Experiment: Ammonium chloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04045 and IAI47_04050 are separated by 169 nucleotides IAI47_04050 and IAI47_04055 are separated by 62 nucleotides
IAI47_04045: IAI47_04045 - LOG family protein, at 845,248 to 846,612
_04045
IAI47_04050: IAI47_04050 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 846,782 to 847,627
_04050
IAI47_04055: IAI47_04055 - SecY-interacting protein, at 847,690 to 848,238
_04055
Position (kb) 846
847
848 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 845.813 kb on + strand, within IAI47_04045 at 845.813 kb on + strand, within IAI47_04045 at 845.814 kb on - strand, within IAI47_04045 at 845.814 kb on - strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.853 kb on + strand, within IAI47_04045 at 845.854 kb on - strand, within IAI47_04045 at 845.854 kb on - strand, within IAI47_04045 at 845.980 kb on - strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.072 kb on + strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.073 kb on - strand, within IAI47_04045 at 846.116 kb on + strand, within IAI47_04045 at 846.116 kb on + strand, within IAI47_04045 at 846.117 kb on - strand, within IAI47_04045 at 846.117 kb on - strand, within IAI47_04045 at 846.117 kb on - strand, within IAI47_04045 at 846.122 kb on + strand, within IAI47_04045 at 846.123 kb on - strand, within IAI47_04045 at 846.160 kb on + strand, within IAI47_04045 at 846.160 kb on + strand, within IAI47_04045 at 846.160 kb on + strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.161 kb on - strand, within IAI47_04045 at 846.201 kb on + strand, within IAI47_04045 at 846.202 kb on - strand, within IAI47_04045 at 846.521 kb on + strand at 846.521 kb on + strand at 846.522 kb on - strand at 846.553 kb on - strand at 846.600 kb on + strand at 846.600 kb on + strand at 846.600 kb on + strand at 846.624 kb on + strand at 846.625 kb on - strand at 846.625 kb on - strand at 846.711 kb on + strand at 846.711 kb on + strand at 846.711 kb on + strand at 846.712 kb on - strand at 846.712 kb on - strand at 846.750 kb on + strand at 846.751 kb on - strand at 846.751 kb on - strand at 846.751 kb on - strand at 846.783 kb on + strand at 846.783 kb on + strand at 846.783 kb on + strand at 846.783 kb on + strand at 846.784 kb on - strand at 846.784 kb on - strand at 846.867 kb on + strand, within IAI47_04050 at 846.867 kb on + strand, within IAI47_04050 at 846.867 kb on + strand, within IAI47_04050 at 846.876 kb on + strand, within IAI47_04050 at 846.876 kb on + strand, within IAI47_04050 at 846.877 kb on - strand, within IAI47_04050 at 846.920 kb on - strand, within IAI47_04050 at 846.920 kb on - strand, within IAI47_04050 at 846.955 kb on + strand, within IAI47_04050 at 846.956 kb on - strand, within IAI47_04050 at 846.956 kb on - strand, within IAI47_04050 at 846.956 kb on - strand, within IAI47_04050 at 846.978 kb on + strand, within IAI47_04050 at 846.979 kb on - strand, within IAI47_04050 at 847.131 kb on + strand, within IAI47_04050 at 847.131 kb on + strand, within IAI47_04050 at 847.131 kb on + strand, within