Strain Fitness in Pantoea sp. MT58 around IAI47_10480

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,220,136	+		IAI47_10470	0.86	+0.6
2,220,140	+		IAI47_10470	0.86	-0.6
2,220,140	+		IAI47_10470	0.86	+0.6
2,220,243	+				-1.8
2,220,243	+				-0.2
2,220,244	-				-0.6
2,220,408	+		IAI47_10475	0.28	+1.2
2,220,408	+		IAI47_10475	0.28	+4.8
2,220,408	+		IAI47_10475	0.28	-2.5
2,220,409	-		IAI47_10475	0.28	+0.4
2,220,454	+		IAI47_10475	0.35	-0.7
2,220,454	+		IAI47_10475	0.35	-0.2
2,220,454	+		IAI47_10475	0.35	-2.2
2,220,454	+				+0.4
2,220,454	+		IAI47_10475	0.35	-0.9
2,220,454	+		IAI47_10475	0.35	-2.4
2,220,454	+		IAI47_10475	0.35	-2.8
2,220,455	-		IAI47_10475	0.35	-0.7
2,220,455	-		IAI47_10475	0.35	+0.3
2,220,455	-		IAI47_10475	0.35	-0.1
2,220,455	-		IAI47_10475	0.35	-0.3
2,220,501	+		IAI47_10475	0.42	-0.6
2,220,501	+		IAI47_10475	0.42	+1.1
2,220,501	+		IAI47_10475	0.42	-0.2
2,220,502	-		IAI47_10475	0.43	+0.1
2,220,502	-		IAI47_10475	0.43	+0.7
2,220,502	-		IAI47_10475	0.43	-2.1
2,220,502	-		IAI47_10475	0.43	+0.6
2,220,502	-		IAI47_10475	0.43	+1.6
2,220,502	-		IAI47_10475	0.43	-2.3
2,220,589	-		IAI47_10475	0.56	-0.0
2,220,613	-		IAI47_10475	0.60	+1.6
2,220,613	-		IAI47_10475	0.60	-1.2
2,220,645	+		IAI47_10475	0.65	+0.3
2,220,646	-		IAI47_10475	0.65	-1.8
2,220,646	-		IAI47_10475	0.65	-1.2
2,220,646	-		IAI47_10475	0.65	+0.1
2,220,646	-		IAI47_10475	0.65	+0.1
2,220,742	+		IAI47_10475	0.81	-4.2
2,220,742	+		IAI47_10475	0.81	+1.5
2,220,742	+		IAI47_10475	0.81	+0.5
2,220,743	-		IAI47_10475	0.81	+0.3
2,220,744	+		IAI47_10475	0.81	+0.9
2,220,744	+		IAI47_10475	0.81	-0.9
2,220,744	+		IAI47_10475	0.81	+2.9
2,220,845	-				-1.9
2,220,875	+				-2.7
2,220,919	+				+0.9
2,220,974	+				-0.9
2,220,974	+				-0.8
2,220,975	-				+0.5
2,220,975	-				-1.2
2,220,975	-				+2.2
2,220,998	+				+0.9
2,220,998	+				-1.9
2,220,998	+				-1.4
2,220,998	+				-1.5
2,220,998	+				+2.5
2,220,999	-				-0.4
2,220,999	-				-1.3
2,221,016	-				+3.9
2,221,039	-				-0.5
2,221,049	+				-2.4
2,221,050	-				+1.1
2,221,063	+				+1.3
2,221,068	+				+0.9
2,221,069	-				+0.3
2,221,147	-		IAI47_10480	0.11	-1.4
2,221,147	-		IAI47_10480	0.11	+1.6
2,221,150	+		IAI47_10480	0.11	+1.6
2,221,150	+		IAI47_10480	0.11	-0.1
2,221,198	-		IAI47_10480	0.18	+0.3
2,221,279	-		IAI47_10480	0.29	+1.6
2,221,483	+		IAI47_10480	0.57	+1.4
2,221,484	-		IAI47_10480	0.57	+0.1
2,221,546	+		IAI47_10480	0.66	+0.6
2,221,546	+		IAI47_10480	0.66	+1.3
2,221,546	+		IAI47_10480	0.66	-1.4
2,221,547	-		IAI47_10480	0.66	+1.4
2,221,547	-		IAI47_10480	0.66	+1.2
2,221,547	-		IAI47_10480	0.66	+1.3
