Strain Fitness in Pantoea sp. MT58 around IAI47_06630

Experiment: TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TNT (N)
1,380,711	+		IAI47_06625	0.16	+0.8
1,380,712	+		IAI47_06625	0.16	-0.3
1,380,712	+		IAI47_06625	0.16	+0.4
1,380,712	+		IAI47_06625	0.16	+1.3
1,380,712	+		IAI47_06625	0.16	-0.4
1,380,713	-		IAI47_06625	0.17	-0.4
1,380,713	-		IAI47_06625	0.17	-0.1
1,380,713	-		IAI47_06625	0.17	+1.0
1,380,730	+		IAI47_06625	0.20	-0.6
1,380,731	-		IAI47_06625	0.20	+1.3
1,380,731	-		IAI47_06625	0.20	-0.2
1,380,744	+		IAI47_06625	0.22	+0.6
1,380,744	+		IAI47_06625	0.22	+0.2
1,380,744	+		IAI47_06625	0.22	+0.4
1,380,744	+		IAI47_06625	0.22	-0.8
1,380,744	+		IAI47_06625	0.22	+0.7
1,380,744	+		IAI47_06625	0.22	+2.0
1,380,744	+		IAI47_06625	0.22	-1.5
1,380,745	-		IAI47_06625	0.22	-0.2
1,380,804	-		IAI47_06625	0.32	+0.8
1,380,809	-		IAI47_06625	0.33	+1.0
1,380,850	+		IAI47_06625	0.40	-0.4
1,380,851	-		IAI47_06625	0.41	-0.8
1,380,851	-		IAI47_06625	0.41	-0.2
1,380,851	-		IAI47_06625	0.41	+0.3
1,380,861	-		IAI47_06625	0.42	-0.5
1,380,861	-		IAI47_06625	0.42	-3.7
1,380,861	-		IAI47_06625	0.42	-0.4
1,380,896	+		IAI47_06625	0.48	+0.0
1,380,896	+		IAI47_06625	0.48	-1.5
1,380,897	-		IAI47_06625	0.49	+0.3
1,380,897	-		IAI47_06625	0.49	-0.7
1,380,897	-		IAI47_06625	0.49	-0.4
1,380,897	-		IAI47_06625	0.49	+0.2
1,380,946	-		IAI47_06625	0.57	-1.0
1,380,969	+		IAI47_06625	0.61	-0.0
1,380,970	-		IAI47_06625	0.61	+3.2
1,380,991	+		IAI47_06625	0.65	+2.8
1,380,991	+		IAI47_06625	0.65	-1.3
1,380,991	+		IAI47_06625	0.65	+0.9
1,380,992	-		IAI47_06625	0.65	+0.9
1,380,992	-		IAI47_06625	0.65	-0.4
1,380,992	-		IAI47_06625	0.65	-0.4
1,380,992	-		IAI47_06625	0.65	-0.3
1,380,992	-		IAI47_06625	0.65	+1.6
1,380,992	-		IAI47_06625	0.65	-0.9
1,380,992	-		IAI47_06625	0.65	-1.4
1,380,992	-		IAI47_06625	0.65	-0.5
1,381,004	-		IAI47_06625	0.67	-1.3
1,381,044	-		IAI47_06625	0.74	-0.7
1,381,063	+		IAI47_06625	0.77	-0.7
1,381,082	-		IAI47_06625	0.81	-0.1
1,381,099	+		IAI47_06625	0.84	-0.3
1,381,099	+		IAI47_06625	0.84	-0.0
1,381,100	-		IAI47_06625	0.84	-0.4
1,381,105	+		IAI47_06625	0.85	+0.6
1,381,106	-		IAI47_06625	0.85	-0.7
1,381,106	-		IAI47_06625	0.85	-0.6
1,381,106	-		IAI47_06625	0.85	-0.3
1,381,111	+		IAI47_06625	0.86	-0.4
1,381,111	+		IAI47_06625	0.86	-0.4