IAI47_04050 at 847.132 kb on - strand, within IAI47_04050 at 847.132 kb on - strand, within IAI47_04050 at 847.160 kb on - strand, within IAI47_04050 at 847.166 kb on - strand, within IAI47_04050 at 847.180 kb on + strand, within IAI47_04050 at 847.180 kb on + strand, within IAI47_04050 at 847.181 kb on - strand, within IAI47_04050 at 847.181 kb on - strand, within IAI47_04050 at 847.181 kb on - strand, within IAI47_04050 at 847.181 kb on - strand, within IAI47_04050 at 847.181 kb on - strand, within IAI47_04050 at 847.225 kb on + strand, within IAI47_04050 at 847.341 kb on + strand, within IAI47_04050 at 847.341 kb on + strand, within IAI47_04050 at 847.341 kb on + strand, within IAI47_04050 at 847.341 kb on + strand, within IAI47_04050 at 847.341 kb on + strand, within IAI47_04050 at 847.342 kb on - strand, within IAI47_04050 at 847.342 kb on - strand, within IAI47_04050 at 847.342 kb on - strand, within IAI47_04050 at 847.342 kb on - strand, within IAI47_04050 at 847.342 kb on - strand, within IAI47_04050 at 847.348 kb on + strand, within IAI47_04050 at 847.349 kb on - strand, within IAI47_04050 at 847.418 kb on + strand, within IAI47_04050 at 847.426 kb on + strand, within IAI47_04050 at 847.426 kb on + strand, within IAI47_04050 at 847.426 kb on + strand, within IAI47_04050 at 847.426 kb on + strand, within IAI47_04050 at 847.427 kb on - strand, within IAI47_04050 at 847.427 kb on - strand, within IAI47_04050 at 847.427 kb on - strand, within IAI47_04050 at 847.449 kb on + strand, within IAI47_04050 at 847.449 kb on + strand, within IAI47_04050 at 847.450 kb on - strand, within IAI47_04050 at 847.450 kb on - strand, within IAI47_04050 at 847.450 kb on - strand, within IAI47_04050 at 847.541 kb on + strand, within IAI47_04050 at 847.541 kb on + strand, within IAI47_04050 at 847.541 kb on + strand, within IAI47_04050 at 847.541 kb on + strand, within IAI47_04050 at 847.542 kb on - strand, within IAI47_04050 at 847.542 kb on - strand, within IAI47_04050 at 847.542 kb on - strand, within IAI47_04050 at 847.554 kb on + strand at 847.555 kb on - strand at 847.555 kb on - strand at 847.555 kb on - strand at 847.566 kb on + strand at 847.566 kb on + strand at 847.567 kb on - strand at 847.567 kb on - strand at 847.567 kb on - strand at 847.594 kb on + strand at 847.621 kb on + strand at 847.621 kb on + strand at 847.622 kb on - strand at 847.622 kb on - strand at 847.622 kb on - strand at 847.646 kb on + strand at 847.646 kb on + strand at 847.659 kb on + strand at 847.659 kb on + strand at 847.665 kb on + strand at 847.666 kb on - strand at 847.685 kb on + strand at 847.685 kb on + strand at 847.685 kb on + strand at 847.685 kb on + strand at 847.686 kb on - strand at 847.686 kb on - strand at 847.725 kb on + strand at 847.725 kb on + strand at 847.725 kb on + strand at 847.725 kb on + strand at 847.725 kb on + strand at 847.728 kb on + strand at 847.789 kb on + strand, within IAI47_04055 at 847.789 kb on + strand, within IAI47_04055 at 847.789 kb on + strand, within IAI47_04055 at 847.789 kb on + strand, within IAI47_04055 at 847.789 kb on + strand, within IAI47_04055 at 847.790 kb on - strand, within IAI47_04055 at 847.857 kb on + strand, within IAI47_04055 at 847.858 kb on - strand, within IAI47_04055 at 847.897 kb on + strand, within IAI47_04055 at 847.930 kb on + strand, within IAI47_04055 at 847.930 kb on + strand, within IAI47_04055 at 847.931 kb on - strand, within IAI47_04055 at 847.931 kb on - strand, within IAI47_04055 at 847.931 kb on - strand, within IAI47_04055 at 847.933 kb on - strand, within IAI47_04055 at 847.953 kb on + strand, within IAI47_04055 at 847.953 kb on + strand, within IAI47_04055 at 847.953 kb on + strand, within IAI47_04055 at 847.953 kb on + strand, within IAI47_04055 at 847.954 kb on - strand, within IAI47_04055 at 848.079 kb on + strand, within IAI47_04055 at 848.079 kb on + strand, within IAI47_04055 at 848.079 kb on + strand, within IAI47_04055 at 848.079 kb on + strand, within IAI47_04055 at 848.080 kb on - strand, within IAI47_04055 at 848.088 kb on + strand, within IAI47_04055 at 848.089 kb on - strand, within IAI47_04055 at 848.130 kb on + strand, within IAI47_04055 at 848.130 kb on + strand, within IAI47_04055 at 848.130 kb on + strand, within IAI47_04055 at 848.131 kb on - strand, within IAI47_04055 at 848.131 kb on - strand, within IAI47_04055 at 848.219 kb on + strand at 848.219 kb on + strand at 848.258 kb on + strand at 848.258 kb on + strand at 848.259 kb on - strand at 848.259 kb on - strand at 848.270 kb on + strand at 848.270 kb on + strand at 848.270 kb on + strand at 848.270 kb on + strand at 848.271 kb on - strand at 848.277 kb on + strand at 848.277 kb on + strand at 848.277 kb on + strand at 848.277 kb on + strand at 848.278 kb on - strand at 848.278 kb on - strand at 848.301 kb on + strand at 848.301 kb on + strand at 848.301 kb on + strand at 848.301 kb on + strand at 848.302 kb on - strand at 848.302 kb on - strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.303 kb on + strand at 848.304 kb on - strand at 848.304 kb on - strand at 848.304 kb on - strand at 848.304 kb on - strand at 848.310 kb on + strand at 848.310 kb on + strand at 848.310 kb on + strand at 848.311 kb on - strand at 848.311 kb on - strand at 848.315 kb on + strand at 848.316 kb on - strand at 848.316 kb on - strand at 848.358 kb on + strand at 848.358 kb on + strand at 848.359 kb on - strand at 848.359 kb on - strand at 848.368 kb on + strand at 848.376 kb on + strand at 848.411 kb on + strand at 848.411 kb on + strand at 848.412 kb on - strand at 848.412 kb on - strand at 848.412 kb on - strand at 848.474 kb on + strand at 848.474 kb on + strand at 848.474 kb on + strand at 848.475 kb on - strand at 848.491 kb on + strand at 848.491 kb on + strand at 848.491 kb on + strand at 848.491 kb on + strand at 848.492 kb on - strand at 848.492 kb on - strand at 848.492 kb on - strand at 848.492 kb on - strand at 848.492 kb on - strand at 848.511 kb on + strand at 848.512 kb on - strand at 848.521 kb on + strand at 848.570 kb on + strand at 848.