Strain Fitness in Pantoea sp. MT58 around IAI47_03710

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03700 and IAI47_03705 are separated by 125 nucleotidesIAI47_03705 and IAI47_03710 are separated by 144 nucleotidesIAI47_03710 and IAI47_03715 are separated by 30 nucleotides IAI47_03700: IAI47_03700 - small-conductance mechanosensitive channel MscS, at 772,826 to 773,707 _03700 IAI47_03705: IAI47_03705 - arginine exporter ArgO, at 773,833 to 774,456 _03705 IAI47_03710: IAI47_03710 - oxidative stress defense protein, at 774,601 to 775,326 _03710 IAI47_03715: IAI47_03715 - LysR family transcriptional regulator ArgP, at 775,357 to 776,262 _03715 Position (kb) 774 775 776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 773.602 kb on + strand, within IAI47_03700at 773.602 kb on + strand, within IAI47_03700at 773.603 kb on - strand, within IAI47_03700at 773.603 kb on - strand, within IAI47_03700at 773.603 kb on - strand, within IAI47_03700at 773.603 kb on - strand, within IAI47_03700at 773.603 kb on - strand, within IAI47_03700at 773.626 kb on + strandat 773.626 kb on + strandat 773.626 kb on + strandat 773.627 kb on - strandat 773.677 kb on + strandat 773.677 kb on + strandat 773.677 kb on + strandat 773.677 kb on + strandat 773.677 kb on + strandat 773.677 kb on + strandat 773.677 kb on + strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.678 kb on - strandat 773.705 kb on + strandat 773.783 kb on + strandat 773.783 kb on + strandat 773.784 kb on - strandat 773.794 kb on + strandat 773.794 kb on + strandat 773.794 kb on + strandat 773.795 kb on - strandat 773.795 kb on - strandat 773.795 kb on - strandat 773.795 kb on - strandat 773.795 kb on - strandat 773.795 kb on - strandat 773.796 kb on + strandat 773.796 kb on + strandat 773.797 kb on - strandat 773.797 kb on - strandat 773.797 kb on - strandat 773.827 kb on - strandat 773.837 kb on + strandat 773.837 kb on + strandat 773.837 kb on + strandat 773.838 kb on - strandat 773.846 kb on - strandat 773.846 kb on - strandat 773.935 kb on + strand, within IAI47_03705at 773.935 kb on + strand, within IAI47_03705at 773.935 kb on + strand, within IAI47_03705at 773.935 kb on + strand, within IAI47_03705at 773.936 kb on - strand, within IAI47_03705at 773.936 kb on - strand, within IAI47_03705at 773.936 kb on - strand, within IAI47_03705at 773.974 kb on - strand, within IAI47_03705at 773.984 kb on + strand, within IAI47_03705at 773.984 kb on + strand, within IAI47_03705at 773.984 kb on + strand, within IAI47_03705at 773.985 kb on - strand, within IAI47_03705at 773.985 kb on - strand, within IAI47_03705at 773.985 kb on - strand, within IAI47_03705at 773.985 kb on - strand, within IAI47_03705at 774.017 kb on + strand, within IAI47_03705at 774.017 kb on + strand, within IAI47_03705at 774.017 kb on + strand, within IAI47_03705at 774.017 kb on + strand, within IAI47_03705at 774.018 kb on - strand, within IAI47_03705at 