Strain Fitness in Pantoea sp. MT58 around IAI47_05735

Experiment: Ammonium chloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ammonium chloride (N)
1,194,304	+		IAI47_05725	0.47	+3.0
1,194,304	+		IAI47_05725	0.47	+0.3
1,194,304	+		IAI47_05725	0.47	+1.9
1,194,378	+		IAI47_05725	0.60	-2.8
1,194,378	+		IAI47_05725	0.60	+1.3
1,194,378	+		IAI47_05725	0.60	+1.9
1,194,378	+		IAI47_05725	0.60	-0.4
1,194,379	-		IAI47_05725	0.60	-3.0
1,194,393	+		IAI47_05725	0.62	-2.2
1,194,394	-		IAI47_05725	0.63	-1.7
1,194,394	-		IAI47_05725	0.63	+1.7
1,194,394	-		IAI47_05725	0.63	-0.3
1,194,394	-		IAI47_05725	0.63	-2.6
1,194,422	+		IAI47_05725	0.67	+1.4
1,194,422	+		IAI47_05725	0.67	+1.5
1,194,422	+		IAI47_05725	0.67	+0.9
1,194,422	+		IAI47_05725	0.67	-0.1
1,194,423	-		IAI47_05725	0.68	+0.5
1,194,434	+		IAI47_05725	0.69	+0.9
1,194,434	+		IAI47_05725	0.69	-0.7
1,194,435	-		IAI47_05725	0.70	-1.8
1,194,435	-		IAI47_05725	0.70	+1.5
1,194,435	-		IAI47_05725	0.70	-1.2
1,194,519	+		IAI47_05725	0.84	-2.9
1,194,519	+		IAI47_05725	0.84	+0.3
1,194,519	+		IAI47_05725	0.84	-2.7
1,194,519	+		IAI47_05725	0.84	-0.7
1,194,520	-		IAI47_05725	0.84	+1.7
1,194,520	-		IAI47_05725	0.84	-0.1
1,194,520	-		IAI47_05725	0.84	-3.5
1,194,520	-		IAI47_05725	0.84	-2.2
1,194,533	+		IAI47_05725	0.86	+3.3
1,194,533	+		IAI47_05725	0.86	-1.5
1,194,533	+		IAI47_05725	0.86	-0.7
1,194,534	-		IAI47_05725	0.86	-0.9
1,194,534	-		IAI47_05725	0.86	-0.7
1,194,534	-		IAI47_05725	0.86	-1.3
1,194,534	-		IAI47_05725	0.86	-1.7
1,194,593	+				+1.3
1,194,593	+				-3.4
1,194,593	+				-0.7
1,194,593	+				-0.8
1,194,594	-				+0.5
1,194,594	-				+0.8
1,194,594	-				+0.2
1,194,594	-				+2.4
1,194,594	-				+1.0
1,194,603	+				-0.4
1,194,604	-				+1.7
1,194,604	-				+1.7
1,194,609	+				+1.5
1,194,609	+				-2.2
1,194,609	+				+0.7
1,194,609	+				+2.4
1,194,609	+				-2.1
1,194,609	+				-2.8
1,194,610	-				+1.3
1,194,610	-				+0.1
1,194,610	-				-0.3
1,194,610	-				+0.7
1,194,610	-				+0.2
1,194,658	+				+1.3
1,194,659	-				+0.4
1,194,659	-				-0.4
1,194,741	-		IAI47_05730	0.19	+1.2
1,194,752	+		IAI47_05730	0.21	+0.4
1,194,753	-		IAI47_05730	0.21	+0.3
1,194,762	-		IAI47_05730	0.22	+0.3
1,194,907	+		IAI47_05730	0.43	-1.6
1,194,907	+		IAI47_05730	0.43	-2.0
1,194,907	+		IAI47_05730	0.43	+0.6
1,194,907	+		IAI47_05730	0.43	-0.6
1,194,984	-		IAI47_05730	0.55	-2.1
1,195,018	+		IAI47_05730	0.60	+0.3
1,195,022	+		IAI47_05730	0.60	+1.4
