Strain Fitness in Pantoea sp. MT58 around IAI47_12545

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,641,748	+				+1.4
2,641,749	-				+5.4
2,641,858	+		IAI47_12540	0.14	-0.7
2,641,858	+		IAI47_12540	0.14	+1.6
2,641,858	+		IAI47_12540	0.14	+1.0
2,641,858	+		IAI47_12540	0.14	-0.4
2,641,859	-		IAI47_12540	0.14	-1.1
2,641,859	-		IAI47_12540	0.14	-2.1
2,641,859	-		IAI47_12540	0.14	-0.0
2,641,859	-		IAI47_12540	0.14	+0.8
2,641,865	+		IAI47_12540	0.15	+1.1
2,641,865	+		IAI47_12540	0.15	+4.4
2,641,865	+		IAI47_12540	0.15	-2.9
2,641,865	+		IAI47_12540	0.15	-1.6
2,641,865	+		IAI47_12540	0.15	-2.7
2,641,866	-		IAI47_12540	0.15	-0.6
2,641,866	-		IAI47_12540	0.15	+0.2
2,641,866	-		IAI47_12540	0.15	+0.5
2,641,866	-		IAI47_12540	0.15	+0.5
2,641,868	+		IAI47_12540	0.15	-3.2
2,641,868	+		IAI47_12540	0.15	+0.4
2,641,869	-		IAI47_12540	0.15	-2.5
2,641,896	+		IAI47_12540	0.18	-0.5
2,641,896	+		IAI47_12540	0.18	+0.5
2,641,897	-		IAI47_12540	0.18	-3.0
2,641,901	+		IAI47_12540	0.19	-1.7
2,641,901	+		IAI47_12540	0.19	-1.4
2,641,902	-		IAI47_12540	0.19	-0.3
2,642,009	+		IAI47_12540	0.30	+0.4
2,642,009	+		IAI47_12540	0.30	-2.6
2,642,010	-		IAI47_12540	0.31	+2.3
2,642,115	+		IAI47_12540	0.42	-2.7
2,642,171	+		IAI47_12540	0.48	-2.4
2,642,172	-		IAI47_12540	0.48	-0.5
2,642,192	-		IAI47_12540	0.50	+1.2
2,642,194	+		IAI47_12540	0.51	-1.0
2,642,195	-		IAI47_12540	0.51	+1.0
2,642,195	-		IAI47_12540	0.51	-1.5
2,642,195	-		IAI47_12540	0.51	+3.0
2,642,195	-		IAI47_12540	0.51	+1.2
2,642,195	-		IAI47_12540	0.51	-0.9
2,642,216	+		IAI47_12540	0.53	-2.2
2,642,225	+		IAI47_12540	0.54	+0.0
2,642,225	+		IAI47_12540	0.54	-0.0
2,642,226	-		IAI47_12540	0.54	+1.2
2,642,226	-		IAI47_12540	0.54	-3.5
2,642,282	+		IAI47_12540	0.60	-1.2
2,642,282	+		IAI47_12540	0.60	+0.0
2,642,297	+		IAI47_12540	0.62	-0.7
2,642,297	+		IAI47_12540	0.62	+0.1
2,642,297	+		IAI47_12540	0.62	+0.9
2,642,298	-		IAI47_12540	0.62	-3.5
2,642,298	-		IAI47_12540	0.62	+1.0
2,642,298	-		IAI47_12540	0.62	-3.4
2,642,319	+		IAI47_12540	0.64	+1.4
2,642,319	+		IAI47_12540	0.64	-1.7
2,642,320	-		IAI47_12540	0.64	-0.5
2,642,320	-		IAI47_12540	0.64	-1.2
2,642,408	+		IAI47_12540	0.74	-0.6
2,642,409	-		IAI47_12540	0.74	+0.2
2,642,409	-		IAI47_12540	0.74	-2.1
2,642,480	+		IAI47_12540	0.82	-2.6
2,642,581	+				-2.5
2,642,582	-				+2.6
2,642,582	-				-3.8
2,642,588	+				-1.2
2,642,588	+				-1.4
2,642,589	-				+1.2
2,642,591	+				-1.0
2,642,592	-				-3.1
2,642,592	-				-1.1
