Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21675 and IAI47_21680 are separated by 713 nucleotides IAI47_21680 and IAI47_21685 overlap by 4 nucleotides
IAI47_21675: IAI47_21675 - helix-turn-helix domain-containing protein, at 77,343 to 77,933
_21675
IAI47_21680: IAI47_21680 - hypothetical protein, at 78,647 to 79,138
_21680
IAI47_21685: IAI47_21685 - winged helix-turn-helix domain-containing protein, at 79,135 to 80,079
_21685
Position (kb) 78
79
80 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 77.753 kb on + strand, within IAI47_21675 at 77.753 kb on + strand, within IAI47_21675 at 77.754 kb on - strand, within IAI47_21675 at 77.754 kb on - strand, within IAI47_21675 at 77.802 kb on - strand, within IAI47_21675 at 77.802 kb on - strand, within IAI47_21675 at 77.812 kb on - strand, within IAI47_21675 at 77.834 kb on - strand, within IAI47_21675 at 77.880 kb on - strand at 77.991 kb on + strand at 78.058 kb on - strand at 78.106 kb on - strand at 78.134 kb on + strand at 78.211 kb on - strand at 78.243 kb on - strand at 78.247 kb on - strand at 78.329 kb on + strand at 78.369 kb on + strand at 78.369 kb on + strand at 78.370 kb on - strand at 78.370 kb on - strand at 78.387 kb on - strand at 78.387 kb on - strand at 78.387 kb on - strand at 78.390 kb on + strand at 78.390 kb on + strand at 78.390 kb on + strand at 78.390 kb on + strand at 78.390 kb on + strand at 78.391 kb on - strand at 78.391 kb on - strand at 78.391 kb on - strand at 78.391 kb on - strand at 78.391 kb on - strand at 78.391 kb on - strand at 78.395 kb on + strand at 78.396 kb on - strand at 78.396 kb on - strand at 78.466 kb on + strand at 78.475 kb on + strand at 78.476 kb on - strand at 78.609 kb on + strand at 78.620 kb on + strand at 78.633 kb on - strand at 78.651 kb on + strand at 78.696 kb on + strand at 78.835 kb on - strand, within IAI47_21680 at 78.892 kb on + strand, within IAI47_21680 at 78.898 kb on + strand, within IAI47_21680 at 78.899 kb on - strand, within IAI47_21680 at 78.899 kb on - strand, within IAI47_21680 at 78.933 kb on + strand, within IAI47_21680 at 78.933 kb on + strand, within IAI47_21680 at 79.073 kb on - strand, within IAI47_21680 at 79.073 kb on - strand, within IAI47_21680 at 79.160 kb on + strand at 79.269 kb on + strand, within IAI47_21685 at 79.282 kb on + strand, within IAI47_21685 at 79.283 kb on - strand, within IAI47_21685 at 79.367 kb on - strand, within IAI47_21685 at 79.407 kb on + strand, within IAI47_21685 at 79.407 kb on + strand, within IAI47_21685 at 79.412 kb on + strand, within IAI47_21685 at 79.476 kb on + strand, within IAI47_21685 at 79.476 kb on + strand, within IAI47_21685 at 79.476 kb on + strand, within IAI47_21685 at 79.476 kb on + strand, within IAI47_21685 at 79.477 kb on - strand, within IAI47_21685 at 79.497 kb on + strand, within IAI47_21685 at 79.552 kb on + strand, within IAI47_21685 at 79.552 kb on + strand, within IAI47_21685 at 79.552 kb on + strand, within IAI47_21685 at 79.553 kb on - strand, within IAI47_21685 at 79.555 kb on + strand, within IAI47_21685 at 79.555 kb on + strand, within IAI47_21685 at 79.555 kb on + strand, within IAI47_21685 at 79.555 kb on + strand, within IAI47_21685 at 79.555 kb on + strand, within IAI47_21685 at 79.556 kb on - strand, within IAI47_21685 at 79.629 kb on + strand, within IAI47_21685 at 79.630 kb on - strand, within IAI47_21685 at 79.698 kb on + strand, within IAI47_21685 at 79.703 kb on - strand, within IAI47_21685 at 79.718 kb on + strand, within IAI47_21685 at 79.718 kb on + strand, within