Strain Fitness in Pantoea sp. MT58 around IAI47_11700

Experiment: TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TNT (N)
2,479,511	-		IAI47_11690	0.72	+1.4
2,479,511	-		IAI47_11690	0.72	+0.1
2,479,511	-		IAI47_11690	0.72	+1.4
2,479,744	+		IAI47_11690	0.90	-0.5
2,479,744	+		IAI47_11690	0.90	-0.6
2,479,745	-		IAI47_11690	0.90	-0.1
2,479,757	+				+0.2
2,479,757	+				-0.2
2,479,758	-				+0.4
2,479,758	-				+2.1
2,479,758	-				+0.8
2,479,758	-				+1.4
2,479,758	-				+0.8
2,479,758	-				+1.8
2,479,758	-				+2.3
2,479,758	-				-0.4
2,479,758	-				-0.3
2,479,758	-				+0.3
2,479,758	-				-1.3
2,479,759	+				-0.8
2,479,759	+				-1.8
2,479,759	+				-0.8
2,479,760	-				+0.1
2,479,760	-				-0.6
2,479,804	+				+2.4
2,479,880	+				-1.2
2,479,880	+				+0.7
2,479,880	+				-1.7
2,479,880	+				+0.8
2,479,880	+				+0.8
2,479,881	-				+1.9
2,479,881	-				+0.4
2,479,881	-				+1.6
2,479,881	-				+0.9
2,479,881	-				+0.2
2,479,881	-				+1.3
2,479,912	+				+0.0
2,479,912	+				+2.0
2,479,951	+		IAI47_11695	0.13	-0.2
2,479,951	+		IAI47_11695	0.13	+0.6
2,479,952	-		IAI47_11695	0.13	+0.5
2,479,952	-		IAI47_11695	0.13	+0.7
2,480,153	+		IAI47_11695	0.54	-0.4
2,480,153	+		IAI47_11695	0.54	+0.8
2,480,219	+		IAI47_11695	0.67	+0.4
2,480,286	+		IAI47_11695	0.81	+1.3
2,480,286	+		IAI47_11695	0.81	-2.1
2,480,286	+		IAI47_11695	0.81	+0.2
2,480,286	+		IAI47_11695	0.81	+0.7
2,480,286	+		IAI47_11695	0.81	+0.6
2,480,287	-		IAI47_11695	0.81	-1.5
2,480,287	-		IAI47_11695	0.81	+0.9
2,480,287	-		IAI47_11695	0.81	+0.2
2,480,287	-		IAI47_11695	0.81	-0.7
2,480,287	-		IAI47_11695	0.81	+2.0
2,480,287	-		IAI47_11695	0.81	-1.1
2,480,287	-		IAI47_11695	0.81	-0.3
2,480,289	+		IAI47_11695	0.81	-0.2
2,480,289	+		IAI47_11695	0.81	+1.5
2,480,290	-		IAI47_11695	0.82	+0.1
2,480,290	-		IAI47_11695	0.82	+0.7
2,480,290	-		IAI47_11695	0.82	+0.3
2,480,305	+		IAI47_11695	0.85	+0.5
2,480,314	+		IAI47_11695	0.86	+0.3
2,480,314	+		IAI47_11695	0.86	-1.4
2,480,315	-		IAI47_11695	0.87	-0.7
2,480,315	-		IAI47_11695	0.87	-1.4
2,480,345	+				-1.0
2,480,346	-				-0.0
2,480,346	-				+0.3
2,480,346	-				+0.0
2,480,405	+				-0.9
2,480,405	+				+1.4
2,480,406	-				+0.3
2,480,406	-				+1.2
2,480,409	+				+1.5
2,480,409	+				-0.5
2,480,410	-				-2.1
2,480,410	-				+1.1
2,480,490	+		IAI47_11700	0.14	-1.1
2,480,508	+		IAI47_11700	0.17	-0.9
2,480,509	-		IAI47_11700	0.18	-0.2
2,480,509	-		IAI47_11700	0.18	-0.6
2,480,523	+		IAI47_11700	0.20	-0.9
2,480,523	+		IAI47_11700	0.20	-1.5
2,480,524	-		IAI47_11700	0.20	-1.1