1,381,111	+		IAI47_06625	0.86	+0.5
1,381,111	+		IAI47_06625	0.86	-1.2
1,381,112	-		IAI47_06625	0.86	-0.1
1,381,112	-		IAI47_06625	0.86	+0.9
1,381,112	-		IAI47_06625	0.86	-0.2
1,381,112	-		IAI47_06625	0.86	-1.0
1,381,112	-		IAI47_06625	0.86	-0.5
1,381,112	-		IAI47_06625	0.86	-0.2
1,381,112	-		IAI47_06625	0.86	+0.3
1,381,112	-		IAI47_06625	0.86	+2.5
1,381,112	-		IAI47_06625	0.86	+0.5
1,381,160	+				-0.4
1,381,161	-				-0.2
1,381,161	-				+0.7
1,381,161	-				+0.5
1,381,161	-				-0.7
1,381,161	-				-0.4
1,381,161	-				+1.4
1,381,161	-				-1.1
1,381,161	-				-1.3
1,381,162	+				+1.6
1,381,162	+				+0.3
1,381,162	+				+1.0
1,381,162	+				-1.4
1,381,162	+				+0.8
1,381,162	+				+1.2
1,381,162	+				+0.8
1,381,162	+				-1.1
1,381,162	+				+1.4
1,381,162	+				-0.8
1,381,162	+				+1.9
1,381,162	+				+0.0
1,381,162	+				-1.4
1,381,162	+				-0.0
1,381,162	+				+0.2
1,381,162	+				-1.6
1,381,162	+				+0.6
1,381,163	-				+0.6
1,381,163	-				-0.2
1,381,163	-				-0.6
1,381,163	-				+0.1
1,381,163	-				-0.1
1,381,163	-				+0.9
1,381,163	-				+0.2
1,381,163	-				-0.9
1,381,163	-				+0.0
1,381,163	-				+0.2
1,381,163	-				+1.6
1,381,163	-				-0.2
1,381,163	-				+0.3
1,381,163	-				+0.7
1,381,163	-				-0.6
1,381,163	-				+0.2
1,381,163	-				+0.2
1,381,163	-				+0.4
1,381,163	-				+3.0
1,381,163	-				-0.3
1,381,163	-				+0.0
1,381,163	-				-0.9
1,381,163	-				+0.5
1,381,163	-				+0.4
1,381,163	-				-1.5
1,381,163	-				-0.0
1,381,164	+				+0.2
1,381,164	+				+1.5
1,381,164	+				-0.5
1,381,164	+				-0.2
1,381,164	+				-0.3
1,381,165	-				+0.2
1,381,165	-				+0.3
1,381,165	-				-0.5
1,381,165	-				+0.7
1,381,165	-				+0.8
1,381,165	-				-0.3
1,381,165	-				-0.9
1,381,165	-				-3.1
1,381,165	-				-0.8
1,381,172	+				+0.5
1,381,193	+				+1.3
1,381,193	+				-0.1
1,381,194	-				+0.1
1,381,260	+				+1.2
1,381,260	+				-0.6
1,381,261	-				+1.4
1,381,261	-				-0.2
1,381,261	-				-0.4
1,381,264	-				-0.5
1,381,277	+				-0.8
1,381,290	+				+0.1
1,381,291	-				+2.2
1,381,294	+				-0.3
1,381,295	-				+1.7
1,381,295	-				+0.6
1,381,295	-				+0.1
1,381,295	-				+0.0
1,381,297	+				+0.3
1,381,298	-				-0.6
1,381,353	+				-2.9
1,381,353	+				+0.4
1,381,353	+				+1.3
1,381,354	-				-0.3
1,381,375	-				+0.8
1,381,375	-				+0.3
1,381,375	-				-0.2
1,381,382	+				+0.2
