Strain Fitness in Pantoea sp. MT58 around IAI47_06355

Experiment: TNT (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TNT (N)
1,291,304	+				+0.8
1,291,305	-				-0.0
1,291,305	-				-0.7
1,291,383	+				+1.8
1,291,383	+				+1.6
1,291,383	+				+0.4
1,291,383	+				-0.3
1,291,383	+				-0.7
1,291,383	+				+0.4
1,291,383	+				+0.6
1,291,383	+				-0.1
1,291,383	+				+0.8
1,291,383	+				+0.4
1,291,384	-				+0.8
1,291,384	-				+1.5
1,291,384	-				-0.2
1,291,384	-				+3.3
1,291,384	-				+0.1
1,291,384	-				-0.7
1,291,384	-				-0.4
1,291,384	-				-0.4
1,291,460	+				-0.4
1,291,461	-				+0.2
1,291,461	-				+0.1
1,291,461	-				+0.0
1,291,494	-				-0.6
1,291,494	-				-0.0
1,291,499	+				-1.5
1,291,500	-				+0.1
1,291,500	-				+1.3
1,291,500	-				+1.0
1,291,500	-				-0.2
1,291,503	+				+0.2
1,291,504	-				-1.3
1,291,542	+				-2.7
1,291,571	-				-0.0
1,291,571	-				+1.0
1,291,601	+				+1.0
1,291,601	+				-1.7
1,291,602	-				+1.1
1,291,610	+				-0.9
1,291,621	+				-0.7
1,291,623	+				+1.9
1,291,623	+				+1.9
1,291,623	+				-0.7
1,291,638	-				-0.3
1,291,683	-				+0.1
1,291,694	+				-0.6
1,291,694	+				+1.2
1,291,694	+				-0.6
1,291,694	+				+0.9
1,291,695	-				+0.0
1,291,695	-				-0.2
1,291,695	-				-0.1
1,291,695	-				-0.2
1,291,695	-				+0.1
1,291,698	+				+0.2
1,291,698	+				+0.2
1,291,698	+				-0.6
1,291,699	-				-0.1
1,291,699	-				-0.5
1,291,705	+				+1.4
1,291,705	+				+0.1
1,291,706	-				-0.7
1,291,715	+				-0.8
1,291,715	+				+0.1
1,291,716	-				+0.3
1,291,716	-				-0.2
1,291,730	+				-1.3
1,291,730	+				+2.2
1,291,730	+				+1.6
1,291,731	-				+1.4
1,291,731	-				-1.0
1,291,784	+				+0.4
1,291,784	+				-0.7
1,291,784	+				+0.0
1,291,785	-				-0.4
1,291,785	-				+0.1
1,291,785	-				-0.3
1,291,785	-				+2.2
1,291,785	-				-1.1
1,291,785	-				-0.6
1,291,785	-				-1.1
1,291,788	+				+0.6
1,291,789	-				+0.8
1,291,789	-				-0.3
1,291,795	+				+1.3
1,291,795	+				-0.3
1,291,805	+				-0.3
1,291,805	+				-2.6
1,291,805	+				+0.0
1,291,805	+				-0.6
1,291,805	+				+0.3
1,291,805	+				+0.2
1,291,806	-				-1.7
1,291,806	-				+0.6
1,291,806	-				-0.9
1,291,806	-				-1.2
1,291,806	-				-2.8
1,291,809	+				+1.8
1,291,810	-				-0.1
1,291,846	+				-0.1
1,291,846	+				-0.8
1,291,847	-				+0.6
1,291,860	+				-0.4
1,291,860	+				-0.2
1,291,860	+				-0.1
1,291,860	+				-0.4
1,291,860	+				+0.8
