Strain Fitness in Pantoea sp. MT58 around IAI47_19440

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
115,992	+				+1.5
115,992	+				-0.7
115,992	+				+0.3
115,992	+				-0.4
115,992	+				+0.2
115,992	+				-1.4
115,993	-				-0.1
115,993	-				+1.5
115,993	-				+1.1
115,993	-				-0.9
115,994	+				-1.2
115,994	+				-2.7
115,994	+				+0.6
115,994	+				+0.3
115,995	-				-2.9
115,995	-				-3.0
115,995	-				+0.4
115,995	-				-1.1
116,047	+				-1.8
116,047	+				-0.3
116,047	+				-1.4
116,052	-				-2.5
116,052	-				-0.2
116,052	-				+0.7
116,096	+				-2.2
116,096	+				-1.4
116,098	+				-0.0
116,098	+				+1.9
116,099	-				-2.3
116,155	-		IAI47_19435	0.16	-1.4
116,281	+		IAI47_19435	0.30	+1.6
116,394	+		IAI47_19435	0.43	-0.1
116,394	+		IAI47_19435	0.43	-2.8
116,395	-		IAI47_19435	0.43	+0.1
116,395	-		IAI47_19435	0.43	+0.1
116,426	+		IAI47_19435	0.46	-2.7
116,465	-		IAI47_19435	0.51	+2.0
116,465	-		IAI47_19435	0.51	-1.6
116,465	-		IAI47_19435	0.51	-2.7
116,554	+		IAI47_19435	0.61	-0.1
116,590	+		IAI47_19435	0.65	+1.5
116,590	+		IAI47_19435	0.65	+1.6
116,590	+		IAI47_19435	0.65	+0.1
116,590	+		IAI47_19435	0.65	+2.4
116,591	-		IAI47_19435	0.65	-2.4
116,591	-		IAI47_19435	0.65	+1.1
116,596	+		IAI47_19435	0.66	-1.4
116,596	+		IAI47_19435	0.66	-2.3
116,596	+				-1.4
116,596	+		IAI47_19435	0.66	+1.7
116,596	+		IAI47_19435	0.66	+1.0
116,597	-		IAI47_19435	0.66	+2.2
116,706	+		IAI47_19435	0.78	-2.6
116,706	+		IAI47_19435	0.78	+1.7
116,707	-		IAI47_19435	0.78	-1.4
116,707	-		IAI47_19435	0.78	+1.4
116,707	-		IAI47_19435	0.78	-1.9
116,716	+		IAI47_19435	0.79	+2.1
116,717	-		IAI47_19435	0.80	+0.5
116,795	-		IAI47_19435	0.88	+0.4
116,878	+				+1.6
116,878	+				-2.4
116,878	+				-1.4
116,879	-				+1.2
116,879	-				+1.6
116,921	-				+1.7
116,940	+				-2.1
116,949	-				-0.1
117,024	+				+0.2
117,068	+		IAI47_19440	0.11	-4.0
117,068	+		IAI47_19440	0.11	+0.4
117,068	+		IAI47_19440	0.11	-2.4
117,141	+		IAI47_19440	0.18	-2.7
117,142	-		IAI47_19440	0.18	+2.0
117,168	+		IAI47_19440	0.21	-1.6
117,169	-		IAI47_19440	0.21	+0.4
117,173	+		IAI47_19440	0.21	-0.9
117,173	+		IAI47_19440	0.21	-0.1
117,285	+		IAI47_19440	0.32	+0.4
117,285	+		IAI47_19440	0.32	-2.2
117,285	+		IAI47_19440	0.32	+1.3
117,286	-		IAI47_19440	0.32	-1.2
117,286	-		IAI47_19440	0.32	-1.4
117,288	+		IAI47_19440	0.32	-0.4
117,375	+		IAI47_19440	0.40	-2.8
117,375	+		IAI47_19440	0.40	-2.7
117,375	+		IAI47_19440	0.40	+1.7
117,376	-		IAI47_19440	0.40	+0.2
117,410	-		IAI47_19440	0.43	+0.9
117,410	-		IAI47_19440	0.43	-0.0
117,410	-		IAI47_19440	0.43	-1.9
117,410	-		IAI47_19440	0.43	+0.9
117,410	-		IAI47_19440	0.43	+2.5
117,443	+		IAI47_19440	0.47	+1.1
117,443	+		IAI47_19440	0.47	-2.3
117,443	+		IAI47_19440	0.47	+0.3
117,443	+		IAI47_19440	0.47	+2.0
117,443	+		IAI47_19440	0.47	-2.7
117,443	+		IAI47_19440	0.47	-3.3
