Strain Fitness in Pantoea sp. MT58 around IAI47_00250

Experiment: TNT (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00245 and IAI47_00250 are separated by 160 nucleotidesIAI47_00250 and IAI47_00255 are separated by 24 nucleotides IAI47_00245: IAI47_00245 - bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU, at 54,109 to 55,479 _00245 IAI47_00250: IAI47_00250 - F0F1 ATP synthase subunit epsilon, at 55,640 to 56,059 _00250 IAI47_00255: IAI47_00255 - F0F1 ATP synthase subunit beta, at 56,084 to 57,481 _00255 Position (kb) 55 56 57Strain fitness (log2 ratio) -1 0 1at 55.513 kb on - strandat 55.513 kb on - strandat 55.513 kb on - strandat 55.513 kb on - strandat 55.535 kb on - strandat 55.535 kb on - strandat 55.535 kb on - strandat 55.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TNT (N)
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55,513 - +0.4
55,513 - +0.4
55,513 - +0.5
55,513 - -0.4
55,535 - -0.4
55,535 - +0.8
55,535 - +1.7
55,535 - -1.1

Or see this region's nucleotide sequence