1,381,383	-				+0.7
1,381,383	-				-0.8
1,381,383	-				+0.3
1,381,406	+				-3.8
1,381,407	-				+1.2
1,381,418	+				-0.5
1,381,418	+				+1.8
1,381,420	+				-0.1
1,381,421	-				-0.9
1,381,459	+				+0.4
1,381,460	-				+0.1
1,381,464	+				+2.2
1,381,465	-				+0.6
1,381,484	+				+0.6
1,381,484	+				-0.3
1,381,485	-				-1.4
1,381,527	+				+1.4
1,381,528	-				-0.1
1,381,528	-				+1.4
1,381,528	-				+1.0
1,381,551	+				+0.5
1,381,551	+				-0.2
1,381,551	+				+0.6
1,381,552	-				-0.5
1,381,552	-				+0.6
1,381,586	+				-2.6
1,381,598	+				-0.5
1,381,598	+				+1.0
1,381,625	-				+0.0
1,381,633	-				-1.1
1,381,656	-				-0.5
1,381,669	+				+0.6
1,381,677	+				-0.4
1,381,678	-				-0.6
1,381,700	-				-1.5
1,381,706	+				+0.2
1,381,707	-				-1.0
1,381,707	-				+1.6
1,381,719	+				+0.0
1,381,719	+				+2.9
1,381,720	-				-0.4
1,381,720	-				+0.9
1,381,721	+				+0.9
1,381,721	+				+0.6
1,381,721	+				+0.4
1,381,721	+				-1.0
1,381,721	+				-0.4
1,381,722	-				-0.1
1,381,722	-				-1.1
1,381,722	-				-0.0
1,381,722	-				-0.9
1,381,725	+				-0.8
1,381,733	-				+2.6
1,381,752	+				-2.1
1,381,752	+				-2.6
1,381,759	+				-2.6
1,381,760	-				-0.3
1,381,760	-				-1.0
1,381,777	+		IAI47_06630	0.10	-0.1
1,381,777	+		IAI47_06630	0.10	-1.0
1,381,778	-		IAI47_06630	0.10	+0.6
1,381,778	-		IAI47_06630	0.10	-4.8
1,381,778	-		IAI47_06630	0.10	+1.6
1,381,778	-		IAI47_06630	0.10	-0.4
1,381,830	+		IAI47_06630	0.18	-1.9
1,381,831	-		IAI47_06630	0.18	+0.2
1,381,836	+		IAI47_06630	0.19	+0.4
1,381,876	+		IAI47_06630	0.24	-0.4
1,381,876	+		IAI47_06630	0.24	-3.2
1,381,876	+		IAI47_06630	0.24	-1.8
1,381,877	-		IAI47_06630	0.24	-0.7
1,381,887	+		IAI47_06630	0.26	-2.3
1,381,887	+		IAI47_06630	0.26	-2.4
1,381,902	+		IAI47_06630	0.28	-2.4
1,381,903	-		IAI47_06630	0.28	-2.6
1,381,922	+		IAI47_06630	0.31	-2.7
1,381,923	-		IAI47_06630	0.31	-1.0
1,381,932	+		IAI47_06630	0.32	-0.4
1,381,932	+		IAI47_06630	0.32	-1.3
1,381,932	+		IAI47_06630	0.32	-3.0
1,381,933	-		IAI47_06630	0.32	+0.3
1,381,933	-		IAI47_06630	0.32	-1.8
1,381,959	+		IAI47_06630	0.36	-0.7
1,381,999	-		IAI47_06630	0.42	-1.2
1,382,014	+		IAI47_06630	0.44	-0.9
1,382,015	-		IAI47_06630	0.44	-3.5
1,382,077	+		IAI47_06630	0.53	-0.2
1,382,077	+		IAI47_06630	0.53	-0.9
1,382,077	+		IAI47_06630	0.53	-2.5
1,382,077	+		IAI47_06630	0.53	-1.1
