Strain Fitness in Pantoea sp. MT58 around IAI47_17975

Experiment: TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TNT (N)
3,816,779	-				+0.5
3,816,785	+				+3.7
3,816,834	-				-0.1
3,816,843	+				-2.9
3,816,843	+				-2.7
3,816,844	-				-0.1
3,816,875	+				+0.1
3,816,876	-				-1.3
3,816,876	-				-1.1
3,816,876	-				-1.4
3,816,883	+				-0.3
3,816,886	-				-1.1
3,816,900	-				-1.5
3,816,900	-				-0.4
3,816,912	-				-2.6
3,816,939	+				-0.7
3,816,940	-				+0.3
3,816,974	-				-1.2
3,816,994	-				+0.3
3,816,994	-				-1.8
3,816,995	+				-2.1
3,817,012	+				-1.5
3,817,044	+				+1.5
3,817,051	+				+0.4
3,817,074	+				-0.3
3,817,085	+				+1.3
3,817,094	+				-0.1
3,817,095	-				-2.1
3,817,097	+				-1.8
3,817,097	+				-1.8
3,817,160	-				-0.8
3,817,160	-				-1.1
3,817,172	+				-1.1
3,817,172	+				+0.4
3,817,172	+				+0.6
3,817,174	+				-1.5
3,817,174	+				-0.2
3,817,229	+				+0.2
3,817,229	+				-1.1
3,817,283	+				-2.7
3,817,295	+				-1.4
3,817,295	+				-0.8
3,817,295	+				-1.9
3,817,296	-				-3.6
3,817,376	+		IAI47_17970	0.36	-1.7
3,817,376	+		IAI47_17970	0.36	-1.8
3,817,376	+		IAI47_17970	0.36	-1.1
3,817,377	-		IAI47_17970	0.36	-1.5
3,817,377	-		IAI47_17970	0.36	-0.9
3,817,377	-		IAI47_17970	0.36	-4.0
3,817,377	-		IAI47_17970	0.36	-0.8
3,817,377	-		IAI47_17970	0.36	-0.3
3,817,421	+		IAI47_17970	0.53	-0.7
3,817,421	+		IAI47_17970	0.53	-1.6
3,817,421	+		IAI47_17970	0.53	-0.4
3,817,421	+		IAI47_17970	0.53	-3.2
3,817,421	+		IAI47_17970	0.53	+0.0
3,817,422	-		IAI47_17970	0.53	-0.8
3,817,422	-		IAI47_17970	0.53	-0.5
3,817,422	-		IAI47_17970	0.53	-1.7
3,817,422	-		IAI47_17970	0.53	-2.5
3,817,500	-		IAI47_17970	0.84	+0.4
3,817,505	+		IAI47_17970	0.86	-0.2
3,817,506	-		IAI47_17970	0.86	-1.2
3,817,566	-				-1.9
3,817,576	-				-0.6
3,817,604	+				-0.7
3,817,604	+				-0.5
3,817,604	+				+0.2
3,817,605	-				-2.1
3,817,674	+				+0.5
3,817,674	+				-0.6
3,817,675	-				-1.1
3,817,675	-				-2.5
3,817,675	-				-1.2
3,817,680	+				+0.5
3,817,680	+				-1.8
3,817,680	+				-0.5
3,817,681	-				-1.4
3,817,681	-				-0.1
3,817,701	-				-2.7
3,817,706	+				+1.5
3,817,706	+				-0.2
3,817,721	+				-1.3
3,817,721	+				+1.2
3,817,721	+				+0.7
3,817,721	+				+1.3
3,817,721	+				-1.8
3,817,721	+				-0.6
3,817,722	-				-2.5
3,817,722	-				-1.7
3,817,722	-				-0.7
3,817,783	+				+1.1
3,817,783	+				-1.9
3,817,784	-				-3.1
3,817,784	-				-0.9
3,817,880	+		IAI47_17975	0.22	-3.3
3,817,880	+		IAI47_17975	0.22	-1.1
3,817,880	+		IAI47_17975	0.22	-1.2
3,817,893	-		IAI47_17975	0.24	-2.1
3,817,893	-		IAI47_17975	0.24	-2.1
3,817,893	-		IAI47_17975	0.24	-0.7
3,817,938	-		IAI47_17975	0.31	-0.1
3,817,989	+		IAI47_17975	0.39	-1.3
3,817,989	+		IAI47_17975	0.39	-1.5
3,817,990	-		IAI47_17975	0.39	+0.2
3,817,990	-		IAI47_17975	0.39	-2.3
3,817,990	-		IAI47_17975	0.39	-2.2
3,817,990	-		IAI47_17975	0.39	-3.2
3,818,086	+		IAI47_17975	0.54	-2.1