2,642,592	-				-2.4
2,642,622	-				+1.5
2,642,622	-				+1.0
2,642,644	+				-1.0
2,642,644	+				+1.6
2,642,644	+				-1.2
2,642,645	-				+0.0
2,642,645	-				-2.3
2,642,672	+				+1.1
2,642,672	+				+1.0
2,642,673	-				+1.4
2,642,673	-				+1.8
2,642,673	-				+0.5
2,642,743	+				+0.0
2,642,743	+				+0.6
2,642,744	-				-2.3
2,642,846	+		IAI47_12545	0.60	+1.9
2,642,846	+		IAI47_12545	0.60	+0.2
2,642,847	-		IAI47_12545	0.60	+1.1
2,642,847	-		IAI47_12545	0.60	+0.7
2,642,933	+				-0.9
2,642,945	+				+0.2
2,642,946	-				-0.6
2,642,946	-				-0.8
2,642,946	-				+0.3
2,642,946	-				+3.3
2,642,991	+				-2.4
2,642,992	-				-2.1
2,642,992	-				-0.3
2,642,992	-				+1.6
2,642,996	-				-1.6
2,643,013	+				+0.3
2,643,013	+				+0.2
2,643,014	-				+2.8
2,643,014	-				-0.1
2,643,047	+				-0.1
2,643,047	+				-3.0
2,643,047	+				+0.9
2,643,048	-				+1.0
2,643,048	-				-1.2
2,643,048	-				-2.0
2,643,048	-				+2.9
2,643,048	-				+0.6
2,643,048	-				-3.0
2,643,048	-				+1.3
2,643,057	+				-2.0
2,643,057	+				-2.9
2,643,058	-				+0.2
2,643,058	-				-1.5
2,643,058	-				+1.6
2,643,080	+				+0.6
2,643,080	+				+2.0
2,643,080	+				+0.2
2,643,091	-				-3.8
2,643,091	-				+1.2
2,643,101	-				-2.9
2,643,101	-				-2.9
2,643,112	+				+0.2
2,643,112	+				-3.1
2,643,112	+				-2.3
2,643,153	+				+0.8
2,643,154	-				+0.6
2,643,170	+				+2.2
2,643,171	-				-1.2
2,643,173	-				-1.2
2,643,208	+				+0.6
2,643,209	-				+0.3
2,643,209	-				-1.7
2,643,209	-				-0.4
2,643,209	-				+2.7
2,643,230	+				+0.4
2,643,230	+				-0.4
2,643,230	+				+1.7
2,643,230	+				+2.5
2,643,230	+				-0.5
2,643,230	+				-2.4
2,643,231	-				-0.1
2,643,231	-				+2.7
2,643,231	-				-0.4
2,643,231	-				-1.4
2,643,231	-				-0.7
2,643,231	-				+1.3
2,643,234	-				-1.1
2,643,234	-				-3.5
2,643,242	+				+1.8
2,643,243	-				-2.5
2,643,243	-				+0.6
2,643,243	-				-0.6
2,643,243	-				-2.6
2,643,243	-				-0.1
2,643,250	+				+1.9
2,643,250	+				+0.9
2,643,250	+				+0.3
2,643,251	-				-2.4
2,643,251	-				+2.3
2,643,251	-				-3.9
2,643,251	-				+1.6
2,643,251	-				-1.7
2,643,312	-		IAI47_12550	0.17	+0.6
2,643,313	+		IAI47_12550	0.17	-0.0
2,643,416	+		IAI47_12550	0.34	-0.8
2,643,416	+		IAI47_12550	0.34	+0.6
2,643,416	+		IAI47_12550	0.34	-3.2
2,643,416	+		IAI47_12550	0.34	+2.0
2,643,417	-		IAI47_12550	0.35	-2.8
2,643,417	-		IAI47_12550	0.35	-1.0
2,643,428	-		IAI47_12550	0.36	-1.7
2,643,428	-		IAI47_12550	0.36	+1.6
2,643,428	-		IAI47_12550	0.36	-2.1
2,643,544	+		IAI47_12550	0.56	+4.6
