Strain Fitness in Pantoea sp. MT58 around IAI47_20930

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20925 and IAI47_20930 are separated by 41 nucleotidesIAI47_20930 and IAI47_20935 are separated by 325 nucleotides IAI47_20925: IAI47_20925 - sugar ABC transporter permease, at 432,023 to 433,330 _20925 IAI47_20930: IAI47_20930 - extracellular solute-binding protein, at 433,372 to 434,592 _20930 IAI47_20935: IAI47_20935 - ABC transporter ATP-binding protein, at 434,918 to 436,036 _20935 Position (kb) 433 434 435Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 432.491 kb on - strand, within IAI47_20925at 432.604 kb on + strand, within IAI47_20925at 432.629 kb on - strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.764 kb on - strand, within IAI47_20925at 432.766 kb on + strand, within IAI47_20925at 432.766 kb on + strand, within IAI47_20925at 432.826 kb on - strand, within IAI47_20925at 432.826 kb on - strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.838 kb on + strand, within IAI47_20925at 432.839 kb on - strand, within IAI47_20925at 432.839 kb on - strand, within IAI47_20925at 432.839 kb on - strand, within IAI47_20925at 432.899 kb on - strand, within IAI47_20925at 432.921 kb on + strand, within IAI47_20925at 432.944 kb on + strand, within IAI47_20925at 432.945 kb on - strand, within IAI47_20925at 432.945 kb on - strand, within IAI47_20925at 432.951 kb on + strand, within IAI47_20925at 432.951 kb on + strand, within IAI47_20925at 432.952 kb on - strand, within IAI47_20925at 432.971 kb on - strand, within IAI47_20925at 432.994 kb on + strand, within IAI47_20925at 432.994 kb on + strand, within IAI47_20925at 432.994 kb on + strand, within IAI47_20925at 432.995 kb on - strand, within IAI47_20925at 433.069 kb on + strand, within IAI47_20925at 433.069 kb on + strand, within IAI47_20925at 433.069 kb on + strand, within IAI47_20925at 433.070 kb on - strand, within IAI47_20925at 433.126 kb on + strand, within IAI47_20925at 433.126 kb on + strand, within IAI47_20925at 433.126 kb on + strand, within IAI47_20925at 433.126 kb on + strand, within IAI47_20925at 433.126 kb on + strand, within IAI47_20925at 433.129 kb on - strand, within IAI47_20925at 433.129 kb on - strand, within IAI47_20925at 433.174 kb on + strand, within IAI47_20925at 433.227 kb on + strandat 433.228 kb on - strandat 433.228 kb on - strandat 433.322 kb on + strandat 433.322 kb on + strandat 433.322 kb on + strandat 433.323 kb on - strandat 433.323 kb on - strandat 433.324 kb on + strandat 433.324 kb on + strandat 433.324 kb on + strandat 433.324 kb on + strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.325 kb on - strandat 433.349 kb on + strandat 433.355 kb on + strandat 433.355 kb on + strandat 433.373 kb on + strandat 433.373 kb on + strandat 433.516 kb on + strand, within IAI47_20930at 433.517 kb on - strand, within IAI47_20930at 433.652 kb on + strand, within IAI47_20930at 433.652 kb on + strand, within IAI47_20930at 433.653 kb on - strand, within IAI47_20930at 433.666 kb on - strand, within IAI47_20930at 433.668 kb on + strand, within IAI47_20930at 433.668 kb on + strand, within IAI47_20930at 433.669 kb on - strand, within IAI47_20930at 433.669 kb on - strand, within IAI47_20930at 433.669 kb on - strand, within IAI47_20930at 433.669 kb on - strand, within IAI47_20930at 433.704 kb on + strand, within IAI47_20930at 433.705 kb on - strand, within IAI47_20930at 433.725 kb on - strand, within IAI47_20930at 433.725 kb on - strand, within IAI47_20930at 433.732 kb on + strand, within IAI47_20930at 433.732 kb on + strand, within IAI47_20930at 433.732 kb on + strand, within IAI47_20930at 433.732 kb on + strand, within IAI47_20930at 433.732 kb on + strand, within IAI47_20930at 433.771 kb on + strand, within IAI47_20930at 433.772 kb on - strand, within IAI47_20930at 433.793 kb on + strand, within IAI47_20930at 433.793 kb on + strand, within IAI47_20930at 433.793 kb on + strand, within IAI47_20930at 433.794 kb on - strand, within IAI47_20930at 433.815 kb on - strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.949 kb on + strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.950 kb on - strand, within IAI47_20930at 433.990 kb on - strand, within IAI47_20930at 433.990 kb on - strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.033 kb on + strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.034 kb on - strand, within IAI47_20930at 434.066 kb on + strand, within IAI47_20930at 434.066 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.069 kb on + strand, within IAI47_20930at 434.099 kb on + strand, within IAI47_20930at 434.138 kb on + strand, within IAI47_20930at 434.183 kb on + strand, within IAI47_20930at 434.222 kb on + strand, within IAI47_20930at 434.222 kb on + strand, within IAI47_20930at 434.222 kb on + strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.223 kb on - strand, within IAI47_20930at 434.242 kb on - strand, within IAI47_20930at 434.267 kb on + strand, within IAI47_20930at 434.267 kb on + strand, within IAI47_20930at 434.268 kb on - strand, within IAI47_20930at 434.496 kb on + strandat 434.497 kb on - strandat 434.497 kb on - strandat 434.497 kb on - strandat 434.497 kb on - strandat 434.514 kb on + strandat 434.514 kb on + strandat 434.514 kb on + strandat 434.515 kb on - strandat 434.515 kb on - strandat 434.515 kb on - strandat 434.515 kb on - strandat 434.544 kb on + strandat 434.544 kb on + strandat 434.544 kb on + strandat 434.544 kb on + strandat 434.571 kb on + strandat 434.571 kb on + strandat 434.777 kb on - strandat 434.777 kb on - strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.797 kb on + strandat 434.823 kb on - strandat 434.823 kb on - strandat 434.873 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.915 kb on - strandat 434.926 kb on + strandat 434.927 kb on - strandat 434.992 kb on + strandat 434.992 kb on + strandat 435.040 kb on + strand, within IAI47_20935at 435.203 kb on - strand, within IAI47_20935at 435.223 kb on - strand, within IAI47_20935at 435.305 kb on - strand, within IAI47_20935at 435.310 kb on + strand, within IAI47_20935at 435.311 kb on - strand, within IAI47_20935at 435.367 kb on + strand, within IAI47_20935at 435.382 kb on + strand, within IAI47_20935at 435.382 kb on + strand, within IAI47_20935at 435.383 kb on - strand, within IAI47_20935at 435.383 kb on - strand, within IAI47_20935at 435.430 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.448 kb on + strand, within IAI47_20935at 435.449 kb on - strand, within IAI47_20935at 435.449 kb on - strand, within IAI47_20935at 435.449 kb on - strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.482 kb on + strand, within IAI47_20935at 435.483 kb on - strand, within IAI47_20935at 435.483 kb on - strand, within IAI47_20935at 435.483 kb on - strand, within IAI47_20935at 435.542 kb on + strand, within IAI47_20935at 435.543 kb on - strand, within IAI47_20935at 435.581 kb on + strand, within IAI47_20935at 435.582 kb on - strand, within IAI47_20935at 435.582 kb on - strand, within IAI47_20935at 435.584 kb on + strand, within IAI47_20935at 435.584 kb on + strand, within IAI47_20935at 435.585 kb on - strand, within IAI47_20935