3,818,086	+		IAI47_17975	0.54	-2.3
3,818,086	+		IAI47_17975	0.54	-0.9
3,818,086	+		IAI47_17975	0.54	-0.5
3,818,137	+		IAI47_17975	0.62	-0.5
3,818,137	+		IAI47_17975	0.62	-3.4
3,818,138	-		IAI47_17975	0.62	-1.1
3,818,138	-		IAI47_17975	0.62	-1.1
3,818,353	+				-1.1
3,818,353	+				+1.5
3,818,354	-				-2.8
3,818,354	-				+0.5
3,818,354	-				-0.9
3,818,354	-				-0.2
3,818,354	-				-2.1
3,818,359	+				-0.9
3,818,359	+				-1.4
3,818,360	-				-0.9
3,818,360	-				-0.8
3,818,395	-				-1.1
3,818,395	-				-1.3
3,818,463	+		IAI47_17980	0.11	-1.8
3,818,463	+		IAI47_17980	0.11	-0.4
3,818,463	+		IAI47_17980	0.11	-2.1
3,818,463	+		IAI47_17980	0.11	+0.5
3,818,463	+		IAI47_17980	0.11	-0.1
3,818,464	-		IAI47_17980	0.11	-1.0
3,818,464	-		IAI47_17980	0.11	-2.3
3,818,568	+		IAI47_17980	0.25	-3.4
3,818,568	+		IAI47_17980	0.25	-1.1
3,818,569	-		IAI47_17980	0.25	-0.3
3,818,609	-		IAI47_17980	0.31	-2.1
3,818,609	-		IAI47_17980	0.31	-0.9
3,818,706	+		IAI47_17980	0.44	-4.0
3,818,706	+		IAI47_17980	0.44	-1.2
3,818,707	-		IAI47_17980	0.44	-2.2
3,818,707	-		IAI47_17980	0.44	-0.3
3,818,707	-		IAI47_17980	0.44	-0.8
3,818,707	-		IAI47_17980	0.44	-1.7
3,818,707	-		IAI47_17980	0.44	-0.2
3,818,756	+		IAI47_17980	0.51	-1.0
3,818,756	+		IAI47_17980	0.51	-0.8
3,818,757	-		IAI47_17980	0.51	-0.4
3,818,791	+		IAI47_17980	0.55	-2.1
3,818,791	+		IAI47_17980	0.55	-0.2
3,818,791	+		IAI47_17980	0.55	-0.4
3,818,791	+		IAI47_17980	0.55	-0.8
3,818,791	+		IAI47_17980	0.55	-2.5
3,818,791	+		IAI47_17980	0.55	-0.4
3,818,791	+		IAI47_17980	0.55	-1.8
3,818,791	+		IAI47_17980	0.55	+2.1
3,818,791	+		IAI47_17980	0.55	-1.9
3,818,792	-		IAI47_17980	0.55	+1.2
3,818,792	-		IAI47_17980	0.55	-2.0
3,818,792	-		IAI47_17980	0.55	-1.1
3,818,792	-		IAI47_17980	0.55	+0.6
3,818,800	+		IAI47_17980	0.56	-0.9
3,818,800	+		IAI47_17980	0.56	-1.3
3,818,801	-		IAI47_17980	0.57	-2.2
3,818,893	+		IAI47_17980	0.69	-0.8
3,818,894	-		IAI47_17980	0.69	-1.8
3,818,894	-		IAI47_17980	0.69	+0.3
3,818,986	+		IAI47_17980	0.81	-0.3
3,818,986	+		IAI47_17980	0.81	-2.7
3,818,987	-		IAI47_17980	0.82	-1.8
3,818,987	-		IAI47_17980	0.82	-1.9
3,819,028	-		IAI47_17980	0.87	-0.2
3,819,028	-		IAI47_17980	0.87	+1.5
3,819,315	+				+2.1
3,819,315	+				-2.4
3,819,316	-				+0.5
3,819,321	+				-0.2
3,819,321	+				-0.9
3,819,321	+				-1.1
3,819,321	+				-1.8
3,819,322	-				-1.1
3,819,325	-				-0.5
3,819,325	-				+0.6
3,819,325	-				-1.7
3,819,325	-				-0.8
3,819,325	-				-2.1
3,819,362	+		IAI47_17985	0.11	+1.6
3,819,362	+		IAI47_17985	0.11	+1.5
3,819,362	+		IAI47_17985	0.11	-2.1
3,819,363	-		IAI47_17985	0.11	+0.3
3,819,372	+		IAI47_17985	0.12	-1.6
3,819,373	-		IAI47_17985	0.12	+1.0
3,819,374	+		IAI47_17985	0.12	-2.1
3,819,374	+		IAI47_17985	0.12	-3.3
3,819,374	+		IAI47_17985	0.12	-1.7
3,819,375	-		IAI47_17985	0.12	-2.5
3,819,375	-		IAI47_17985	0.12	+0.7
3,819,375	-		IAI47_17985	0.12	-1.9