Strain Fitness in Pantoea sp. MT58 around IAI47_09945

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
2,105,750	-		IAI47_09940	0.53	-1.9
2,105,750	-		IAI47_09940	0.53	-0.2
2,105,760	+		IAI47_09940	0.54	-0.4
2,105,760	+		IAI47_09940	0.54	-0.1
2,105,760	+		IAI47_09940	0.54	-1.4
2,105,761	-		IAI47_09940	0.54	+1.0
2,105,761	-		IAI47_09940	0.54	-1.0
2,105,808	+		IAI47_09940	0.59	-1.2
2,105,808	+		IAI47_09940	0.59	-2.8
2,105,808	+		IAI47_09940	0.59	-0.3
2,105,808	+		IAI47_09940	0.59	+1.6
2,105,808	+		IAI47_09940	0.59	+2.3
2,105,809	-		IAI47_09940	0.59	-0.8
2,105,809	-		IAI47_09940	0.59	-3.5
2,105,809	-		IAI47_09940	0.59	-1.1
2,105,809	-		IAI47_09940	0.59	-3.3
2,105,809	-		IAI47_09940	0.59	-1.8
2,105,812	+		IAI47_09940	0.59	-0.3
2,105,812	+		IAI47_09940	0.59	-1.8
2,105,819	+		IAI47_09940	0.60	+1.6
2,105,914	+		IAI47_09940	0.69	+1.2
2,105,914	+		IAI47_09940	0.69	-2.9
2,105,914	+		IAI47_09940	0.69	-1.1
2,105,914	+		IAI47_09940	0.69	+0.6
2,105,914	+		IAI47_09940	0.69	-1.2
2,105,915	-		IAI47_09940	0.69	-1.2
2,105,915	-		IAI47_09940	0.69	+0.9
2,105,915	-		IAI47_09940	0.69	+1.4
2,105,915	-		IAI47_09940	0.69	-0.9
2,105,915	-		IAI47_09940	0.69	+0.7
2,105,915	-		IAI47_09940	0.69	-3.2
2,105,915	-		IAI47_09940	0.69	-0.0
2,105,950	+		IAI47_09940	0.73	+0.4
2,105,981	+		IAI47_09940	0.76	-2.9
2,105,981	+		IAI47_09940	0.76	+1.4
2,105,981	+		IAI47_09940	0.76	-1.7
2,105,982	-		IAI47_09940	0.76	-1.2
2,105,982	-		IAI47_09940	0.76	+1.6
2,105,986	+		IAI47_09940	0.76	-1.7
2,105,986	+		IAI47_09940	0.76	+0.2
2,105,986	+		IAI47_09940	0.76	+0.8
2,105,987	-		IAI47_09940	0.76	-0.7
2,105,987	-		IAI47_09940	0.76	-2.5
2,105,987	-		IAI47_09940	0.76	+0.3
2,106,047	+		IAI47_09940	0.82	-2.9
2,106,131	+				+2.6
2,106,131	+				-1.4
2,106,131	+				+1.2
2,106,131	+				-0.6
2,106,132	-				-0.0
2,106,132	-				-2.7
2,106,132	-				-2.1
2,106,132	-				-1.7
2,106,132	-				+0.8
2,106,132	-				+1.0
2,106,132	-				+1.6
2,106,132	-				-2.8
2,106,175	+				+0.3
2,106,175	+				-0.5
2,106,176	-				-1.2
2,106,176	-				-1.7
2,106,179	+				-0.6
2,106,179	+				+1.8
2,106,179	+				+1.6
2,106,179	+				-0.9
2,106,180	-				+1.8
2,106,180	-				-0.0
2,106,198	-				+1.0
2,106,198	-				+1.1
2,106,250	-				-1.7
2,106,385	+				-1.9
2,106,385	+				+2.6
2,106,386	-				-0.1
2,106,505	+				+0.5
2,106,549	+				+1.0
2,106,549	+				+0.5
2,106,549	+				-2.9
2,106,561	+				+0.2
2,106,562	-				+1.3
2,106,564	+				-2.1
2,106,565	-				+0.3
2,106,586	-				-0.4
2,106,605	+				+2.3
2,106,606	-				-2.9
2,106,630	-				+0.7
2,106,665	+				-2.6
2,106,665	+				+1.0
2,106,682	+				-2.6
2,106,682	+				-2.2
2,106,683	-				+1.9
2,106,703	+				-2.9
2,106,729	+				-2.5
2,106,729	+				+1.6
2,106,729	+				+0.3
2,106,729	+				-1.5
2,106,729	+				-1.9
2,106,730	-				+0.8
2,106,730	-				+1.4
2,106,730	-				-2.9
2,106,730	-				-0.4
2,106,748	+				-1.7
2,106,748	+				+0.9
2,106,748	+				-2.4
2,106,748	+				-1.8
2,106,814	+		IAI47_09945	0.23	-2.1
2,106,814	+		IAI47_09945	0.23	-2.4
2,106,814	+		IAI47_09945	0.23	+1.1
2,106,814	+		IAI47_09945	0.23	+2.7
2,106,815	-		IAI47_09945	0.23	+1.9
2,106,824	+		IAI47_09945	0.25	-1.5
2,106,887	+		IAI47_09945	0.40	+1.6
2,106,896	-		IAI47_09945	0.42	-0.0
2,106,978	+		IAI47_09945	0.62	-0.7
2,106,979	-		IAI47_09945	0.62	-1.9