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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432,491 - IAI47_20925 0.36 +0.6
432,604 + IAI47_20925 0.44 +2.6
432,629 - IAI47_20925 0.46 -1.0
432,763 + IAI47_20925 0.57 -0.2
432,763 + IAI47_20925 0.57 +1.8
432,763 + IAI47_20925 0.57 +1.3
432,763 + IAI47_20925 0.57 +1.1
432,764 - IAI47_20925 0.57 +1.0
432,766 + IAI47_20925 0.57 +1.3
432,766 + IAI47_20925 0.57 -2.8
432,826 - IAI47_20925 0.61 +2.1
432,826 - IAI47_20925 0.61 -2.4
432,834 + IAI47_20925 0.62 -1.7
432,834 + IAI47_20925 0.62 -0.6
432,834 + IAI47_20925 0.62 +3.9
432,834 + IAI47_20925 0.62 -0.8
432,834 + IAI47_20925 0.62 -1.5
432,835 - IAI47_20925 0.62 +2.5
432,835 - IAI47_20925 0.62 -0.2
432,835 - IAI47_20925 0.62 +0.6
432,835 - IAI47_20925 0.62 +1.3
432,835 - IAI47_20925 0.62 +1.3
432,835 - IAI47_20925 0.62 -0.2
432,838 + IAI47_20925 0.62 +2.4
432,839 - IAI47_20925 0.62 -2.9
432,839 - IAI47_20925 0.62 -0.7
432,839 - IAI47_20925 0.62 -2.9
432,899 - IAI47_20925 0.67 -1.0
432,921 + IAI47_20925 0.69 +1.0
432,944 + IAI47_20925 0.70 -0.1
432,945 - IAI47_20925 0.70 -1.5
432,945 - IAI47_20925 0.70 +0.8
432,951 + IAI47_20925 0.71 -1.0
432,951 + IAI47_20925 0.71 +0.1
432,952 - IAI47_20925 0.71 -3.5
432,971 - IAI47_20925 0.72 +1.2
432,994 + IAI47_20925 0.74 +0.6
432,994 + IAI47_20925 0.74 -2.9
432,994 + IAI47_20925 0.74 +1.2
432,995 - IAI47_20925 0.74 -2.7
433,069 + IAI47_20925 0.80 +0.2
433,069 + IAI47_20925 0.80 +1.3
433,069 + IAI47_20925 0.80 -0.5
433,070 - IAI47_20925 0.80 +1.4
433,126 + IAI47_20925 0.84 -1.7
433,126 + IAI47_20925 0.84 -3.2
433,126 + IAI47_20925 0.84 +2.3
433,126 + IAI47_20925 0.84 +1.3
433,126 + IAI47_20925 0.84 +1.0
433,129 - IAI47_20925 0.85 -3.2
433,129 - IAI47_20925 0.85 -0.5
433,174 + IAI47_20925 0.88 -1.2
433,227 + +2.7
433,228 - +1.3
433,228 - -2.0
433,322 + -0.8
433,322 + +1.8
433,322 + -3.0
433,323 - -0.1
433,323 - +0.1
433,324 + +1.0
433,324 + -1.0
433,324 + +0.8
433,324 + +4.7
433,325 - -2.2
433,325 - +0.3
433,325 - +1.3
433,325 - +4.8
433,325 - -3.0
433,325 - +1.8
433,325 - -0.2
433,325 - +1.8
433,325 - +0.0
433,349 + +1.8
433,355 + +1.3
433,355 + +1.7
433,373 + -2.0
433,373 + +3.6
433,516 + IAI47_20930 0.12 -0.2
433,517 - IAI47_20930 0.12 -2.9
433,652 + IAI47_20930 0.23 -0.7
433,652 + IAI47_20930 0.23 +1.9
433,653 - IAI47_20930 0.23 -0.8
433,666 - IAI47_20930 0.24 -2.2
433,668 + IAI47_20930 0.24 -0.5
433,668 + IAI47_20930 0.24 -1.2
433,669 - IAI47_20930 0.24 +0.3
433,669 - IAI47_20930 0.24 -2.7
433,669 - IAI47_20930 0.24 +0.6
433,669 - IAI47_20930 0.24 +2.9
433,704 + IAI47_20930 0.27 +0.4
433,705 - IAI47_20930 0.27 +1.0
433,725 - IAI47_20930 0.29 -0.1
433,725 - IAI47_20930 0.29 +1.3
433,732 + IAI47_20930 0.29 -0.9
433,732 + IAI47_20930 0.29 -1.0
433,732 + IAI47_20930 0.29 -2.8
433,732 + IAI47_20930 0.29 -1.5
433,732 + IAI47_20930 0.29 -0.7
433,771 + IAI47_20930 0.33 +0.5
433,772 - IAI47_20930 0.33 +0.5
433,793 + IAI47_20930 0.34 +1.0
433,793 + IAI47_20930 0.34 +1.5
433,793 + IAI47_20930 0.34 -0.5
433,794 - IAI47_20930 0.35 -1.2
433,815 - IAI47_20930 0.36 +2.6
433,949 + IAI47_20930 0.47 +1.9
433,949 + IAI47_20930 0.47 -1.2