117,443	+		IAI47_19440	0.47	+1.4
117,443	+		IAI47_19440	0.47	-0.4
117,443	+		IAI47_19440	0.47	-0.3
117,444	-		IAI47_19440	0.47	+0.5
117,444	-		IAI47_19440	0.47	+1.8
117,444	-		IAI47_19440	0.47	+1.4
117,444	-		IAI47_19440	0.47	-0.3
117,534	+		IAI47_19440	0.55	+2.0
117,624	+		IAI47_19440	0.64	+2.8
117,647	+		IAI47_19440	0.66	+0.5
117,647	+		IAI47_19440	0.66	+2.0
117,648	-		IAI47_19440	0.66	+3.0
117,648	-		IAI47_19440	0.66	-1.8
117,648	-		IAI47_19440	0.66	+1.1
117,656	+		IAI47_19440	0.67	+1.4
117,656	+		IAI47_19440	0.67	-1.9
117,657	-		IAI47_19440	0.67	-0.3
117,973	+				-1.2
117,974	-				-2.6
117,974	-				+0.4
118,023	+				-0.9
118,023	+				-0.9
118,024	-				+0.1
118,063	+				-1.6
118,063	+				+0.4
118,064	-				+0.5
118,064	-				+1.4
118,082	-				+2.0
118,089	-				+1.4
118,104	-				+0.9
118,147	-				+2.7
118,246	-		IAI47_19445	0.16	-0.9
118,246	-		IAI47_19445	0.16	-3.5
118,254	+		IAI47_19445	0.16	+0.2
118,254	+		IAI47_19445	0.16	-2.2
118,255	-		IAI47_19445	0.17	+0.8
118,255	-		IAI47_19445	0.17	-2.4
118,301	+		IAI47_19445	0.22	-2.4
118,301	+		IAI47_19445	0.22	-1.8
118,301	+		IAI47_19445	0.22	-2.2
118,301	+		IAI47_19445	0.22	-3.0
118,301	+		IAI47_19445	0.22	-1.7
118,302	-		IAI47_19445	0.22	+3.0
118,302	-		IAI47_19445	0.22	-0.6
118,302	-		IAI47_19445	0.22	-2.3
118,302	-		IAI47_19445	0.22	-2.1
118,356	+		IAI47_19445	0.28	-1.9
118,356	+		IAI47_19445	0.28	+0.8
118,393	+		IAI47_19445	0.32	-0.9
118,393	+		IAI47_19445	0.32	-3.5
118,394	-		IAI47_19445	0.32	-2.4
118,477	+		IAI47_19445	0.41	-2.3
118,596	+		IAI47_19445	0.54	-2.2
118,596	+		IAI47_19445	0.54	+0.5
118,656	+		IAI47_19445	0.61	-0.5
118,656	+		IAI47_19445	0.61	+0.2
118,656	+		IAI47_19445	0.61	-0.7
118,657	-		IAI47_19445	0.61	-4.2
118,674	+		IAI47_19445	0.63	+0.8
118,674	+		IAI47_19445	0.63	+1.7
118,674	+		IAI47_19445	0.63	-1.8
118,674	+		IAI47_19445	0.63	+3.1
118,674	+		IAI47_19445	0.63	-3.0
118,674	+		IAI47_19445	0.63	+2.7
118,675	-		IAI47_19445	0.63	-2.1
118,675	-		IAI47_19445	0.63	+1.4
118,675	-		IAI47_19445	0.63	-3.4
118,681	+		IAI47_19445	0.64	+0.4
118,688	-		IAI47_19445	0.64	+2.5
118,765	+		IAI47_19445	0.73	-0.2
118,765	+		IAI47_19445	0.73	+1.4
118,765	+		IAI47_19445	0.73	-3.3
118,766	-		IAI47_19445	0.73	-1.4
118,766	-		IAI47_19445	0.73	-1.8
118,821	+		IAI47_19445	0.79	-1.7
118,822	-		IAI47_19445	0.79	+1.4
118,876	-		IAI47_19445	0.85	-0.1
118,902	-		IAI47_19445	0.88	+1.6
118,907	+		IAI47_19445	0.89	-0.6
118,907	+		IAI47_19445	0.89	+1.4
118,908	-		IAI47_19445	0.89	-2.1
118,908	-		IAI47_19445	0.89	-1.7
118,934	-				-1.6
118,934	-				+1.2
118,942	+				+0.7
118,943	-				+1.0
118,943	-				+0.5
118,951	+				+0.3
118,951	+				+0.9
118,951	+				-0.1
118,952	-				-1.4
118,952	-				-0.6
118,981	-				-1.9
118,981	-				-2.9
119,006	+				-3.0
119,006	+				+2.0
119,007	-				+1.4