2,106,992	+		IAI47_09945	0.65	+2.9
2,107,009	-		IAI47_09945	0.69	+2.1
2,107,083	+		IAI47_09945	0.87	+0.1
2,107,083	+		IAI47_09945	0.87	+3.9
2,107,083	+		IAI47_09945	0.87	+0.5
2,107,084	-		IAI47_09945	0.87	+0.6
2,107,089	-		IAI47_09945	0.88	+2.5
2,107,089	-		IAI47_09945	0.88	+0.4
2,107,126	-				-0.4
2,107,126	-				-0.2
2,107,137	+				+0.6
2,107,138	-				-2.5
2,107,138	-				-0.4
2,107,138	-				-1.5
2,107,138	-				-0.4
2,107,138	-				+2.6
2,107,138	-				-2.1
2,107,145	+				-0.7
2,107,146	-				+3.2
2,107,234	+		IAI47_09950	0.18	+2.1
2,107,234	+		IAI47_09950	0.18	+1.8
2,107,234	+		IAI47_09950	0.18	-2.9
2,107,235	-		IAI47_09950	0.19	+3.8
2,107,235	-		IAI47_09950	0.19	-2.4
2,107,254	-		IAI47_09950	0.23	-0.9
2,107,297	+		IAI47_09950	0.33	-2.4
2,107,297	+		IAI47_09950	0.33	-0.7
2,107,297	+		IAI47_09950	0.33	-2.8
2,107,297	+		IAI47_09950	0.33	-2.1
2,107,297	+		IAI47_09950	0.33	+1.6
2,107,309	-		IAI47_09950	0.36	-2.6
2,107,309	-		IAI47_09950	0.36	-2.5
2,107,349	+		IAI47_09950	0.46	+1.5
2,107,350	-		IAI47_09950	0.46	-1.2
2,107,392	-		IAI47_09950	0.56	-1.7
2,107,398	-		IAI47_09950	0.57	+0.8
2,107,409	+		IAI47_09950	0.60	-1.1
2,107,476	+		IAI47_09950	0.76	+0.1
2,107,478	+		IAI47_09950	0.76	-1.8
2,107,499	+		IAI47_09950	0.81	-2.1
2,107,516	+		IAI47_09950	0.85	+0.0
2,107,517	-		IAI47_09950	0.86	-1.8
2,107,517	-		IAI47_09950	0.86	-1.2
2,107,517	-		IAI47_09950	0.86	+1.2
2,107,519	+		IAI47_09950	0.86	-1.9
2,107,519	+		IAI47_09950	0.86	-1.2
2,107,519	+		IAI47_09950	0.86	-0.1
2,107,519	+		IAI47_09950	0.86	-1.4
2,107,519	+		IAI47_09950	0.86	+0.1
2,107,519	+		IAI47_09950	0.86	-0.1
2,107,520	-		IAI47_09950	0.86	+2.6
2,107,520	-		IAI47_09950	0.86	-1.4
2,107,520	-		IAI47_09950	0.86	+1.1
2,107,520	-		IAI47_09950	0.86	-0.6
2,107,520	-		IAI47_09950	0.86	+0.6
2,107,520	-		IAI47_09950	0.86	-3.5
2,107,520	-		IAI47_09950	0.86	-0.9
2,107,661	-		IAI47_09955	0.32	+1.1
2,107,661	-		IAI47_09955	0.32	-0.2
2,107,731	+		IAI47_09955	0.56	-1.4
2,107,732	-		IAI47_09955	0.56	-0.9
2,107,807	+		IAI47_09955	0.83	+2.0
2,107,807	+		IAI47_09955	0.83	-2.5
2,107,807	+		IAI47_09955	0.83	-1.4
2,107,807	+		IAI47_09955	0.83	-1.4
2,107,808	-		IAI47_09955	0.83	-0.7
2,107,860	+				-3.1
2,107,861	-				-1.6
2,107,966	-				-3.0
2,108,013	+				+0.9
2,108,014	-				-2.4
2,108,014	-				+0.9
2,108,057	+				-1.5
2,108,057	+				+0.7
2,108,057	+				-1.8
2,108,057	+				-0.5
2,108,057	+				+1.2
2,108,057	+				-3.2
2,108,057	+				-1.5
2,108,057	+				+0.6
2,108,057	+				-2.2
2,108,057	+				-1.4
2,108,057	+				+0.4
2,108,058	-				-1.0
2,108,058	-				+1.2
2,108,058	-				+0.3
2,108,058	-				-2.2
2,108,058	-				+3.1
2,108,058	-				+3.9
2,108,058	-				+1.6
2,108,058	-				-0.6
2,108,061	+				+0.6
2,108,061	+				+1.3
2,108,061	+				-3.6
2,108,061	+				-1.0
2,108,061	+				-2.7
2,108,061	+				-0.4
2,108,062	-				-0.6
2,108,062	-				-2.4
2,108,062	-				+2.1
2,108,062	-				+0.2
2,108,062	-				-1.5
2,108,062	-				+0.4
2,108,062	-				-1.8
2,108,082	+				-1.2
2,108,082	+				-3.0
2,108,082	+				-2.1
2,108,082	+				-1.2
2,108,082	+				+1.8
2,108,083	-				+1.2
2,108,096	+				+1.5
2,108,096	+				-3.1
2,108,096	+				-0.7
2,108,097	-				+0.1
2,108,128	+				-0.7
2,108,138	+				-1.6
2,108,139	-				-0.1
2,108,139	-				+0.1