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ammonium chloride (N) remove 845,813 + IAI47_04045 0.41 -0.3 845,813 + IAI47_04045 0.41 +1.4 845,814 - IAI47_04045 0.41 +0.7 845,814 - IAI47_04045 0.41 +3.1 845,853 + IAI47_04045 0.44 +0.0 845,853 + IAI47_04045 0.44 +1.0 845,853 + IAI47_04045 0.44 -0.3 845,853 + IAI47_04045 0.44 +0.6 845,854 - IAI47_04045 0.44 -0.8 845,854 - IAI47_04045 0.44 -1.0 845,980 - IAI47_04045 0.54 +0.1 846,072 + IAI47_04045 0.60 -2.0 846,072 + IAI47_04045 0.60 -0.7 846,072 + IAI47_04045 0.60 +1.4 846,072 + IAI47_04045 0.60 +0.2 846,072 + IAI47_04045 0.60 -0.4 846,072 + IAI47_04045 0.60 +3.2 846,072 + IAI47_04045 0.60 +0.4 846,073 - IAI47_04045 0.60 +3.1 846,073 - IAI47_04045 0.60 +0.7 846,073 - IAI47_04045 0.60 +0.6 846,073 - IAI47_04045 0.60 -1.3 846,073 - IAI47_04045 0.60 +2.8 846,073 - IAI47_04045 0.60 +2.5 846,116 + IAI47_04045 0.64 +2.3 846,116 + IAI47_04045 0.64 +3.2 846,117 - IAI47_04045 0.64 +1.2 846,117 - IAI47_04045 0.64 -0.1 846,117 - IAI47_04045 0.64 +0.2 846,122 + IAI47_04045 0.64 +1.6 846,123 - IAI47_04045 0.64 +0.2 846,160 + IAI47_04045 0.67 -3.0 846,160 + IAI47_04045 0.67 +2.4 846,160 + IAI47_04045 0.67 -0.5 846,161 - IAI47_04045 0.67 -2.2 846,161 - IAI47_04045 0.67 -0.5 846,161 - IAI47_04045 0.67 -2.0 846,161 - IAI47_04045 0.67 +3.3 846,201 + IAI47_04045 0.70 +1.6 846,202 - IAI47_04045 0.70 -2.5 846,521 + -1.6 846,521 + -0.1 846,522 - -2.1 846,553 - -2.9 846,600 + -3.2 846,600 + -1.2 846,600 + +2.0 846,624 + -0.1 846,625 - -2.1 846,625 - +0.2 846,711 + -3.3 846,711 + -3.7 846,711 + -2.3 846,712 - +2.3 846,712 - -3.0 846,750 + +2.4 846,751 - -1.6 846,751 - -2.2 846,751 - +0.2 846,783 + +0.3 846,783 + -0.7 846,783 + +0.2 846,783 + -0.4 846,784 - +1.6 846,784 - -0.7 846,867 + IAI47_04050 0.10 +3.4 846,867 + IAI47_04050 0.10 -2.7 846,867 + IAI47_04050 0.10 +1.9 846,876 + IAI47_04050 0.11 +1.0 846,876 + IAI47_04050 0.11 +0.7 846,877 - IAI47_04050 0.11 +0.2 846,920 - IAI47_04050 0.16 +0.2 846,920 - IAI47_04050 0.16 +1.1 846,955 + IAI47_04050 0.20 +0.4 846,956 - IAI47_04050 0.21 -4.4 846,956 - IAI47_04050 0.21 -3.6 846,956 - IAI47_04050 0.21 +2.6 846,978 + IAI47_04050 0.23 +5.2 846,979 - IAI47_04050 0.23 -0.8 847,131 + IAI47_04050 0.41 -0.5 847,131 + IAI47_04050 0.41 +1.6 847,131 + IAI47_04050 0.41 +2.8 847,132 - IAI47_04050 0.41 -0.4 847,132 - IAI47_04050 0.41 +0.1 847,160 - IAI47_04050 0.45 +1.1 847,166 - IAI47_04050 0.45 +2.2 847,180 + IAI47_04050 0.47 -2.6 847,180 + IAI47_04050 0.47 +0.6 847,181 - IAI47_04050 0.47 -1.2 847,181 - IAI47_04050 0.47 -0.5 847,181 - IAI47_04050 0.47 -2.3 847,181 - IAI47_04050 0.47 +2.4 847,181 - IAI47_04050 0.47 -1.4 847,225 + IAI47_04050 0.52 +1.1 847,341 + IAI47_04050 0.66 +1.6 847,341 + IAI47_04050 0.66 +1.6 847,341 + IAI47_04050 0.66 -3.6 847,341 + IAI47_04050 0.66 -2.8 847,341 + IAI47_04050 0.66 +0.8 847,342 - IAI47_04050 0.66 +0.8 847,342 - IAI47_04050 0.66 -3.2 847,342 - IAI47_04050 0.66 -1.0 847,342 - IAI47_04050 0.66 -2.6 847,342 - IAI47_04050 0.66 -2.6 847,348 + IAI47_04050 0.67 -0.2 847,349 - IAI47_04050 0.67 -1.0 847,418 + IAI47_04050 0.75 +2.4 847,426 + IAI47_04050 0.76 +1.7 847,426 + IAI47_04050 0.76 +2.1 847,426 + IAI47_04050 0.76 +1.4 847,426 + IAI47_04050 0.76 +1.3 847,427 - IAI47_04050 