Strain Fitness in Pantoea sp. MT58 around IAI47_08905

Experiment: TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TNT (N)
1,880,051	+		IAI47_08900	0.28	+0.8
1,880,126	-		IAI47_08900	0.34	+0.1
1,880,126	-		IAI47_08900	0.34	+2.2
1,880,126	-		IAI47_08900	0.34	-0.0
1,880,149	+		IAI47_08900	0.36	+1.4
1,880,150	-		IAI47_08900	0.36	+0.5
1,880,150	-		IAI47_08900	0.36	+0.6
1,880,150	-		IAI47_08900	0.36	+0.0
1,880,150	-		IAI47_08900	0.36	-0.4
1,880,216	+		IAI47_08900	0.42	-0.1
1,880,216	+		IAI47_08900	0.42	+0.2
1,880,216	+		IAI47_08900	0.42	+1.2
1,880,217	-		IAI47_08900	0.42	+3.9
1,880,217	-		IAI47_08900	0.42	-2.2
1,880,217	-		IAI47_08900	0.42	-1.8
1,880,217	-		IAI47_08900	0.42	-1.0
1,880,217	-		IAI47_08900	0.42	+1.4
1,880,219	+		IAI47_08900	0.42	-0.2
1,880,219	+		IAI47_08900	0.42	-0.4
1,880,219	+		IAI47_08900	0.42	-0.0
1,880,219	+		IAI47_08900	0.42	-0.2
1,880,219	+		IAI47_08900	0.42	-1.5
1,880,219	+		IAI47_08900	0.42	-1.8
1,880,220	-		IAI47_08900	0.42	+2.2
1,880,220	-		IAI47_08900	0.42	+0.2
1,880,220	-		IAI47_08900	0.42	+2.0
1,880,241	+		IAI47_08900	0.44	+1.9
1,880,241	+		IAI47_08900	0.44	-1.3
1,880,241	+		IAI47_08900	0.44	+2.3
1,880,242	-		IAI47_08900	0.44	+0.8
1,880,242	-		IAI47_08900	0.44	+0.1
1,880,242	-		IAI47_08900	0.44	-0.2
1,880,242	-		IAI47_08900	0.44	-0.4
1,880,320	-		IAI47_08900	0.51	+0.9
1,880,320	-		IAI47_08900	0.51	-1.5
1,880,354	-		IAI47_08900	0.54	-1.4
1,880,354	-		IAI47_08900	0.54	+0.6
1,880,383	+		IAI47_08900	0.56	-1.6
1,880,383	+		IAI47_08900	0.56	-0.4
1,880,383	+		IAI47_08900	0.56	+0.7
1,880,384	-		IAI47_08900	0.56	+0.7
1,880,384	-		IAI47_08900	0.56	-0.7
1,880,399	-		IAI47_08900	0.57	-0.8
1,880,413	-		IAI47_08900	0.58	+0.6
1,880,474	+		IAI47_08900	0.64	-1.2
1,880,523	+		IAI47_08900	0.68	-1.2
1,880,570	-		IAI47_08900	0.72	+1.2
1,880,587	+		IAI47_08900	0.73	+0.9
1,880,587	+		IAI47_08900	0.73	-0.2
1,880,588	-		IAI47_08900	0.73	+1.3
1,880,588	-		IAI47_08900	0.73	-0.1
1,880,660	-		IAI47_08900	0.79	-1.8
1,880,660	-		IAI47_08900	0.79	+0.4
1,880,677	-		IAI47_08900	0.81	+0.5
1,880,677	-		IAI47_08900	0.81	-0.4
1,880,677	-		IAI47_08900	0.81	-0.0
1,880,715	+		IAI47_08900	0.84	-0.3
1,880,715	+		IAI47_08900	0.84	+1.7
1,880,715	+		IAI47_08900	0.84	-0.3
1,880,715	+		IAI47_08900	0.84	+0.5
1,880,715	+		IAI47_08900	0.84	-0.0
1,880,715	+		IAI47_08900	0.84	+3.6
1,880,715	+		IAI47_08900	0.84	-0.8
1,880,716	-		IAI47_08900	0.84	-1.6
1,880,716	-		IAI47_08900	0.84	+0.2
1,880,716	-		IAI47_08900	0.84	+1.0
1,880,806	+				-0.1
1,880,845	-				-1.3
1,880,845	-				+0.0
1,880,882	+				-0.2
1,880,882	+				-0.0
1,880,882	+				-0.4
1,880,882	+				+0.2
1,880,883	-				+0.6
1,880,883	-				-0.7
1,880,885	+				-0.8