1,291,861	-				-0.6
1,291,861	-				+0.1
1,291,861	-				-0.3
1,291,870	+				-2.4
1,291,870	+				-0.0
1,291,870	+				+0.7
1,291,870	+				+1.1
1,291,870	+				+0.6
1,291,870	+				+0.2
1,291,871	-				+0.6
1,291,871	-				-0.0
1,291,871	-				+1.0
1,291,871	-				+0.7
1,291,871	-				-0.1
1,291,871	-				-0.3
1,291,949	+				+0.6
1,291,950	-				+1.9
1,291,953	+				-1.6
1,291,953	+				-1.2
1,292,001	+				-2.3
1,292,007	+				-1.0
1,292,007	+				-2.5
1,292,008	-				-2.9
1,292,042	+				+1.6
1,292,042	+				-0.8
1,292,051	+				-1.9
1,292,051	+				-0.4
1,292,051	+				-1.2
1,292,051	+				-1.9
1,292,051	+				-0.6
1,292,051	+				+0.6
1,292,051	+				+3.2
1,292,051	+				-1.7
1,292,051	+				+0.1
1,292,051	+				+1.2
1,292,051	+				-0.4
1,292,052	-				-0.2
1,292,052	-				+1.6
1,292,052	-				-1.6
1,292,091	-				+0.6
1,292,113	+				+4.6
1,292,114	-				+0.6
1,292,114	-				-0.1
1,292,172	+				+0.3
1,292,172	+				-1.5
1,292,211	-				-4.6
1,292,228	+				+0.3
1,292,228	+				-0.6
1,292,228	+				-0.5
1,292,228	+				+0.1
1,292,228	+				+0.3
1,292,236	+				+0.1
1,292,236	+				-0.1
1,292,237	-				+0.6
1,292,237	-				-3.4
1,292,237	-				-2.7
1,292,237	-				+0.0
1,292,239	+				-1.3
1,292,240	-				-1.1
1,292,250	+				-0.2
1,292,250	+				-0.2
1,292,253	+				+0.5
1,292,253	+				-1.3
1,292,253	+				-1.5
1,292,253	+				-1.0
1,292,253	+				-1.6
1,292,254	-				-1.7
1,292,269	+				+1.2
1,292,271	+				-0.4
1,292,271	+				+1.9
1,292,271	+				-0.2
1,292,271	+				-0.1
1,292,271	+				-0.5
1,292,271	+				+3.2
1,292,271	+				+3.8
1,292,272	-				+1.6
1,292,292	+				+1.6
1,292,364	+				-0.4
1,292,444	+		IAI47_06355	0.17	-1.4
1,292,444	+		IAI47_06355	0.17	-2.2
1,292,448	+		IAI47_06355	0.17	-1.9
1,292,448	+		IAI47_06355	0.17	-2.6
1,292,449	-		IAI47_06355	0.18	-1.2
1,292,449	-		IAI47_06355	0.18	-2.6
1,292,475	+		IAI47_06355	0.20	-2.5
1,292,475	+		IAI47_06355	0.20	+0.6
1,292,475	+		IAI47_06355	0.20	+0.6
1,292,475	+		IAI47_06355	0.20	-0.5
1,292,475	+		IAI47_06355	0.20	+0.6
1,292,475	+		IAI47_06355	0.20	+0.2
1,292,476	-		IAI47_06355	0.20	+2.6
1,292,476	-		IAI47_06355	0.20	-2.8
1,292,476	-		IAI47_06355	0.20	-1.3
1,292,476	-		IAI47_06355	0.20	-0.1
1,292,486	+		IAI47_06355	0.22	-1.6
1,292,510	+		IAI47_06355	0.24	+0.0
1,292,516	-		IAI47_06355	0.25	+0.0
1,292,538	+		IAI47_06355	0.27	-1.7
1,292,566	+		IAI47_06355	0.30	-2.2
1,292,566	+		IAI47_06355	0.30	-2.0