1,195,085	+		IAI47_05730	0.69	-0.7
1,195,085	+		IAI47_05730	0.69	-2.5
1,195,085	+		IAI47_05730	0.69	-2.9
1,195,085	+		IAI47_05730	0.69	-2.5
1,195,085	+		IAI47_05730	0.69	+1.8
1,195,085	+		IAI47_05730	0.69	+1.7
1,195,086	-		IAI47_05730	0.70	+2.6
1,195,086	-		IAI47_05730	0.70	-0.1
1,195,086	-		IAI47_05730	0.70	+0.2
1,195,086	-		IAI47_05730	0.70	-2.2
1,195,086	-		IAI47_05730	0.70	-0.1
1,195,086	-		IAI47_05730	0.70	+0.2
1,195,086	-		IAI47_05730	0.70	-0.9
1,195,086	-		IAI47_05730	0.70	-1.7
1,195,086	-		IAI47_05730	0.70	-2.1
1,195,086	-		IAI47_05730	0.70	+0.8
1,195,086	-		IAI47_05730	0.70	-0.5
1,195,086	-		IAI47_05730	0.70	-4.0
1,195,088	+		IAI47_05730	0.70	-3.0
1,195,088	+		IAI47_05730	0.70	-1.0
1,195,088	+		IAI47_05730	0.70	-2.1
1,195,088	+		IAI47_05730	0.70	+1.5
1,195,089	-		IAI47_05730	0.70	-0.4
1,195,089	-		IAI47_05730	0.70	-0.9
1,195,089	-		IAI47_05730	0.70	-1.7
1,195,089	-		IAI47_05730	0.70	+0.3
1,195,089	-		IAI47_05730	0.70	+0.1
1,195,112	+		IAI47_05730	0.73	-1.5
1,195,113	-		IAI47_05730	0.74	-0.4
1,195,113	-		IAI47_05730	0.74	-1.5
1,195,113	-		IAI47_05730	0.74	+1.5
1,195,113	-		IAI47_05730	0.74	+1.2
1,195,113	-		IAI47_05730	0.74	+3.3
1,195,113	-		IAI47_05730	0.74	+0.7
1,195,113	-		IAI47_05730	0.74	-3.0
1,195,130	+		IAI47_05730	0.76	-0.9
1,195,130	+		IAI47_05730	0.76	-0.6
1,195,130	+		IAI47_05730	0.76	-1.1
1,195,130	+		IAI47_05730	0.76	+0.9
1,195,131	-		IAI47_05730	0.76	-0.9
1,195,131	-		IAI47_05730	0.76	+1.1
1,195,131	-		IAI47_05730	0.76	+0.2
1,195,131	-		IAI47_05730	0.76	+0.5
1,195,149	-		IAI47_05730	0.79	+0.9
1,195,175	+		IAI47_05730	0.83	-0.7
1,195,175	+		IAI47_05730	0.83	-0.8
1,195,175	+		IAI47_05730	0.83	-2.5
1,195,202	+		IAI47_05730	0.87	+0.9
1,195,202	+		IAI47_05730	0.87	+1.0
1,195,202	+		IAI47_05730	0.87	+1.4
1,195,215	+		IAI47_05730	0.89	+0.7
1,195,229	+				-0.3
1,195,229	+				+0.4
1,195,229	+				-0.0
1,195,229	+				-2.4
1,195,230	-				-1.5
1,195,230	-				+1.7
1,195,232	+				-1.7
1,195,232	+				-1.4
1,195,233	-				-0.7
1,195,233	-				-0.0
1,195,275	+				+0.1
1,195,275	+				-2.1
1,195,275	+				-1.1
1,195,286	+				+0.5
1,195,287	-				-1.3
1,195,287	-				+0.3
1,195,287	-				+1.4
1,195,287	-				+0.7
1,195,297	+				+0.5
1,195,297	+				-0.7
1,195,297	+				-0.2
1,195,298	-				-0.8
1,195,327	+		IAI47_05735	0.24	+0.1
1,195,327	+		IAI47_05735	0.24	-2.0
1,195,365	+		IAI47_05735	0.50	+1.6
1,195,365	+		IAI47_05735	0.50	-1.5
1,195,365	+		IAI47_05735	0.50	-2.6