774.062 kb on + strand, within IAI47_03705at 774.079 kb on + strand, within IAI47_03705at 774.079 kb on + strand, within IAI47_03705at 774.080 kb on - strand, within IAI47_03705at 774.080 kb on - strand, within IAI47_03705at 774.080 kb on - strand, within IAI47_03705at 774.165 kb on + strand, within IAI47_03705at 774.208 kb on + strand, within IAI47_03705at 774.384 kb on + strand, within IAI47_03705at 774.385 kb on - strand, within IAI47_03705at 774.385 kb on - strand, within IAI47_03705at 774.404 kb on + strandat 774.415 kb on - strandat 774.415 kb on - strandat 774.441 kb on + strandat 774.441 kb on + strandat 774.442 kb on - strandat 774.442 kb on - strandat 774.442 kb on - strandat 774.460 kb on + strandat 774.460 kb on + strandat 774.460 kb on + strandat 774.460 kb on + strandat 774.461 kb on - strandat 774.461 kb on - strandat 774.479 kb on + strandat 774.480 kb on - strandat 774.510 kb on + strandat 774.510 kb on + strandat 774.510 kb on + strandat 774.511 kb on - strandat 774.511 kb on - strandat 774.535 kb on + strandat 774.575 kb on + strandat 774.575 kb on + strandat 774.576 kb on - strandat 774.576 kb on - strandat 774.576 kb on - strandat 774.659 kb on + strandat 774.660 kb on - strandat 774.747 kb on + strand, within IAI47_03710at 774.747 kb on + strand, within IAI47_03710at 774.747 kb on + strand, within IAI47_03710at 774.747 kb on + strand, within IAI47_03710at 774.748 kb on - strand, within IAI47_03710at 774.748 kb on - strand, within IAI47_03710at 774.801 kb on + strand, within IAI47_03710at 774.802 kb on - strand, within IAI47_03710at 774.818 kb on - strand, within IAI47_03710at 774.859 kb on - strand, within IAI47_03710at 774.859 kb on - strand, within IAI47_03710at 774.892 kb on + strand, within IAI47_03710at 774.892 kb on + strand, within IAI47_03710at 774.898 kb on + strand, within IAI47_03710at 774.899 kb on - strand, within IAI47_03710at 774.899 kb on - strand, within IAI47_03710at 774.912 kb on + strand, within IAI47_03710at 774.912 kb on + strand, within IAI47_03710at 774.912 kb on + strand, within IAI47_03710at 774.920 kb on + strand, within IAI47_03710at 774.950 kb on + strand, within IAI47_03710at 774.950 kb on + strand, within IAI47_03710at 774.950 kb on + strand, within IAI47_03710at 775.029 kb on + strand, within IAI47_03710at 775.030 kb on - strand, within IAI47_03710at 775.030 kb on - strand, within IAI47_03710at 775.041 kb on - strand, within IAI47_03710at 775.041 kb on - strand, within IAI47_03710at 775.041 kb on - strand, within IAI47_03710at 775.064 kb on - strand, within IAI47_03710at 775.064 kb on - strand, within IAI47_03710at 775.064 kb on - strand, within IAI47_03710at 775.065 kb on + strand, within IAI47_03710at 775.065 kb on + strand, within IAI47_03710at 775.066 kb on - strand, within IAI47_03710at 775.066 kb on - strand, within IAI47_03710at 775.066 kb on - strand, within IAI47_03710at 775.092 kb on + strand, within