1,292,566	+		IAI47_06355	0.30	-3.2
1,292,566	+		IAI47_06355	0.30	-2.7
1,292,566	+		IAI47_06355	0.30	+0.6
1,292,566	+		IAI47_06355	0.30	-2.2
1,292,566	+		IAI47_06355	0.30	+0.6
1,292,566	+		IAI47_06355	0.30	+0.0
1,292,567	-		IAI47_06355	0.30	-0.4
1,292,567	-		IAI47_06355	0.30	-2.0
1,292,567	-		IAI47_06355	0.30	-1.0
1,292,585	+		IAI47_06355	0.32	-2.9
1,292,592	+		IAI47_06355	0.33	-3.6
1,292,592	+		IAI47_06355	0.33	-3.4
1,292,593	-		IAI47_06355	0.33	-1.7
1,292,622	+		IAI47_06355	0.36	+0.6
1,292,622	+		IAI47_06355	0.36	-3.9
1,292,622	+		IAI47_06355	0.36	-3.4
1,292,622	+		IAI47_06355	0.36	+1.2
1,292,623	-		IAI47_06355	0.36	+0.2
1,292,623	-		IAI47_06355	0.36	+2.2
1,292,694	+		IAI47_06355	0.44	+0.0
1,292,694	+		IAI47_06355	0.44	-2.1
1,292,694	+		IAI47_06355	0.44	-1.0
1,292,769	+		IAI47_06355	0.52	+0.6
1,292,769	+		IAI47_06355	0.52	-0.8
1,292,769	+		IAI47_06355	0.52	-1.4
1,292,769	+		IAI47_06355	0.52	+0.6
1,292,769	+		IAI47_06355	0.52	-2.1
1,292,770	-		IAI47_06355	0.52	+0.6
1,292,770	-		IAI47_06355	0.52	+0.9
1,292,770	-		IAI47_06355	0.52	+0.6
1,292,773	+		IAI47_06355	0.53	-1.0
1,292,780	+		IAI47_06355	0.53	-2.1
1,292,787	+		IAI47_06355	0.54	-1.7
1,292,787	+		IAI47_06355	0.54	-1.4
1,292,787	+		IAI47_06355	0.54	+0.6
1,292,821	+		IAI47_06355	0.58	-1.7
1,292,821	+		IAI47_06355	0.58	-1.4
1,292,821	+		IAI47_06355	0.58	+2.6
1,292,821	+		IAI47_06355	0.58	-0.4
1,292,821	+		IAI47_06355	0.58	-2.0
1,292,822	-		IAI47_06355	0.58	-3.1
1,292,823	+		IAI47_06355	0.58	-1.9
1,292,823	+		IAI47_06355	0.58	-2.9
1,292,824	-		IAI47_06355	0.58	-2.9
1,292,824	-		IAI47_06355	0.58	+0.2
1,292,886	+		IAI47_06355	0.65	-0.6
1,292,928	+		IAI47_06355	0.69	-1.7
1,292,928	+		IAI47_06355	0.69	-3.4
1,292,929	-		IAI47_06355	0.69	-0.4
1,292,935	+		IAI47_06355	0.70	+1.3
1,292,935	+		IAI47_06355	0.70	-3.6
1,292,935	+		IAI47_06355	0.70	-1.4
1,292,936	-		IAI47_06355	0.70	-2.7
1,292,946	+		IAI47_06355	0.71	-4.0
1,292,947	-		IAI47_06355	0.71	-3.6
1,292,960	+		IAI47_06355	0.73	-0.3
1,292,990	+		IAI47_06355	0.76	-1.4
1,293,034	-		IAI47_06355	0.81	+0.6
1,293,076	+		IAI47_06355	0.85	+1.6
1,293,076	+		IAI47_06355	0.85	-2.0
1,293,091	-		IAI47_06355	0.87	+2.6
1,293,105	+		IAI47_06355	0.89	-1.4
1,293,123	+				+0.6
1,293,129	+				+0.6
1,293,129	+				+0.2
1,293,129	+				-0.9
1,293,130	-				-1.0
1,293,130	-				-0.4
1,293,130	-				+1.4
1,293,130	-				+0.2
