Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03500

Experiment: McCas_H2_complete Sulfaquinoxaline 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03495 and MMP_RS03500 are separated by 368 nucleotidesMMP_RS03500 and MMP_RS03505 are separated by 29 nucleotidesMMP_RS03505 and MMP_RS03510 are separated by 12 nucleotides MMP_RS03495: MMP_RS03495 - Na/Pi cotransporter family protein, at 655,139 to 656,764 _RS03495 MMP_RS03500: MMP_RS03500 - 30S ribosomal protein S2, at 657,133 to 657,795 _RS03500 MMP_RS03505: MMP_RS03505 - hypothetical protein, at 657,825 to 658,433 _RS03505 MMP_RS03510: MMP_RS03510 - 30S ribosomal protein S3ae, at 658,446 to 659,123 _RS03510 Position (kb) 657 658Strain fitness (log2 ratio) -2 -1 0 1 2at 656.178 kb on + strand, within MMP_RS03495at 656.268 kb on + strand, within MMP_RS03495at 656.307 kb on + strand, within MMP_RS03495at 656.340 kb on + strand, within MMP_RS03495at 656.713 kb on + strandat 656.747 kb on - strandat 656.749 kb on - strandat 656.750 kb on + strandat 656.750 kb on + strandat 656.778 kb on + strandat 656.779 kb on - strandat 656.795 kb on - strandat 656.835 kb on - strandat 656.838 kb on - strandat 656.914 kb on - strandat 656.926 kb on - strandat 656.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Sulfaquinoxaline 0.1 mM
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656,178 + MMP_RS03495 0.64 +2.1
656,268 + MMP_RS03495 0.69 +0.3
656,307 + MMP_RS03495 0.72 +0.9
656,340 + MMP_RS03495 0.74 +0.6
656,713 + +1.0
656,747 - +0.9
656,749 - +2.2
656,750 + +1.2
656,750 + +1.7
656,778 + +2.1
656,779 - +1.9
656,795 - +1.1
656,835 - +1.8
656,838 - +1.1
656,914 - +0.4
656,926 - -1.4
656,977 - -2.1

Or see this region's nucleotide sequence