0.76 +1.1 847,427 - IAI47_04050 0.76 -0.7 847,427 - IAI47_04050 0.76 -3.1 847,449 + IAI47_04050 0.79 -1.2 847,449 + IAI47_04050 0.79 +1.6 847,450 - IAI47_04050 0.79 +2.2 847,450 - IAI47_04050 0.79 +0.2 847,450 - IAI47_04050 0.79 +0.7 847,541 + IAI47_04050 0.90 +2.4 847,541 + IAI47_04050 0.90 -1.2 847,541 + IAI47_04050 0.90 +1.1 847,541 + IAI47_04050 0.90 -3.4 847,542 - IAI47_04050 0.90 -0.9 847,542 - IAI47_04050 0.90 +0.3 847,542 - IAI47_04050 0.90 +0.9 847,554 + +0.4 847,555 - +1.9 847,555 - +0.4 847,555 - +2.4 847,566 + +0.6 847,566 + +1.5 847,567 - +0.8 847,567 - -2.8 847,567 - -0.4 847,594 + +1.5 847,621 + +0.6 847,621 + +0.3 847,622 - -1.5 847,622 - -1.2 847,622 - -1.5 847,646 + +0.2 847,646 + -0.6 847,659 + -0.7 847,659 + +1.1 847,665 + -1.4 847,666 - -2.5 847,685 + -2.9 847,685 + -2.5 847,685 + +1.6 847,685 + +0.6 847,686 - -3.4 847,686 - +1.6 847,725 + +2.0 847,725 + -2.1 847,725 + -2.3 847,725 + -2.2 847,725 + +0.7 847,728 + -1.4 847,789 + IAI47_04055 0.18 -0.3 847,789 + IAI47_04055 0.18 -3.4 847,789 + IAI47_04055 0.18 +1.6 847,789 + IAI47_04055 0.18 +0.6 847,789 + IAI47_04055 0.18 +0.1 847,790 - IAI47_04055 0.18 +1.5 847,857 + IAI47_04055 0.30 -4.0 847,858 - IAI47_04055 0.31 -2.0 847,897 + IAI47_04055 0.38 +1.4 847,930 + IAI47_04055 0.44 +2.3 847,930 + IAI47_04055 0.44 -0.6 847,931 - IAI47_04055 0.44 +0.3 847,931 - IAI47_04055 0.44 -2.6 847,931 - IAI47_04055 0.44 -2.8 847,933 - IAI47_04055 0.44 +4.1 847,953 + IAI47_04055 0.48 +1.3 847,953 + IAI47_04055 0.48 -0.4 847,953 + IAI47_04055 0.48 +2.4 847,953 + IAI47_04055 0.48 -3.4 847,954 - IAI47_04055 0.48 -1.2 848,079 + IAI47_04055 0.71 -0.6 848,079 + IAI47_04055 0.71 -0.3 848,079 + IAI47_04055 0.71 -2.6 848,079 + IAI47_04055 0.71 +1.7 848,080 - IAI47_04055 0.71 +1.6 848,088 + IAI47_04055 0.72 +2.5 848,089 - IAI47_04055 0.73 +1.3 848,130 + IAI47_04055 0.80 +0.2 848,130 + IAI47_04055 0.80 -1.7 848,130 + IAI47_04055 0.80 +0.3 848,131 - IAI47_04055 0.80 +1.5 848,131 - IAI47_04055 0.80 -0.3 848,219 + +0.2 848,219 + +0.2 848,258 + +0.7 848,258 + -2.2 848,259 - -0.5 848,259 - +1.0 848,270 + -0.7 848,270 + -3.2 848,270 + +0.9 848,270 + +1.8 848,271 - -0.8 848,277 + -1.8 848,277 + -1.9 848,277 + +1.0 848,277 + -0.8 848,278 - -0.2 848,278 - -0.7 848,301 + +0.3 848,301 + +1.0 848,301 + -2.1 848,301 + -2.7 848,302 - -3.2 848,302 - +0.9 848,303 + -3.9 848,303 + -3.8 848,303 + -3.7 848,303 + +0.5 848,303 + -1.0 848,303 + +0.3 848,303 + -4.2 848,303 + -3.7 848,304 - -0.7 848,304 - -2.6 848,304 - +0.8 848,304 - -0.9 848,310 + -0.9 848,310 + +1.5 848,310 + -0.3 848,311 - +2.1 848,311 - -3.0 848,315 + -1.4 848,316 - -2.6 848,316 - +1.5 848,358 + -1.2 848,358 + +0.9 848,359 - +1.2 848,359 - -1.7 848,368 + -0.6 848,376 + +1.5 848,411 + +1.4 848,411 + -2.0 848,412 - -0.9 848,412 - -0.1 848,412 - +0.5 848,474 + -0.0 848,474 + -1.1 848,474 + -1.9 848,475 - -2.5 848,491 + -2.6 848,491 + -2.4 848,491 + -1.4 848,491 + +0.2 848,492 - +0.8 848,492 - -0.1 848,492 - +0.3 848,492 - -0.0 848,492 - -1.1 848,511 + +1.0 848,512 - +0.7 848,521 + +1.9 848,570 + +0.8 848,571 - +1.2
Or see this region's nucleotide sequence