433,949 + IAI47_20930 0.47 +0.8
433,949 + IAI47_20930 0.47 +0.3
433,949 + IAI47_20930 0.47 +0.5
433,950 - IAI47_20930 0.47 +0.8
433,950 - IAI47_20930 0.47 -0.8
433,950 - IAI47_20930 0.47 +3.2
433,950 - IAI47_20930 0.47 -2.9
433,990 - IAI47_20930 0.51 -1.8
433,990 - IAI47_20930 0.51 -0.8
434,033 + IAI47_20930 0.54 -2.0
434,033 + IAI47_20930 0.54 -0.4
434,033 + IAI47_20930 0.54 +2.0
434,033 + IAI47_20930 0.54 -0.7
434,033 + IAI47_20930 0.54 -1.0
434,033 + IAI47_20930 0.54 +0.2
434,033 + IAI47_20930 0.54 -0.4
434,033 + IAI47_20930 0.54 +0.6
434,034 - IAI47_20930 0.54 -0.5
434,034 - IAI47_20930 0.54 +0.0
434,034 - IAI47_20930 0.54 +1.1
434,034 - IAI47_20930 0.54 -1.5
434,034 - IAI47_20930 0.54 -2.4
434,034 - IAI47_20930 0.54 +0.6
434,034 - IAI47_20930 0.54 -1.5
434,034 - IAI47_20930 0.54 -0.2
434,066 + IAI47_20930 0.57 -0.5
434,066 + IAI47_20930 0.57 +0.3
434,069 + IAI47_20930 0.57 +3.7
434,069 + IAI47_20930 0.57 -0.3
434,069 + IAI47_20930 0.57 +0.3
434,069 + IAI47_20930 0.57 +0.3
434,099 + IAI47_20930 0.60 +1.3
434,138 + IAI47_20930 0.63 +0.3
434,183 + IAI47_20930 0.66 +0.6
434,222 + IAI47_20930 0.70 -1.8
434,222 + IAI47_20930 0.70 +0.3
434,222 + IAI47_20930 0.70 +3.2
434,223 - IAI47_20930 0.70 +1.0
434,223 - IAI47_20930 0.70 -2.2
434,223 - IAI47_20930 0.70 +0.8
434,223 - IAI47_20930 0.70 -2.6
434,223 - IAI47_20930 0.70 -0.8
434,223 - IAI47_20930 0.70 -2.5
434,223 - IAI47_20930 0.70 -0.2
434,223 - IAI47_20930 0.70 +3.4
434,223 - IAI47_20930 0.70 +0.0
434,242 - IAI47_20930 0.71 -2.5
434,267 + IAI47_20930 0.73 -1.0
434,267 + IAI47_20930 0.73 -2.1
434,268 - IAI47_20930 0.73 +1.5
434,496 + -3.4
434,497 - -0.0
434,497 - -2.2
434,497 - +0.5
434,497 - -1.2
434,514 + +1.3
434,514 + -1.0
434,514 + +1.6
434,515 - -0.2
434,515 - -2.5
434,515 - -1.0
434,515 - +1.3
434,544 + +3.9
434,544 + +0.5
434,544 + -0.7
434,544 + -1.8
434,571 + +1.0
434,571 + -0.2
434,777 - -1.2
434,777 - +4.0
434,797 + +2.4
434,797 + +2.3
434,797 + -0.1
434,797 + -0.2
434,797 + -2.9
434,797 + +0.4
434,797 + -1.9
434,823 - -0.7
434,823 - +1.3
434,873 - -2.4
434,915 - -3.1
434,915 - -1.0
434,915 - -2.4
434,915 - +3.8
434,915 - +2.2
434,915 - -0.2
434,926 + +0.5
434,927 - +1.1
434,992 + +0.2
434,992 + -3.8
435,040 + IAI47_20935 0.11 -2.9
435,203 - IAI47_20935 0.25 -2.6
435,223 - IAI47_20935 0.27 +0.9
435,305 - IAI47_20935 0.35 +1.3
435,310 + IAI47_20935 0.35 +1.4
435,311 - IAI47_20935 0.35 -2.6
435,367 + IAI47_20935 0.40 +1.0
435,382 + IAI47_20935 0.41 +1.3
435,382 + IAI47_20935 0.41 -1.8
435,383 - IAI47_20935 0.42 +0.9
435,383 - IAI47_20935 0.42 -0.5
435,430 + IAI47_20935 0.46 +1.1
435,448 + IAI47_20935 0.47 -2.7
435,448 + IAI47_20935 0.47 -2.6
435,448 + IAI47_20935 0.47 -1.1
435,448 + IAI47_20935 0.47 +0.8
435,448 + IAI47_20935 0.47 +0.4
435,449 - IAI47_20935 0.47 -0.2
435,449 - IAI47_20935 0.47 +0.2
435,449 - IAI47_20935 0.47 -0.4
435,482 + IAI47_20935 0.50 +1.3
435,482 + IAI47_20935 0.50 -2.0
435,482 + IAI47_20935 0.50 -2.2
435,482 + IAI47_20935 0.50 -1.5
435,482 + IAI47_20935 0.50 +0.1
435,482 + IAI47_20935 0.50 -2.4
435,483 - IAI47_20935 0.50 -0.2
435,483 - IAI47_20935 0.50 -1.0
435,483 - IAI47_20935 0.50 -1.2
435,542 + IAI47_20935 0.56 -2.1
435,543 - IAI47_20935 0.56 -1.2
435,581 + IAI47_20935 0.59 -1.1
435,582 - IAI47_20935 0.59 +0.6
435,582 - IAI47_20935 0.59 +1.3
435,584 + IAI47_20935 0.60 +0.7
435,584 + IAI47_20935 0.60 +1.3
435,585 - IAI47_20935 0.60 -4.3

Or see this region's nucleotide sequence