IAI47_21685 at 79.718 kb on + strand, within IAI47_21685 at 79.743 kb on + strand, within IAI47_21685 at 79.744 kb on - strand, within IAI47_21685 at 79.744 kb on - strand, within IAI47_21685 at 79.744 kb on - strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.747 kb on + strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.748 kb on - strand, within IAI47_21685 at 79.751 kb on + strand, within IAI47_21685 at 79.751 kb on + strand, within IAI47_21685 at 79.751 kb on + strand, within IAI47_21685 at 79.751 kb on + strand, within IAI47_21685 at 79.752 kb on - strand, within IAI47_21685 at 79.752 kb on - strand, within IAI47_21685 at 79.764 kb on + strand, within IAI47_21685 at 79.787 kb on + strand, within IAI47_21685 at 79.787 kb on + strand, within IAI47_21685 at 79.788 kb on - strand, within IAI47_21685 at 79.788 kb on - strand, within IAI47_21685 at 79.788 kb on - strand, within IAI47_21685 at 79.791 kb on + strand, within IAI47_21685 at 79.791 kb on + strand, within IAI47_21685 at 79.792 kb on - strand, within IAI47_21685 at 79.792 kb on - strand, within IAI47_21685 at 79.792 kb on - strand, within IAI47_21685 at 79.849 kb on + strand, within IAI47_21685 at 79.850 kb on - strand, within IAI47_21685 at 79.878 kb on + strand, within IAI47_21685 at 79.878 kb on + strand, within IAI47_21685 at 79.879 kb on - strand, within IAI47_21685 at 79.902 kb on + strand, within IAI47_21685 at 79.920 kb on + strand, within IAI47_21685 at 79.938 kb on - strand, within IAI47_21685 at 79.938 kb on - strand, within IAI47_21685 at 79.962 kb on - strand, within IAI47_21685 at 80.005 kb on - strand at 80.005 kb on - strand at 80.005 kb on - strand at 80.005 kb on - strand at 80.005 kb on - strand at 80.005 kb on - strand at 80.005 kb on - strand at 80.020 kb on + strand at 80.021 kb on - strand at 80.059 kb on - strand at 80.059 kb on - strand at 80.070 kb on + strand at 80.070 kb on + strand at 80.070 kb on + strand at 80.071 kb on - strand at 80.071 kb on - strand at 80.071 kb on - strand at 80.071 kb on - strand at 80.080 kb on + strand at 80.081 kb on - strand at 80.081 kb on - strand at 80.081 kb on - strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.134 kb on + strand at 80.134 kb on + strand at 80.134 kb on + strand at 80.134 kb on + strand at 80.135 kb on - strand at 80.135 kb on - strand at 80.135 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 77,753 + IAI47_21675 0.69 -1.5 77,753 + IAI47_21675 0.69 +1.9 77,754 - IAI47_21675 0.70 -0.3 77,754 - IAI47_21675 0.70 +3.7 77,802 - IAI47_21675 0.78 -1.2 77,802 - IAI47_21675 0.78 +1.3 77,812 - IAI47_21675 0.79 +1.3 77,834 - IAI47_21675 0.83 +0.4 77,880 - +0.3 77,991 + +2.4 78,058 - +1.2 78,106 - -1.5 78,134 + +1.3 78,211 - -0.9 78,243 - -0.9 78,247 - -1.1 78,329 + +0.5 78,369 + -0.2 78,369 + +2.1 78,370 - +1.1 78,370 - +0.2 78,387 - +1.1 78,387 - -0.6 78,387 - -2.0 78,390 + +2.8 78,390 + -4.0 78,390 + -3.7 78,390 + -0.5 78,390 + -0.7 78,391 - -3.9 78,391 - +0.7 78,391 - -2.7 78,391 - -0.6 78,391 - +0.2 78,391 - -1.5 78,395 + -1.7 78,396 - -1.7 78,396 - -0.9 78,466 + -1.5 78,475 + +0.2 78,476 - -1.8 78,609 + +1.1 78,620 + +1.0 78,633 - +0.3 78,651 + +1.0 78,696 + +0.8 78,835 - IAI47_21680 0.38 -2.1 78,892 + IAI47_21680 0.50 -0.2 78,898 + IAI47_21680 0.51 +1.5 78,899 - IAI47_21680 0.51 +0.7 78,899 - IAI47_21680 0.51 +1.1 78,933 + IAI47_21680 0.58 +1.6 78,933 + IAI47_21680 0.58 +0.3 79,073 - IAI47_21680 0.87 +3.9 79,073 - IAI47_21680 0.87 +1.3 79,160 + +0.8 79,269 + IAI47_21685 0.14 -2.8 79,282 + IAI47_21685 0.16 -0.5 79,283 - IAI47_21685 0.16 -4.0 79,367 - IAI47_21685 0.25 +0.3 79,407 + IAI47_21685 0.29 -1.0 79,407 + IAI47_21685 0.29 -3.1 79,412 + IAI47_21685 0.29 -0.3 79,476 + IAI47_21685 0.36 -0.8 79,476 + IAI47_21685 0.36 +0.5 79,476 + IAI47_21685 0.36 -0.7 79,476 + IAI47_21685 0.36 -1.5 79,477 - IAI47_21685 0.36 +0.3 79,497 + IAI47_21685 0.38 +3.5 79,552 + IAI47_21685 0.44 +1.3 79,552 + IAI47_21685 0.44 +2.0 79,552 + IAI47_21685 0.44 -0.0 79,553 - IAI47_21685 0.44 -2.1 79,555 + IAI47_21685 0.44 -2.7 79,555 + IAI47_21685 0.44 -1.0 79,555 + IAI47_21685 0.44 -2.1 79,555 + IAI47_21685 0.44 +0.3 79,555 + IAI47_21685 0.44 +1.8 79,556 - IAI47_21685 0.45 +1.4 79,629 + IAI47_21685 0.52 -0.9 79,630 - IAI47_21685 0.52 -0.0 79,698 + IAI47_21685 0.60 +0.3 79,703 - IAI47_21685 0.60 +0.6 79,718 + IAI47_21685 0.62 +1.0 79,718 + IAI47_21685 0.62 -3.2 79,718 + IAI47_21685 0.62 -0.1 79,743 + IAI47_21685 0.64 -0.6 79,744 - IAI47_21685 0.64 -1.4 79,744 - IAI47_21685 0.64 -1.6 79,744 - IAI47_21685 0.64 +0.7 79,747 + IAI47_21685 0.65 -1.5 79,747 + IAI47_21685 0.65 -1.2 79,747 + IAI47_21685 0.65 -2.1 79,747 + IAI47_21685 0.65 -1.2 79,747 + IAI47_21685 0.65 +0.7 79,747 + IAI47_21685 0.65 +1.0 79,747 + IAI47_21685 0.65 -2.0 79,747 + IAI47_21685 0.65 +3.7 79,747 + IAI47_21685 0.65 -3.0 79,747 + IAI47_21685 0.65 +0.2 79,747 + IAI47_21685 0.65 +0.4 79,747 + IAI47_21685 0.65 +1.1 79,747 + IAI47_21685 0.65 -1.5 79,747 + IAI47_21685 0.65 -0.8 79,747 + IAI47_21685 0.65 +0.3 79,747 + IAI47_21685 0.65 +0.3 79,748 - IAI47_21685 0.65 -2.9 79,748 - IAI47_21685 0.65 -0.3 79,748 - IAI47_21685 0.65 -3.1 79,748 - IAI47_21685 0.65 -3.1 79,748 - IAI47_21685 0.65 -1.5 79,748 - IAI47_21685 0.65 -2.0 79,748 - IAI47_21685 0.65 +1.9 79,748 - IAI47_21685 0.65 -1.8 79,748 - IAI47_21685 0.65 +2.6 79,748 - IAI47_21685 0.65 -3.2 79,748 - IAI47_21685 0.65 -2.8 79,748 - IAI47_21685 0.65 +3.8 79,748 - IAI47_21685 0.65 -0.1 79,748 - IAI47_21685 0.65 -0.2 79,748 - IAI47_21685 0.65 -0.4 79,748 - IAI47_21685 0.65 -1.0 79,748 - IAI47_21685 0.65 -0.4 79,748 - IAI47_21685 0.65 +1.0 79,748 - IAI47_21685 0.65 +0.9 79,748 - IAI47_21685 0.65 +1.7 79,751 + IAI47_21685 0.65 -0.5 79,751 + IAI47_21685 0.65 +0.6 79,751 + IAI47_21685 0.65 +0.2 79,751 + IAI47_21685 0.65 -0.7 79,752 - IAI47_21685 0.65 +0.3 79,752 - IAI47_21685 0.65 -1.2 79,764 + IAI47_21685 0.67 +0.3 79,787 + IAI47_21685 0.69 -3.0 79,787 + IAI47_21685 0.69 +1.3 79,788 - IAI47_21685 0.69 +3.5 79,788 - IAI47_21685 0.69 +0.3 79,788 - IAI47_21685 0.69 -3.1 79,791 + IAI47_21685 0.69 -1.8 79,791 + IAI47_21685 0.69 +2.8 79,792 - IAI47_21685 0.70 +2.3 79,792 - IAI47_21685 0.70 +0.8 79,792 - IAI47_21685 0.70 +0.0 79,849 + IAI47_21685 0.76 -0.2 79,850 - IAI47_21685 0.76 +0.3 79,878 + IAI47_21685 0.79 +0.4 79,878 + IAI47_21685 0.79 -3.4 79,879 - IAI47_21685 0.79 -1.0 79,902 + IAI47_21685 0.81 -3.2 79,920 + IAI47_21685 0.83 -2.7 79,938 - IAI47_21685 0.85 +0.7 79,938 - IAI47_21685 0.85 -1.7 79,962 - IAI47_21685 0.88 -0.7 80,005 - +1.3 80,005 - -0.1 80,005 - +1.5 80,005 - -2.5 80,005 - -2.2 80,005 - +0.4 80,005 - -1.8 80,020 + +1.0 80,021 - +0.9 80,059 - -0.7 80,059 - +3.2 80,070 + +1.3 80,070 + -0.7 80,070 + +1.2 80,071 - +0.2 80,071 - -1.5 80,071 - +1.7 80,071 - -0.4 80,080 + +0.3 80,081 - -2.1 80,081 - -2.1 80,081 - -3.7 80,083 + -1.5 80,083 + -2.7 80,083 + -1.0 80,083 + +1.3 80,083 + -0.7 80,083 + +0.0 80,084 - +0.3 80,084 - -1.2 80,084 - -1.8 80,084 - -1.4 80,084 - +2.0 80,084 - +3.3 80,134 + -2.5 80,134 + -1.9 80,134 + -1.7 80,134 + -3.3 80,135 - +0.5 80,135 - -2.7 80,135 - +3.7
Or see this region's nucleotide sequence