1,880,885	+				+0.2
1,880,886	-				+0.6
1,880,886	-				-0.2
1,880,896	+				-0.6
1,880,909	-				+0.4
1,880,977	-				+2.2
1,880,977	-				-0.8
1,881,011	+				-0.7
1,881,011	+				-0.1
1,881,012	-				+0.1
1,881,027	+				-0.6
1,881,028	-				-1.4
1,881,035	+				-1.3
1,881,035	+				+1.0
1,881,035	+				+0.2
1,881,035	+				-2.7
1,881,036	-				-0.7
1,881,036	-				+0.2
1,881,036	-				-1.0
1,881,036	-				+1.0
1,881,038	+				-1.3
1,881,038	+				-0.2
1,881,038	+				-2.0
1,881,039	-				+0.2
1,881,059	-				+0.6
1,881,059	-				+0.4
1,881,059	-				-0.3
1,881,059	-				+2.6
1,881,059	-				+1.9
1,881,059	-				-1.9
1,881,059	-				-0.0
1,881,059	-				-1.0
1,881,059	-				-0.6
1,881,059	-				-0.8
1,881,119	+				-1.8
1,881,119	+				-0.6
1,881,119	+				-0.9
1,881,120	-				-1.6
1,881,120	-				-1.0
1,881,120	-				-0.4
1,881,135	-				-1.6
1,881,135	-				-0.5
1,881,149	+				-1.0
1,881,157	-				-1.4
1,881,162	+				-1.2
1,881,163	-				-0.2
1,881,163	-				+0.1
1,881,212	+		IAI47_08905	0.12	-1.2
1,881,213	-		IAI47_08905	0.12	-0.8
1,881,216	-		IAI47_08905	0.12	-1.4
1,881,216	-		IAI47_08905	0.12	-1.2
1,881,216	-		IAI47_08905	0.12	-2.2
1,881,233	+		IAI47_08905	0.14	-1.5
1,881,304	+		IAI47_08905	0.18	-1.2
1,881,304	+		IAI47_08905	0.18	-2.0
1,881,305	-		IAI47_08905	0.18	-1.8
1,881,313	+		IAI47_08905	0.19	-1.3
1,881,345	+		IAI47_08905	0.21	-0.7
1,881,346	-		IAI47_08905	0.21	-0.7
1,881,346	-		IAI47_08905	0.21	+0.3
1,881,346	-		IAI47_08905	0.21	+0.1
1,881,351	+		IAI47_08905	0.22	-1.1
1,881,352	-		IAI47_08905	0.22	-0.0
1,881,427	+		IAI47_08905	0.27	-0.0
1,881,428	-		IAI47_08905	0.27	-2.1
1,881,521	+		IAI47_08905	0.33	+3.2
1,881,521	+		IAI47_08905	0.33	-0.3
1,881,521	+		IAI47_08905	0.33	+1.4
1,881,522	-		IAI47_08905	0.33	+1.0
1,881,522	-		IAI47_08905	0.33	+0.7
1,881,554	+		IAI47_08905	0.35	-0.4
1,881,554	+		IAI47_08905	0.35	+1.6
1,881,554	+		IAI47_08905	0.35	-0.8
1,881,554	+		IAI47_08905	0.35	+0.5
1,881,554	+		IAI47_08905	0.35	-1.0
1,881,555	-		IAI47_08905	0.36	-0.7
1,881,555	-		IAI47_08905	0.36	-0.7
1,881,555	-		IAI47_08905	0.36	+1.2
1,881,691	-		IAI47_08905	0.45	-1.3
1,881,697	-		IAI47_08905	0.45	-1.1
1,881,697	-		IAI47_08905	0.45	-1.8
1,881,697	-		IAI47_08905	0.45	+0.6
1,881,711	+		IAI47_08905	0.46	-2.3
1,881,716	+		IAI47_08905	0.46	-0.7
1,881,716	+		IAI47_08905	0.46	-1.2
1,881,717	-		IAI47_08905	0.47	-1.2
1,881,717	-		IAI47_08905	0.47	-1.9
1,881,717	-		IAI47_08905	0.47	-2.4
1,881,738	+		IAI47_08905	0.48	-2.8
1,881,739	-		IAI47_08905	0.48	-2.2
1,881,739	-		IAI47_08905	0.48	-0.6
1,881,739	-		IAI47_08905	0.48	-0.4
1,881,815	+		IAI47_08905	0.53	-0.9
1,881,815	+		IAI47_08905	0.53	+0.4
1,881,816	-		IAI47_08905	0.53	-3.2
1,881,816	-		IAI47_08905	0.53	+1.9