1,195,366	-		IAI47_05735	0.50	+1.8
1,195,366	-		IAI47_05735	0.50	-0.3
1,195,366	-		IAI47_05735	0.50	+3.3
1,195,366	-		IAI47_05735	0.50	+2.1
1,195,366	-		IAI47_05735	0.50	-1.0
1,195,366	-		IAI47_05735	0.50	+0.2
1,195,382	+		IAI47_05735	0.61	+0.9
1,195,383	-		IAI47_05735	0.62	-3.8
1,195,430	-				-1.7
1,195,454	+		IAI47_05740	0.13	-0.3
1,195,455	-		IAI47_05740	0.14	-1.0
1,195,455	-		IAI47_05740	0.14	-3.7
1,195,455	-		IAI47_05740	0.14	-2.0
1,195,513	+		IAI47_05740	0.43	+2.1
1,195,513	+		IAI47_05740	0.43	+0.5
1,195,513	+		IAI47_05740	0.43	+0.8
1,195,513	+		IAI47_05740	0.43	+0.2
1,195,514	-		IAI47_05740	0.43	+0.2
1,195,514	-		IAI47_05740	0.43	-0.9
1,195,514	-		IAI47_05740	0.43	+1.4
1,195,514	-		IAI47_05740	0.43	+0.2
1,195,514	-		IAI47_05740	0.43	-0.1
1,195,514	-		IAI47_05740	0.43	+2.2
1,195,526	+		IAI47_05740	0.49	+0.5
1,195,526	+		IAI47_05740	0.49	+3.7
1,195,526	+		IAI47_05740	0.49	-2.4
1,195,526	+		IAI47_05740	0.49	-2.5
1,195,526	+		IAI47_05740	0.49	+1.9
1,195,527	-		IAI47_05740	0.50	+0.7
1,195,527	-		IAI47_05740	0.50	-2.1
1,195,527	-		IAI47_05740	0.50	-2.8
1,195,527	-		IAI47_05740	0.50	-2.4
1,195,527	-		IAI47_05740	0.50	+1.8
1,195,558	+		IAI47_05740	0.66	-0.0
1,195,558	+		IAI47_05740	0.66	+1.4
1,195,558	+		IAI47_05740	0.66	+0.7
1,195,558	+		IAI47_05740	0.66	+0.6
1,195,559	-		IAI47_05740	0.66	-1.1
1,195,616	+				+0.1
1,195,715	+		IAI47_05745	0.66	-1.0
1,195,715	+		IAI47_05745	0.66	-1.8
1,195,715	+		IAI47_05745	0.66	-1.0
1,195,755	+				+1.4
1,195,755	+				+1.5
1,195,755	+				-1.6
1,195,755	+				+3.6
1,195,755	+				+0.7
1,195,755	+				+0.4
1,195,755	+				-0.5
1,195,755	-				-1.3
1,195,756	-				+2.5
1,195,756	-				+1.5
1,195,756	-				+2.0
1,195,756	-				+4.3
1,195,756	-				+1.5
1,195,790	+				+0.5
1,195,790	+				+2.2
1,195,790	+				+1.7
1,195,790	+				-1.5
1,195,790	+				+0.8
1,195,791	-				+0.2
1,195,791	-				-1.8
1,195,791	-				-0.3
1,195,793	+				-2.2
1,195,793	+				+1.1
1,195,793	+				+0.1
1,195,793	+				+2.0
1,195,793	+				-1.2
1,195,793	+				+3.0
1,195,793	+				-0.5
1,195,794	-				+0.5
1,195,794	-				+1.3
1,195,794	-				+0.7
1,195,806	+				+2.6
1,195,806	+				-1.1
1,195,863	+				-3.6
1,195,864	-				-3.2
1,195,882	+				-3.3
1,196,022	+		IAI47_05750	0.24	-2.7
1,196,022	+		IAI47_05750	0.24	-1.5
1,196,022	+		IAI47_05750	0.24	-1.2
1,196,022	+		IAI47_05750	0.24	+1.0
1,196,023	-		IAI47_05750	0.24	-0.3
1,196,023	-		IAI47_05750	0.24	+1.7
1,196,149	-		IAI47_05750	0.37	-0.5