47_00750 0.11 +2.0 159,966 + IAI47_00750 0.13 +0.8 159,966 + IAI47_00750 0.13 -0.6 159,966 + IAI47_00750 0.13 +1.3 159,987 - IAI47_00750 0.18 -1.1 160,090 + IAI47_00750 0.39 +2.5 160,091 - IAI47_00750 0.40 -0.2 160,105 + IAI47_00750 0.43 +1.1 160,189 + IAI47_00750 0.60 -0.3 160,189 + IAI47_00750 0.60 +0.4 160,190 - IAI47_00750 0.61 +2.3 160,190 - IAI47_00750 0.61 -0.5 160,190 - IAI47_00750 0.61 +2.5 160,190 - IAI47_00750 0.61 -1.2 160,226 - IAI47_00750 0.68 -0.8 160,245 + IAI47_00750 0.72 -0.8 160,246 - IAI47_00750 0.72 -0.7 160,246 - IAI47_00750 0.72 -0.2 160,246 - IAI47_00750 0.72 -1.2 160,325 + IAI47_00750 0.89 -0.9 160,325 + IAI47_00750 0.89 +2.9 160,325 + IAI47_00750 0.89 +0.1 160,325 + IAI47_00750 0.89 +1.0 160,325 + IAI47_00750 0.89 +0.8 160,325 + IAI47_00750 0.89 +1.4 160,325 + IAI47_00750 0.89 -1.4 160,326 - IAI47_00750 0.89 +0.2 160,326 - IAI47_00750 0.89 +1.5 160,326 - IAI47_00750 0.89 -0.3 160,326 - IAI47_00750 0.89 -1.7 160,326 - IAI47_00750 0.89 -0.5 160,326 - IAI47_00750 0.89 -0.4 160,326 - IAI47_00750 0.89 -0.2 160,334 + +0.2 160,370 + +0.8 160,370 + -0.0 160,370 + +1.2 160,370 + -0.2 160,370 + +0.0 160,370 + -0.3 160,371 - +2.5 160,371 - +0.0 160,371 - -0.2 160,376 + -0.0 160,376 + +0.8 160,376 + +3.6 160,376 + +0.9 160,377 - -0.6 160,377 - +0.8 160,377 - -0.3 160,377 - +1.5 160,377 - +3.2 160,406 - -0.2 160,406 - -1.3 160,406 - -1.7 160,414 - +0.2 160,431 + -0.9 160,431 + -0.1 160,431 + +0.0 160,466 + +1.3 160,486 + -2.4 160,486 + -0.8 160,487 - +0.8 160,582 - IAI47_00755 0.12 -4.2 160,663 + IAI47_00755 0.18 +0.8 160,664 - IAI47_00755 0.18 +2.8 160,701 + IAI47_00755 0.21 -1.2 160,723 + IAI47_00755 0.23 -2.8 160,723 + IAI47_00755 0.23 -2.4 160,724 - IAI47_00755 0.23 -1.2 160,761 + IAI47_00755 0.25 -2.2 160,761 + IAI47_00755 0.25 -0.6 160,762 - IAI47_00755 0.25 -2.4 160,762 - IAI47_00755 0.25 -2.1 160,858 + IAI47_00755 0.32 -2.7 160,894 + IAI47_00755 0.35 -4.2 160,895 - IAI47_00755 0.35 -0.8 160,895 - IAI47_00755 0.35 -0.8 160,927 + IAI47_00755 0.37 -2.6 160,978 + IAI47_00755 0.41 -0.8 160,978 + IAI47_00755 0.41 +0.8 160,979 - IAI47_00755 0.41 -0.2 161,056 + IAI47_00755 0.47 +0.3 161,057 - IAI47_00755 0.47 -0.2 161,116 + IAI47_00755 0.51 -1.8 161,116 + IAI47_00755 0.51 -1.1 161,116 + IAI47_00755 0.51 -2.4 161,117 - IAI47_00755 0.51 -3.6 161,177 + IAI47_00755 0.55 +0.8 161,177 + IAI47_00755 0.55 -0.7 161,177 + IAI47_00755 0.55 +0.8 161,177 + IAI47_00755 0.55 +1.8 161,177 + IAI47_00755 0.55 -3.1 161,177 + IAI47_00755 0.55 -3.6 161,208 + IAI47_00755 0.58 -1.8 161,209 - IAI47_00755 0.58 -2.1 161,209 - IAI47_00755 0.58 -3.5 161,209 - IAI47_00755 0.58 -3.1 161,218 + IAI47_00755 0.58 -3.1 161,219 - IAI47_00755 0.58 -2.1 161,219 - IAI47_00755 0.58 -1.5 161,219 - IAI47_00755 0.58 -2.4 161,219 - IAI47_00755 0.58 +2.3 161,219 - IAI47_00755 0.58 -2.9 161,287 + IAI47_00755 0.63 -3.7 161,341 + IAI47_00755 0.67 -2.1 161,341 + IAI47_00755 0.67 -1.5 161,341 + IAI47_00755 0.67 -1.2 161,341 + IAI47_00755 0.67 -2.2 161,342 - IAI47_00755 0.67 +1.8 161,342 - IAI47_00755 0.67 +1.5 161,342 - IAI47_00755 0.67 -2.6 161,342 - IAI47_00755 0.67 -0.7 161,361 + IAI47_00755 0.69 -1.8 161,361 + IAI47_00755 0.69 +0.8 161,361 + IAI47_00755 0.69 -3.5 