1,881,816	-		IAI47_08905	0.53	-1.4
1,881,816	-		IAI47_08905	0.53	-2.6
1,881,816	-		IAI47_08905	0.53	-1.9
1,881,816	-		IAI47_08905	0.53	-2.0
1,881,831	+		IAI47_08905	0.54	-0.5
1,881,832	-		IAI47_08905	0.54	+1.4
1,881,832	-		IAI47_08905	0.54	-0.7
1,881,868	-		IAI47_08905	0.57	-4.1
1,881,868	-		IAI47_08905	0.57	-1.2
1,881,868	-		IAI47_08905	0.57	-0.8
1,881,936	+		IAI47_08905	0.61	-0.7
1,881,953	+		IAI47_08905	0.63	+0.7
1,881,953	+		IAI47_08905	0.63	-0.8
1,881,987	-		IAI47_08905	0.65	-0.9
1,882,018	-		IAI47_08905	0.67	-0.4
1,882,103	+		IAI47_08905	0.73	-1.3
1,882,103	+		IAI47_08905	0.73	-0.4
1,882,103	+		IAI47_08905	0.73	-2.2
1,882,103	+		IAI47_08905	0.73	-3.4
1,882,103	+		IAI47_08905	0.73	-2.0
1,882,103	+		IAI47_08905	0.73	-0.2
1,882,103	+		IAI47_08905	0.73	-1.5
1,882,103	+		IAI47_08905	0.73	+0.0
1,882,103	+		IAI47_08905	0.73	-0.1
1,882,103	+		IAI47_08905	0.73	-1.0
1,882,104	-		IAI47_08905	0.73	-1.8
1,882,104	-		IAI47_08905	0.73	-0.3
1,882,104	-		IAI47_08905	0.73	-2.6
1,882,104	-		IAI47_08905	0.73	-0.4
1,882,104	-		IAI47_08905	0.73	-1.2
1,882,104	-		IAI47_08905	0.73	-1.0
1,882,104	-		IAI47_08905	0.73	-2.4
1,882,104	-		IAI47_08905	0.73	-0.4
1,882,104	-		IAI47_08905	0.73	-0.7
1,882,104	-		IAI47_08905	0.73	-0.2
1,882,189	+		IAI47_08905	0.79	+0.0
1,882,190	-		IAI47_08905	0.79	-1.3
1,882,190	-		IAI47_08905	0.79	+1.3
1,882,198	-		IAI47_08905	0.79	+0.9
1,882,210	-		IAI47_08905	0.80	-2.5
1,882,239	+		IAI47_08905	0.82	-0.9
1,882,239	+		IAI47_08905	0.82	-0.6
1,882,239	+		IAI47_08905	0.82	-0.4
1,882,239	+		IAI47_08905	0.82	-0.0
1,882,239	+		IAI47_08905	0.82	-0.7
1,882,239	+		IAI47_08905	0.82	+1.0
1,882,239	+		IAI47_08905	0.82	+1.1
1,882,239	+		IAI47_08905	0.82	-0.2
1,882,239	+		IAI47_08905	0.82	+0.4
1,882,239	+		IAI47_08905	0.82	-1.8
1,882,239	+		IAI47_08905	0.82	-0.2
1,882,239	+		IAI47_08905	0.82	+1.1
1,882,240	-		IAI47_08905	0.82	-0.1
1,882,240	-		IAI47_08905	0.82	-2.3
1,882,240	-		IAI47_08905	0.82	-1.9
1,882,240	-		IAI47_08905	0.82	-1.7
1,882,240	-		IAI47_08905	0.82	-0.9
1,882,240	-		IAI47_08905	0.82	-1.6
1,882,240	-		IAI47_08905	0.82	+0.2
1,882,240	-		IAI47_08905	0.82	-0.4
1,882,240	-		IAI47_08905	0.82	-0.6
1,882,240	-		IAI47_08905	0.82	-2.1
1,882,240	-		IAI47_08905	0.82	-1.8
1,882,240	-		IAI47_08905	0.82	-1.8
1,882,240	-		IAI47_08905	0.82	-0.7
1,882,241	+		IAI47_08905	0.82	+0.6
1,882,242	-		IAI47_08905	0.82	-2.2
1,882,242	-		IAI47_08905	0.82	-0.4
1,882,242	-		IAI47_08905	0.82	-0.2
1,882,242	-		IAI47_08905	0.82	-2.7
1,882,256	-		IAI47_08905	0.83	-1.6
1,882,256	-		IAI47_08905	0.83	-0.7
1,882,256	-		IAI47_08905	0.83	+0.2
1,882,256	-		IAI47_08905	0.83	-1.2
1,882,279	+		IAI47_08905	0.85	-0.9