IAI47_03710at 775.134 kb on + strand, within IAI47_03710at 775.156 kb on + strand, within IAI47_03710at 775.157 kb on - strand, within IAI47_03710at 775.157 kb on - strand, within IAI47_03710at 775.157 kb on - strand, within IAI47_03710at 775.183 kb on + strand, within IAI47_03710at 775.183 kb on + strand, within IAI47_03710at 775.183 kb on + strand, within IAI47_03710at 775.184 kb on - strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.210 kb on + strand, within IAI47_03710at 775.211 kb on - strand, within IAI47_03710at 775.233 kb on + strand, within IAI47_03710at 775.233 kb on + strand, within IAI47_03710at 775.233 kb on + strand, within IAI47_03710at 775.234 kb on - strand, within IAI47_03710at 775.234 kb on - strand, within IAI47_03710at 775.234 kb on - strand, within IAI47_03710at 775.234 kb on - strand, within IAI47_03710at 775.252 kb on + strand, within IAI47_03710at 775.252 kb on + strand, within IAI47_03710at 775.252 kb on + strand, within IAI47_03710at 775.252 kb on + strand, within IAI47_03710at 775.252 kb on + strand, within IAI47_03710at 775.252 kb on + strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.253 kb on - strand, within IAI47_03710at 775.292 kb on + strandat 775.292 kb on + strandat 775.292 kb on + strandat 775.292 kb on + strandat 775.292 kb on + strandat 775.292 kb on + strandat 775.293 kb on - strandat 775.293 kb on - strandat 775.293 kb on - strandat 775.293 kb on - strandat 775.293 kb on - strandat 775.293 kb on - strandat 775.305 kb on + strandat 775.305 kb on + strandat 775.305 kb on + strandat 775.306 kb on - strandat 775.306 kb on - strandat 775.324 kb on + strandat 775.324 kb on + strandat 775.460 kb on + strand, within IAI47_03715at 775.460 kb on + strand, within IAI47_03715at 775.460 kb on + strand, within IAI47_03715at 775.460 kb on + strand, within IAI47_03715at 775.460 kb on + strand, within IAI47_03715at 775.461 kb on - strand, within IAI47_03715at 775.461 kb on - strand, within IAI47_03715at 775.461 kb on - strand, within IAI47_03715at 775.461 kb on - strand, within IAI47_03715at 775.478 kb on + strand, within IAI47_03715at 775.478 kb on + strand, within IAI47_03715at 775.478 kb on + strand, within IAI47_03715at 775.478 kb on + strand, within IAI47_03715at 775.478 kb on + strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.479 kb on - strand, within IAI47_03715at 775.501 kb on + strand, within IAI47_03715at 775.502 kb on - strand, within IAI47_03715at 775.548 kb on + strand, within IAI47_03715at 775.548 kb on + strand, within IAI47_03715at 775.548 kb on + strand, within IAI47_03715at 775.549 kb on - strand, within IAI47_03715at 775.549 kb on - strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.665 kb on + strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.666 kb on - strand, within IAI47_03715at 775.827 kb on + strand, within IAI47_03715at 775.827 kb on + strand, within IAI47_03715at 775.827 kb on + strand, within IAI47_03715at 775.828 kb on - strand, within IAI47_03715at 776.066 kb on - strand, within IAI47_03715at 776.066 kb on - strand, within IAI47_03715at 776.175 kb on + strandat 776.175 kb on + strandat 776.176 kb on - strandat 776.176 kb on - strandat 776.176 kb on - strandat 776.264 kb on - strandat 776.264 kb on - strandat 776.264 kb on - strandat 776.266 kb on + strandat 776.266 kb on + strandat 776.267 kb on - strandat 776.267 kb on - strandat 776.267 kb on - strandat 776.295 kb on + strandat 776.295 kb on + strandat 776.295 kb on + strandat 776.295 kb on + strandat 776.295 kb on + strandat 776.296 kb on - strandat 776.296 kb on - strandat 776.311 kb on + strandat 776.311 kb on + strandat 776.312 kb on - strandat 776.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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773,602 + IAI47_03700 0.88 -1.0
773,602 + IAI47_03700 0.88 -0.0
773,603 - IAI47_03700 0.88 -2.0
773,603 - IAI47_03700 0.88 +3.0
773,603 - IAI47_03700 0.88 +0.3
773,603 - IAI47_03700 0.88 +0.8
773,603 - IAI47_03700 0.88 +0.0
773,626 + -1.3
773,626 + +0.0
773,626 + +2.0
773,627 - -3.9
773,677 + +1.3
773,677 + +1.6
773,677 + -0.9
773,677 + -0.6
773,677 + -0.4
773,677 + +0.0
773,677 + +0.5
773,678 - -3.0
773,678 - +1.9
773,678 - +0.9
773,678 - -1.0
773,678 - -3.3
773,678 - -0.4
773,678 - -1.4
773,678 - -0.9
773,678 - -0.2
773,705 + +0.6
773,783 + +2.7
773,783 + +0.1
773,784 - +0.5
773,794 + +0.2
773,794 + -0.6
773,794 + +1.5
773,795 - -0.4
773,795 - -2.4
773,795 - -1.4
773,795 - -0.7
773,795 - +2.7
773,795 - -3.0
773,796 + +0.0
773,796 + +1.8
773,797 - -1.5
773,797 - -3.7
773,797 - +0.3
773,827 - +3.8
773,837 + +0.6
773,837 + +3.9
773,837 + +0.3
773,838 - +4.1
773,846 - -2.4
773,846 - -1.4
773,935 + IAI47_03705 0.16 -0.7
773,935 + IAI47_03705 0.16 +0.8
773,935 + IAI47_03705 0.16 -0.4
773,935 + IAI47_03705 0.16 +1.6
773,936 - IAI47_03705 0.17 +2.7
773,936 - IAI47_03705 0.17 -1.0
773,936 - IAI47_03705 0.17 -2.5
773,974 - IAI47_03705 0.23 -1.4
773,984 + IAI47_03705 0.24 +0.1
773,984 + IAI47_03705 0.24 -2.9
773,984 + IAI47_03705 0.24 -2.4
773,985 - IAI47_03705 0.24 -0.7
773,985 - IAI47_03705 0.24 +0.7
773,985 - IAI47_03705 0.24 -0.9
773,985 - IAI47_03705 0.24 -0.3
774,017 + IAI47_03705 0.29 +1.6
774,017 + IAI47_03705 0.29 +0.0
774,017 + IAI47_03705 0.29 +0.1
774,017 + IAI47_03705 0.29 +0.0
774,018 - IAI47_03705 0.30 +1.6
774,062 + IAI47_03705 0.37 -1.5
774,079 + IAI47_03705 0.39 -0.8
774,079 + IAI47_03705 0.39 +0.6
774,080 - IAI47_03705 0.40 +0.0
774,080 - IAI47_03705 0.40 -2.0
774,080 - IAI47_03705 0.40 +1.2
774,165 + IAI47_03705 0.53 -1.0
774,208 + IAI47_03705 0.60 -1.8
774,384 + IAI47_03705 0.88 -0.6
774,385 - IAI47_03705 0.88 +1.6
774,385 - IAI47_03705 0.88 -1.4
774,404 + -3.9
774,415 - +1.1
774,415 - +3.3
774,441 + +0.5
774,441 + -1.8
774,442 - +0.9
774,442 - -0.9
774,442 - -3.1
774,460 + +0.7
774,460 + -0.7
774,460 + +2.6
774,460 + -0.8