161,361 + IAI47_00755 0.69 -2.4 161,361 + IAI47_00755 0.69 -2.7 161,361 + IAI47_00755 0.69 -3.3 161,361 + IAI47_00755 0.69 -2.1 161,361 + IAI47_00755 0.69 -2.2 161,362 - IAI47_00755 0.69 -1.6 161,362 - IAI47_00755 0.69 -4.3 161,362 - IAI47_00755 0.69 -2.2 161,362 - IAI47_00755 0.69 -2.8 161,362 - IAI47_00755 0.69 -0.8 161,362 - IAI47_00755 0.69 -2.2 161,362 - IAI47_00755 0.69 -4.2 161,362 - IAI47_00755 0.69 +0.8 161,370 + IAI47_00755 0.69 -0.9 161,371 - IAI47_00755 0.69 -2.8 161,374 + IAI47_00755 0.70 -0.4 161,375 - IAI47_00755 0.70 -3.2 161,375 - IAI47_00755 0.70 -3.9 161,375 - IAI47_00755 0.70 -2.2 161,375 - IAI47_00755 0.70 -2.7 161,375 - IAI47_00755 0.70 +0.8 161,375 - IAI47_00755 0.70 -2.9 161,375 - IAI47_00755 0.70 -2.1 161,375 - IAI47_00755 0.70 -2.4 161,375 - IAI47_00755 0.70 -4.0 161,406 - IAI47_00755 0.72 -3.5 161,424 + IAI47_00755 0.73 +2.8 161,424 + IAI47_00755 0.73 -1.6 161,424 + IAI47_00755 0.73 -2.2 161,424 + IAI47_00755 0.73 -2.3 161,425 - IAI47_00755 0.73 +0.8 161,425 - IAI47_00755 0.73 -1.8 161,494 + IAI47_00755 0.78 -1.9 161,494 + IAI47_00755 0.78 -1.2 161,495 - IAI47_00755 0.78 -1.8 161,495 - IAI47_00755 0.78 -3.1 161,495 - IAI47_00755 0.78 -2.4 161,495 - IAI47_00755 0.78 +2.3 161,495 - +0.8 161,495 - IAI47_00755 0.78 -1.6 161,528 + IAI47_00755 0.81 -1.7 161,528 + IAI47_00755 0.81 -2.3 161,529 - IAI47_00755 0.81 -2.1 161,531 + IAI47_00755 0.81 -1.1 161,531 + IAI47_00755 0.81 -1.8 161,531 + IAI47_00755 0.81 -1.4 161,531 + IAI47_00755 0.81 -1.1 161,531 + IAI47_00755 0.81 -1.8 161,532 - IAI47_00755 0.81 +1.5 161,532 - IAI47_00755 0.81 -1.1 161,532 - IAI47_00755 0.81 -2.5 161,767 + +2.8 161,767 + -3.2 161,767 + -1.1 161,768 - -2.4 161,825 - -2.0 161,887 - IAI47_00760 0.14 +1.1 161,887 - IAI47_00760 0.14 -0.6 161,887 - IAI47_00760 0.14 -2.5 161,887 - IAI47_00760 0.14 -0.6 161,893 - IAI47_00760 0.15 +1.3 161,991 - IAI47_00760 0.29 +3.3 162,027 + IAI47_00760 0.34 -2.2 162,195 - IAI47_00760 0.58 +0.9 162,195 - IAI47_00760 0.58 -1.5 162,195 - IAI47_00760 0.58 +0.1 162,195 - IAI47_00760 0.58 -1.5 162,477 + -1.8 162,528 + +0.2 162,528 + +1.4 162,529 - -0.3 162,529 - +1.1 162,529 - -0.4 162,540 + +4.2 162,540 + +0.0 162,585 - -1.1 162,626 + -1.2 162,626 + +0.2 162,626 + -0.4 162,627 - +0.5 162,628 + -0.5 162,628 + +2.2 162,628 + -0.1 162,628 + -0.2 162,628 + +0.8 162,628 + +3.2 162,629 - +0.8 162,629 - +2.0 162,629 - +2.2 162,629 - +1.5 162,697 + IAI47_00765 0.13 -0.8 162,697 + IAI47_00765 0.13 +1.5 162,697 + IAI47_00765 0.13 +1.3 162,697 + IAI47_00765 0.13 -0.1 162,697 + IAI47_00765 0.13 +0.9 162,697 + IAI47_00765 0.13 -1.1 162,697 + IAI47_00765 0.13 -0.2 162,697 + IAI47_00765 0.13 -0.1 162,697 + IAI47_00765 0.13 +4.2 162,698 - IAI47_00765 0.13 -0.6 162,698 - IAI47_00765 0.13 +0.5 162,698 - IAI47_00765 0.13 -0.6 162,698 - IAI47_00765 0.13 +0.5 162,751 + IAI47_00765 0.23 -1.0 162,751 + IAI47_00765 0.23 -0.2 162,751 + IAI47_00765 0.23 +0.4 162,751 + IAI47_00765 0.23 +0.1 162,751 + IAI47_00765 0.23 -0.0 162,752 - IAI47_00765 0.24 +2.9 162,752 - IAI47_00765 0.24 -0.8 162,752 - IAI47_00765 0.24 +0.1 162,752 - IAI47_00765 0.24 +0.6 162,752 - IAI47_00765 0.24 +1.1 162,752 - IAI47_00765 0.24 +0.3
Or see this region's nucleotide sequence