1,382,077	+		IAI47_06630	0.53	+2.9
1,382,077	+		IAI47_06630	0.53	-0.4
1,382,078	-		IAI47_06630	0.53	-1.1
1,382,094	+		IAI47_06630	0.55	-2.2
1,382,094	+		IAI47_06630	0.55	-1.1
1,382,094	+		IAI47_06630	0.55	+0.6
1,382,095	-		IAI47_06630	0.55	+0.6
1,382,095	-		IAI47_06630	0.55	-1.2
1,382,124	+		IAI47_06630	0.59	-1.4
1,382,124	+		IAI47_06630	0.59	-1.4
1,382,125	-		IAI47_06630	0.59	-1.6
1,382,183	+		IAI47_06630	0.68	-1.7
1,382,183	+		IAI47_06630	0.68	-2.3
1,382,183	+		IAI47_06630	0.68	+0.2
1,382,184	-		IAI47_06630	0.68	-0.9
1,382,184	-		IAI47_06630	0.68	-1.2
1,382,184	-		IAI47_06630	0.68	-2.4
1,382,184	-		IAI47_06630	0.68	-1.2
1,382,239	-		IAI47_06630	0.75	-0.6
1,382,280	+		IAI47_06630	0.81	-1.4
1,382,280	+		IAI47_06630	0.81	-1.4
1,382,304	+		IAI47_06630	0.85	-1.7
1,382,343	-				-1.8
1,382,343	-				+0.3
1,382,343	-				-2.5
1,382,343	-				-2.1
1,382,362	+				-2.3
1,382,362	+				-1.4
1,382,362	+				-1.2
1,382,362	+				+0.9
1,382,362	+				-3.2
1,382,362	+				-1.2
1,382,362	+				-0.8
1,382,362	+				+0.6
1,382,362	+				-2.1
1,382,362	+				-1.7
1,382,363	-				-1.0
1,382,363	-				-2.1
1,382,363	-				-0.8
1,382,363	-				-1.3
1,382,363	-				+0.2
1,382,363	-				-1.3
1,382,363	-				-1.3
1,382,363	-				-1.1
1,382,363	-				-1.5
1,382,388	+				-3.6
1,382,388	+				-2.6
1,382,388	+				-0.8
1,382,389	-				-2.1
1,382,389	-				-2.9
1,382,389	-				-0.9
1,382,391	+				+0.2
1,382,391	+				-2.5
1,382,391	+				-0.7
1,382,391	+				-2.6
1,382,391	+				-2.1
1,382,391	+				-0.2
1,382,391	+				-1.6
1,382,391	+				+1.3
1,382,391	+				-0.7
1,382,391	+				-0.7
1,382,391	+				-1.9
1,382,391	+				-1.9
1,382,392	-				-2.8
1,382,392	-				-1.9
1,382,392	-				-1.4
1,382,392	-				-1.4
1,382,392	-				-2.1
1,382,394	+				-3.2
1,382,395	-				-3.9
1,382,395	-				-0.2
1,382,395	-				-0.6
1,382,395	-				-2.1
1,382,395	-				+1.3
1,382,395	-				-1.7
1,382,416	+				-0.4
1,382,417	-				-1.6
1,382,447	+				+0.1
1,382,447	+				-0.7
1,382,447	+				+0.1
1,382,447	+				-0.6
1,382,447	+				-1.6
1,382,447	+				-1.3
1,382,448	-				-0.5
1,382,448	-				-0.1
1,382,448	-				+0.8
1,382,448	-				-0.1
1,382,448	-				-0.9
1,382,456	+				+0.4
1,382,462	-				+0.5
1,382,462	-				+0.5
1,382,488	+				-1.5
1,382,530	-				-0.9
1,382,530	-				+0.4
1,382,589	+		IAI47_06635	0.14	+0.8