1,293,130	-				+0.3
1,293,144	+				-1.4
1,293,145	-				+0.3
1,293,147	+				-0.5
1,293,147	+				+0.6
1,293,148	-				+0.1
1,293,148	-				-1.5
1,293,148	-				+0.0
1,293,148	-				-1.7
1,293,148	-				+1.0
1,293,157	+				+0.9
1,293,157	+				+0.7
1,293,158	-				-0.2
1,293,208	+				+0.3
1,293,208	+				-1.0
1,293,209	-				+1.2
1,293,209	-				-0.6
1,293,209	-				-1.0
1,293,209	-				+0.5
1,293,209	-				-0.8
1,293,211	+				-0.5
1,293,211	+				+0.1
1,293,212	-				-1.4
1,293,212	-				+0.5
1,293,212	-				+0.3
1,293,212	-				-1.3
1,293,227	+				+0.2
1,293,227	+				-0.1
1,293,227	+				-0.3
1,293,227	+				+0.2
1,293,228	-				+1.0
1,293,228	-				-0.1
1,293,228	-				+0.8
1,293,228	-				+0.6
1,293,251	+				-0.5
1,293,262	+				-1.4
1,293,262	+				+0.5
1,293,262	+				+0.6
1,293,264	+				+0.9
1,293,264	+				-1.4
1,293,264	+				+1.1
1,293,264	+				+0.4
1,293,264	+				-0.5
1,293,265	-				+1.6
1,293,265	-				-0.5
1,293,265	-				+2.1
1,293,268	+				-0.4
1,293,268	+				+0.0
1,293,268	+				+0.4
1,293,268	+				+0.2
1,293,268	+				-1.1
1,293,268	+				+0.5
1,293,269	-				+0.2
1,293,269	-				+0.2
1,293,269	-				+1.1
1,293,269	-				-0.9
1,293,269	-				+2.0
1,293,269	-				+0.0
1,293,269	-				+0.0
1,293,269	-				+0.3
1,293,269	-				-0.5
1,293,306	+				+1.3
1,293,307	-				-0.2
1,293,307	-				-0.5
1,293,309	+				-1.0
1,293,310	-				-1.6
1,293,354	+				-1.3
1,293,354	+				-0.5
1,293,354	+				+0.9
1,293,355	-				+0.9
1,293,491	+				-0.4
1,293,492	-				-1.4
1,293,500	+				+2.1
1,293,523	+				-1.9
1,293,523	+				+0.4
1,293,523	+				+1.1
1,293,523	+				-1.4
1,293,524	-				-0.5
1,293,524	-				+0.9
1,293,524	-				+0.2
1,293,524	-				-1.3
1,293,524	-				-0.7
1,293,576	+				+0.3
1,293,582	-				+2.2
1,293,582	-				+1.3
1,293,582	-				-0.7
1,293,582	-				-1.9
1,293,582	-				-1.6
1,293,611	-				+1.8
1,293,640	-				+0.2
1,293,643	-				+1.4
1,293,661	-				-0.8
1,293,661	-				+2.2
1,293,699	+				+0.4
1,293,699	+				+0.1
1,293,699	+				+0.9
1,293,722	+				+0.7
1,293,734	+				+2.3
1,293,744	+				+1.6
1,293,744	+				-1.1
1,293,768	+				-0.5
1,293,843	+				-1.0
1,293,844	-				-0.3
1,293,854	+				-0.2
1,293,863	+				-3.0
1,293,863	+				-0.3
1,293,901	+		IAI47_06360	0.12	-0.3
1,293,901	+				-1.9
1,293,905	+		IAI47_06360	0.13	-0.1
1,293,906	-		IAI47_06360	0.13	-0.9
1,294,104	+		IAI47_06360	0.57	-1.1
1,294,194	+		IAI47_06360	0.78	+0.3