1,882,279	+		IAI47_08905	0.85	-0.0
1,882,280	-		IAI47_08905	0.85	-2.0
1,882,280	-		IAI47_08905	0.85	-0.6
1,882,280	-		IAI47_08905	0.85	-1.2
1,882,280	-		IAI47_08905	0.85	-0.6
1,882,287	+		IAI47_08905	0.85	-1.0
1,882,287	+		IAI47_08905	0.85	-1.1
1,882,288	-		IAI47_08905	0.85	-0.9
1,882,288	-		IAI47_08905	0.85	-1.1
1,882,288	-		IAI47_08905	0.85	+0.8
1,882,290	+		IAI47_08905	0.86	-2.3
1,882,290	+		IAI47_08905	0.86	-2.2
1,882,291	-		IAI47_08905	0.86	-0.7
1,882,291	-		IAI47_08905	0.86	-0.7
1,882,291	-		IAI47_08905	0.86	-1.1
1,882,291	-		IAI47_08905	0.86	-0.6
1,882,310	+		IAI47_08905	0.87	-1.2
1,882,332	+		IAI47_08905	0.88	-0.5
1,882,333	-		IAI47_08905	0.89	-1.5
1,882,333	-		IAI47_08905	0.89	-0.6
1,882,339	-		IAI47_08905	0.89	+0.8
1,882,356	+				-3.0
1,882,356	+				-1.5
1,882,356	+				+1.6
1,882,357	-				-1.7
1,882,363	+				-1.4
1,882,364	-				-3.3
1,882,364	-				-4.3
1,882,364	-				-1.9
1,882,364	-				+0.9
1,882,395	+				-1.5
1,882,484	-				-0.6
1,882,484	-				-1.5
1,882,491	+				-0.4
1,882,492	-				-1.4
1,882,492	-				-0.8
1,882,492	-				-0.7
1,882,492	-				-0.7
1,882,492	-				-0.3
1,882,492	-				-0.8
1,882,492	-				-0.6
1,882,492	-				+2.1
1,882,492	-				-2.0
1,882,492	-				-0.4
1,882,492	-				-2.4
1,882,492	-				-2.8
1,882,523	+				-1.3
1,882,523	+				+0.9
1,882,688	+				-0.7
1,882,688	+				-0.0
1,882,689	-				+2.9
1,882,699	+				-1.6
1,882,699	+				-3.5
1,882,699	+				+0.4
1,882,699	+				-2.5
1,882,712	+				-0.3
1,882,713	-				+0.9
1,882,713	-				-1.6
1,882,759	+				+2.0
1,882,781	-				+2.3
1,882,789	+				+0.2
1,882,790	-				-0.4
1,882,805	+				+1.7
1,882,805	+				-0.2
1,882,807	+				+0.9
1,882,808	-				+2.6
1,882,812	-				+2.9
1,882,812	-				-1.0
1,882,832	+				-0.2
1,882,916	-		IAI47_08910	0.17	+0.6
1,882,920	+		IAI47_08910	0.18	-0.6
1,882,920	+		IAI47_08910	0.18	+0.3
1,882,921	-		IAI47_08910	0.19	-1.1
1,882,976	-		IAI47_08910	0.42	+1.0
1,882,976	-		IAI47_08910	0.42	+1.4
1,882,976	-		IAI47_08910	0.42	+0.8
1,882,976	-		IAI47_08910	0.42	+1.0
1,882,976	-		IAI47_08910	0.42	+0.1
1,883,003	-		IAI47_08910	0.54	-0.6
1,883,006	+		IAI47_08910	0.55	+0.0
1,883,017	+		IAI47_08910	0.60	+0.2
1,883,095	+				-1.7
1,883,127	+				+0.0
1,883,135	+				-0.9
1,883,135	+				-1.5
1,883,135	+				+0.6
1,883,136	-				+0.4
1,883,143	+				+1.3
1,883,144	-				+1.0
1,883,144	-				+0.5
1,883,144	-				-0.6
1,883,150	-				+1.0
1,883,154	+				+1.3
1,883,154	+				-1.4
1,883,190	+				-0.7
1,883,191	-				-0.8
1,883,230	+				+1.6
1,883,230	+				+1.6
1,883,230	+				+0.3
1,883,230	+				-1.4
1,883,231	-				-0.5
1,883,231	-				-0.7
1,883,231	-				-0.2
1,883,377	-		IAI47_08915	0.11	-0.9
1,883,420	-		IAI47_08915	0.13	+0.1
1,883,420	-		IAI47_08915	0.13	-1.4