2,221,547	-		IAI47_10480	0.66	-1.7
2,221,547	-		IAI47_10480	0.66	-3.1
2,221,547	-		IAI47_10480	0.66	+2.0
2,221,547	-		IAI47_10480	0.66	+2.9
2,221,547	-		IAI47_10480	0.66	-1.5
2,221,547	-		IAI47_10480	0.66	-2.7
2,221,547	-		IAI47_10480	0.66	+1.4
2,221,582	+		IAI47_10480	0.71	+1.0
2,221,583	-		IAI47_10480	0.71	+0.6
2,221,585	+		IAI47_10480	0.72	-2.4
2,221,585	+		IAI47_10480	0.72	-0.2
2,221,586	-		IAI47_10480	0.72	-3.1
2,221,692	+		IAI47_10480	0.86	+4.0
2,221,692	+		IAI47_10480	0.86	+3.4
2,221,693	-		IAI47_10480	0.87	-2.3
2,221,693	-		IAI47_10480	0.87	-0.7
2,221,693	-		IAI47_10480	0.87	-2.3
2,221,693	-		IAI47_10480	0.87	+2.1
2,221,693	-		IAI47_10480	0.87	-0.1
2,221,714	+		IAI47_10480	0.89	+1.1
2,221,715	-		IAI47_10480	0.90	-0.7
2,221,747	-				-2.7
2,221,747	-				-1.2
2,221,747	-				-0.7
2,221,900	+				+1.1
2,221,901	-				-1.0
2,221,901	-				-1.8
2,221,905	+				-0.2
2,221,905	+				-0.9
2,221,905	+				-0.3
2,221,905	+				-3.2
2,221,906	-				-0.4
2,221,906	-				-0.9
2,221,906	-				-0.9
2,221,911	+				-0.4
2,221,912	-				+0.2
2,221,912	-				-3.1
2,221,961	+				-2.6
2,221,961	+				-0.7
2,222,011	-				+0.7
2,222,092	+				-1.9
2,222,092	+				+0.7
2,222,092	+				+4.4
2,222,093	-				+0.2
2,222,093	-				-2.4
2,222,093	-				+1.9
2,222,093	-				-2.8
2,222,093	-				+1.6
2,222,126	-				-2.1
2,222,147	-				-0.2
2,222,155	+				-1.5
2,222,155	+				-2.9
2,222,156	-				-0.8
2,222,156	-				-0.6
2,222,258	-		IAI47_10485	0.17	+1.4
2,222,305	+		IAI47_10485	0.21	+0.8
2,222,305	+		IAI47_10485	0.21	-2.1
2,222,306	-		IAI47_10485	0.21	-0.2
2,222,306	-		IAI47_10485	0.21	-0.5
2,222,311	+		IAI47_10485	0.21	-1.4
2,222,311	+		IAI47_10485	0.21	+1.6
2,222,311	+		IAI47_10485	0.21	+0.6
2,222,311	+		IAI47_10485	0.21	-3.4
2,222,311	+		IAI47_10485	0.21	+6.0
2,222,312	-		IAI47_10485	0.21	-0.3
2,222,418	+		IAI47_10485	0.29	-0.0
2,222,419	-		IAI47_10485	0.29	-1.3
2,222,426	+		IAI47_10485	0.30	+0.1
2,222,427	-		IAI47_10485	0.30	-0.4
2,222,427	-		IAI47_10485	0.30	+1.1
2,222,427	-		IAI47_10485	0.30	-2.2
2,222,692	-		IAI47_10485	0.50	+1.3
2,222,692	-		IAI47_10485	0.50	-2.1
2,222,704	+		IAI47_10485	0.51	-0.4
2,222,704	+		IAI47_10485	0.51	-2.1
2,222,704	+		IAI47_10485	0.51	-2.7
2,222,705	-		IAI47_10485	0.51	-0.4
2,222,760	+		IAI47_10485	0.55	-1.0
2,222,760	+		IAI47_10485	0.55	-0.1
2,222,761	-		IAI47_10485	0.55	-0.6
2,222,761	-		IAI47_10485	0.55	+2.2
2,222,761	-		IAI47_10485	0.55	+1.4
2,222,764	+		IAI47_10485	0.55	-1.7
2,222,764	+		IAI47_10485	0.55	-2.9
2,222,764	+		IAI47_10485	0.55	-1.1
2,222,765	-		IAI47_10485	0.55	-1.1
2,222,765	-		IAI47_10485	0.55	-0.6