2,643,544	+		IAI47_12550	0.56	+1.4
2,643,545	-		IAI47_12550	0.56	+0.1
2,643,545	-		IAI47_12550	0.56	-3.1
2,643,545	-		IAI47_12550	0.56	+2.5
2,643,557	-		IAI47_12550	0.58	+2.9
2,643,580	+		IAI47_12550	0.62	+0.6
2,643,580	+		IAI47_12550	0.62	-1.7
2,643,580	+		IAI47_12550	0.62	+0.0
2,643,580	+		IAI47_12550	0.62	-1.0
2,643,580	+		IAI47_12550	0.62	+4.6
2,643,580	+		IAI47_12550	0.62	+0.1
2,643,581	-		IAI47_12550	0.62	+1.5
2,643,581	-		IAI47_12550	0.62	+2.5
2,643,581	-		IAI47_12550	0.62	-1.2
2,643,581	-		IAI47_12550	0.62	+0.1
2,643,581	-		IAI47_12550	0.62	-0.3
2,643,581	-		IAI47_12550	0.62	-0.3
2,643,581	-		IAI47_12550	0.62	-2.9
2,643,581	-		IAI47_12550	0.62	-3.1
2,643,583	+		IAI47_12550	0.62	-2.1
2,643,583	+		IAI47_12550	0.62	+0.7
2,643,583	+		IAI47_12550	0.62	+0.7
2,643,583	+		IAI47_12550	0.62	+0.3
2,643,583	+		IAI47_12550	0.62	+0.0
2,643,583	+		IAI47_12550	0.62	+0.3
2,643,583	+		IAI47_12550	0.62	+1.1
2,643,583	+		IAI47_12550	0.62	-0.8
2,643,583	+		IAI47_12550	0.62	-0.4
2,643,583	+		IAI47_12550	0.62	-3.5
2,643,583	+		IAI47_12550	0.62	-3.2
2,643,584	-		IAI47_12550	0.62	-2.3
2,643,584	-		IAI47_12550	0.62	-2.5
2,643,584	-		IAI47_12550	0.62	+0.0
2,643,584	-		IAI47_12550	0.62	+1.1
2,643,584	-		IAI47_12550	0.62	+0.9
2,643,631	+		IAI47_12550	0.70	-0.2
2,643,631	+		IAI47_12550	0.70	+2.0
2,643,662	-		IAI47_12550	0.76	-2.0
2,643,662	-		IAI47_12550	0.76	+0.1
2,643,689	+		IAI47_12550	0.80	-1.6
2,643,690	-		IAI47_12550	0.80	-2.3
2,643,690	-		IAI47_12550	0.80	+2.3
2,643,733	+		IAI47_12550	0.87	+1.9
2,643,733	+		IAI47_12550	0.87	+0.3
2,643,733	+		IAI47_12550	0.87	-1.9
2,643,734	-		IAI47_12550	0.88	+1.8
2,643,734	-		IAI47_12550	0.88	-2.4
2,643,734	-		IAI47_12550	0.88	+0.9
2,643,751	+				+0.0
2,643,751	+				+1.4
2,643,752	-				-2.3
2,643,811	+				+2.1
2,643,812	-				-1.0
2,643,812	-				-2.5
2,643,812	-				+0.1
2,643,827	+				+0.3
2,643,828	-				-0.1
2,643,828	-				-0.6
2,643,833	+				-0.1
2,643,833	+				+2.6
2,643,834	-				+1.9
2,643,834	-				-3.5
2,643,834	-				+1.4
2,643,834	-				-2.7
2,643,884	+		IAI47_12555	0.24	+0.9
2,643,884	+		IAI47_12555	0.24	-1.6
2,643,884	+		IAI47_12555	0.24	+1.8
2,643,884	+		IAI47_12555	0.24	-2.7
2,643,884	+		IAI47_12555	0.24	-1.7
2,643,884	+		IAI47_12555	0.24	+0.6
2,643,884	+		IAI47_12555	0.24	+1.0
2,643,885	-		IAI47_12555	0.25	-3.6
2,643,885	-		IAI47_12555	0.25	-1.9
2,643,885	-		IAI47_12555	0.25	+0.9
2,643,885	-		IAI47_12555	0.25	-0.4
2,643,885	-		IAI47_12555	0.25	-2.7