1,382,589	+		IAI47_06635	0.14	-0.6
1,382,590	-		IAI47_06635	0.14	+0.2
1,382,590	-		IAI47_06635	0.14	-0.1
1,382,592	+		IAI47_06635	0.14	-0.1
1,382,593	-		IAI47_06635	0.14	+2.1
1,382,593	-		IAI47_06635	0.14	-0.2
1,382,593	-		IAI47_06635	0.14	-0.3
1,382,620	+		IAI47_06635	0.17	+1.4
1,382,621	-		IAI47_06635	0.17	-0.0
1,382,628	+		IAI47_06635	0.18	+0.8
1,382,628	+		IAI47_06635	0.18	-1.2
1,382,628	+		IAI47_06635	0.18	-0.1
1,382,629	-		IAI47_06635	0.18	+0.5
1,382,718	+		IAI47_06635	0.27	-1.2
1,382,720	+		IAI47_06635	0.27	+0.2
1,382,720	+		IAI47_06635	0.27	-0.6
1,382,720	+		IAI47_06635	0.27	-0.6
1,382,720	+		IAI47_06635	0.27	+0.1
1,382,721	-		IAI47_06635	0.27	+1.0
1,382,721	-		IAI47_06635	0.27	+1.6
1,382,721	-		IAI47_06635	0.27	+0.3
1,382,773	+		IAI47_06635	0.33	-0.1
1,382,843	+		IAI47_06635	0.40	+0.4
1,382,843	+		IAI47_06635	0.40	+0.6
1,382,844	-		IAI47_06635	0.40	-0.1
1,382,970	+		IAI47_06635	0.53	+0.2
1,382,970	+		IAI47_06635	0.53	+0.8
1,382,971	-		IAI47_06635	0.53	-0.0
1,382,971	-		IAI47_06635	0.53	+0.3
1,382,971	-		IAI47_06635	0.53	+0.8
1,382,973	+		IAI47_06635	0.53	-0.3
1,382,973	+		IAI47_06635	0.53	-0.4
1,382,973	+		IAI47_06635	0.53	+0.8
1,382,973	+		IAI47_06635	0.53	+0.1
1,382,979	+		IAI47_06635	0.54	+0.6
1,382,979	+		IAI47_06635	0.54	+2.1
1,382,980	-		IAI47_06635	0.54	-1.9
1,382,980	-		IAI47_06635	0.54	-0.1
1,382,982	+		IAI47_06635	0.54	-0.6
1,382,982	+		IAI47_06635	0.54	+0.2
1,382,982	+		IAI47_06635	0.54	-0.4
1,382,982	+		IAI47_06635	0.54	+1.1
1,382,982	+		IAI47_06635	0.54	-0.6
1,382,982	+		IAI47_06635	0.54	+1.9
1,382,983	-		IAI47_06635	0.54	+0.7
1,382,983	-		IAI47_06635	0.54	-1.4
1,382,983	-		IAI47_06635	0.54	-1.6
1,382,983	-		IAI47_06635	0.54	-3.4
1,382,983	-		IAI47_06635	0.54	-0.8
1,383,030	+		IAI47_06635	0.59	-0.5
1,383,030	+		IAI47_06635	0.59	-0.5
1,383,031	-		IAI47_06635	0.59	+0.3
1,383,099	-		IAI47_06635	0.66	+0.2
1,383,112	+		IAI47_06635	0.68	+0.1
1,383,112	+		IAI47_06635	0.68	+0.1
1,383,112	+		IAI47_06635	0.68	+0.4
1,383,113	-		IAI47_06635	0.68	+0.2
1,383,113	-		IAI47_06635	0.68	-0.2
1,383,113	-		IAI47_06635	0.68	+1.1
1,383,192	+		IAI47_06635	0.76	+1.7
1,383,192	+		IAI47_06635	0.76	+0.3
1,383,192	+		IAI47_06635	0.76	-0.2
1,383,193	-		IAI47_06635	0.76	-0.7
1,383,193	-		IAI47_06635	0.76	+0.6
1,383,193	-		IAI47_06635	0.76	+2.0