2,480,524	-		IAI47_11700	0.20	-1.5
2,480,524	-		IAI47_11700	0.20	-1.7
2,480,524	-		IAI47_11700	0.20	-0.8
2,480,524	-		IAI47_11700	0.20	-2.6
2,480,537	+		IAI47_11700	0.22	-0.3
2,480,538	-		IAI47_11700	0.22	+0.1
2,480,538	-		IAI47_11700	0.22	-0.1
2,480,573	+		IAI47_11700	0.28	-4.1
2,480,573	+		IAI47_11700	0.28	+2.3
2,480,586	+		IAI47_11700	0.30	-1.5
2,480,586	+		IAI47_11700	0.30	-3.0
2,480,587	-		IAI47_11700	0.31	-3.7
2,480,587	-		IAI47_11700	0.31	-0.7
2,480,587	-		IAI47_11700	0.31	-3.5
2,480,587	-		IAI47_11700	0.31	-0.6
2,480,587	-		IAI47_11700	0.31	-1.5
2,480,719	-		IAI47_11700	0.53	-3.7
2,480,721	-		IAI47_11700	0.53	-0.7
2,480,721	-		IAI47_11700	0.53	+0.3
2,480,762	+		IAI47_11700	0.60	-0.8
2,480,762	+		IAI47_11700	0.60	-1.6
2,480,763	-		IAI47_11700	0.60	-2.8
2,480,792	+		IAI47_11700	0.65	-0.7
2,480,792	+		IAI47_11700	0.65	+0.9
2,480,793	-		IAI47_11700	0.65	+0.7
2,480,842	+		IAI47_11700	0.73	+0.5
2,480,850	-		IAI47_11700	0.75	-1.4
2,480,866	+		IAI47_11700	0.77	+1.5
2,480,867	-		IAI47_11700	0.78	-0.5
2,480,922	+		IAI47_11700	0.87	+0.1
2,480,922	+		IAI47_11700	0.87	-0.4
2,480,922	+		IAI47_11700	0.87	-1.6
2,480,957	-				+1.3
2,480,957	-				-1.1
2,481,004	+				-0.1
2,481,004	+				+0.5
2,481,151	-				+0.5
2,481,154	+				+0.3
2,481,157	-				-0.9
2,481,157	-				+0.0
2,481,157	-				-2.1
2,481,160	+				-1.4
2,481,161	-				+1.6
2,481,182	+				-1.8
2,481,182	+				-1.3
2,481,182	+				-0.0
2,481,183	-				+0.0
2,481,183	-				-0.6
2,481,183	-				+2.9
2,481,218	-				-0.9
2,481,283	+				-0.5
2,481,284	-				-1.1
2,481,286	+				+0.6
2,481,305	-				+0.3
2,481,330	-				-1.5
2,481,344	-				+1.0
2,481,359	-				+1.5
2,481,456	+				-0.9
2,481,456	+				-1.7
2,481,457	-				-0.8
2,481,457	-				-0.5
2,481,457	-				+0.5
2,481,494	+				-2.5
2,481,494	+				+0.1
2,481,494	+				-0.7
2,481,494	+				-0.2
2,481,495	-				+0.8
2,481,495	-				+0.1
2,481,500	+				-2.8
2,481,500	+				+0.5
2,481,501	-				-0.7
2,481,501	-				-1.2
2,481,513	+				-1.1
2,481,558	+				-0.7
2,481,569	+				+0.8
2,481,582	-				+0.0
2,481,596	-				-0.2
2,481,608	+				-0.6
2,481,609	-				+0.1
2,481,632	+				-0.3
2,481,668	+				-0.7
2,481,694	+				-1.1
2,481,699	+				+0.3
2,481,699	+				-1.2
2,481,700	-				+1.3
2,481,708	+				+0.2
2,481,708	+				-1.1
2,481,765	+				+0.2
2,481,792	-				+0.9
2,481,792	-				-1.4
2,481,811	-				-0.4
2,481,811	-				+1.0
2,481,878	+				-0.2
2,481,878	+				-3.0
2,481,891	-				+0.8
2,481,956	+				+0.5
2,481,962	+				+0.5
2,481,962	+				-1.3
2,481,963	-				-0.3
2,481,995	-				+2.3
2,481,995	-				-0.6