Strain Fitness in Pantoea sp. MT58 around IAI47_04450

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_04440 and IAI47_04445 are separated by 67 nucleotidesIAI47_04445 and IAI47_04450 are separated by 142 nucleotidesIAI47_04450 and IAI47_04455 are separated by 198 nucleotides IAI47_04440: IAI47_04440 - 16S ribosomal RNA, at 931,843 to 933,389 _04440 IAI47_04445: IAI47_04445 - tRNA-Ile, at 933,457 to 933,533 _04445 IAI47_04450: IAI47_04450 - tRNA-Ala, at 933,676 to 933,751 _04450 IAI47_04455: IAI47_04455 - 23S ribosomal RNA, at 933,950 to 936,884 _04455 Position (kb) 933 934Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 933.554 kb on + strandat 933.554 kb on + strandat 933.554 kb on + strandat 933.554 kb on + strandat 933.554 kb on + strandat 933.741 kb on + strand, within IAI47_04450at 933.741 kb on + strand, within IAI47_04450at 933.741 kb on + strand, within IAI47_04450at 933.741 kb on + strand, within IAI47_04450at 933.752 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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933,554 + -1.8
933,554 + -0.7
933,554 + -1.4
933,554 + +1.9
933,554 + -1.0
933,741 + IAI47_04450 0.86 -3.4
933,741 + IAI47_04450 0.86 -2.2
933,741 + IAI47_04450 0.86 -2.3
933,741 + IAI47_04450 0.86 -0.2
933,752 + -2.8

Or see this region's nucleotide sequence