774,461 - +0.5
774,461 - +2.4
774,479 + -1.7
774,480 - +0.1
774,510 + +1.6
774,510 + +1.9
774,510 + +1.8
774,511 - +1.4
774,511 - +1.8
774,535 + +2.4
774,575 + -1.0
774,575 + -1.8
774,576 - +1.8
774,576 - -1.3
774,576 - +0.0
774,659 + -2.3
774,660 - +1.7
774,747 + IAI47_03710 0.20 +1.0
774,747 + IAI47_03710 0.20 -3.2
774,747 + IAI47_03710 0.20 -3.5
774,747 + IAI47_03710 0.20 -1.4
774,748 - IAI47_03710 0.20 -0.4
774,748 - IAI47_03710 0.20 -2.1
774,801 + IAI47_03710 0.28 -1.5
774,802 - IAI47_03710 0.28 -0.2
774,818 - IAI47_03710 0.30 +0.1
774,859 - IAI47_03710 0.36 +0.2
774,859 - IAI47_03710 0.36 -3.0
774,892 + IAI47_03710 0.40 +1.0
774,892 + IAI47_03710 0.40 -3.8
774,898 + IAI47_03710 0.41 +1.6
774,899 - IAI47_03710 0.41 +0.7
774,899 - IAI47_03710 0.41 +2.0
774,912 + IAI47_03710 0.43 -1.8
774,912 + IAI47_03710 0.43 -0.4
774,912 + IAI47_03710 0.43 -0.9
774,920 + IAI47_03710 0.44 +1.1
774,950 + IAI47_03710 0.48 +0.3
774,950 + IAI47_03710 0.48 -2.7
774,950 + IAI47_03710 0.48 -1.7
775,029 + IAI47_03710 0.59 -2.8
775,030 - IAI47_03710 0.59 +2.0
775,030 - IAI47_03710 0.59 +0.9
775,041 - IAI47_03710 0.61 -2.2
775,041 - IAI47_03710 0.61 +0.5
775,041 - IAI47_03710 0.61 +2.6
775,064 - IAI47_03710 0.64 -1.4
775,064 - IAI47_03710 0.64 +1.6
775,064 - IAI47_03710 0.64 +2.6
775,065 + IAI47_03710 0.64 -2.2
775,065 + IAI47_03710 0.64 -1.2
775,066 - IAI47_03710 0.64 +1.2
775,066 - IAI47_03710 0.64 +0.5
775,066 - IAI47_03710 0.64 -2.8
775,092 + IAI47_03710 0.68 -3.1
775,134 + IAI47_03710 0.73 +1.2
775,156 + IAI47_03710 0.76 -1.4
775,157 - IAI47_03710 0.77 +1.2
775,157 - IAI47_03710 0.77 -1.3
775,157 - IAI47_03710 0.77 -3.0
775,183 + IAI47_03710 0.80 -2.9
775,183 + IAI47_03710 0.80 +0.6
775,183 + IAI47_03710 0.80 -4.1
775,184 - IAI47_03710 0.80 -1.5
775,210 + IAI47_03710 0.84 -0.3
775,210 + IAI47_03710 0.84 +0.0
775,210 + IAI47_03710 0.84 -2.6
775,210 + IAI47_03710 0.84 -1.9
775,210 + IAI47_03710 0.84 +0.9
775,210 + IAI47_03710 0.84 -3.9
775,210 + IAI47_03710 0.84 +0.6
775,211 - IAI47_03710 0.84 -2.3
775,233 + IAI47_03710 0.87 +2.0
775,233 + IAI47_03710 0.87 +0.3
775,233 + IAI47_03710 0.87 -1.4
775,234 - IAI47_03710 0.87 -1.7
775,234 - IAI47_03710 0.87 +0.2
775,234 - IAI47_03710 0.87 +2.8
775,234 - IAI47_03710 0.87 -3.8
775,252 + IAI47_03710 0.90 -2.2
775,252 + IAI47_03710 0.90 -0.7
775,252 + IAI47_03710 0.90 -1.7
775,252 + IAI47_03710 0.90 +2.1
775,252 + IAI47_03710 0.90 +0.3
775,252 + IAI47_03710 0.90 +0.6
775,253 - IAI47_03710 0.90 +0.9
775,253 - IAI47_03710 0.90 +0.0
775,253 - IAI47_03710 0.90 +1.6
775,253 - IAI47_03710 0.90 -3.2
775,253 - IAI47_03710 0.90 -2.3
775,253 - IAI47_03710 0.90 -0.9
775,253 - IAI47_03710 0.90 +1.5
775,253 - IAI47_03710 0.90 +0.2
775,253 - IAI47_03710 0.90 -2.6
775,292 + -0.8
775,292 + +0.0
775,292 + -0.4
775,292 + -1.8
775,292 + +1.1
775,292 + -2.1
775,293 - -0.3
775,293 - +0.1
775,293 - -2.3
775,293 - +1.9
775,293 - +3.5
775,293 - -3.7
775,305 + -0.2
775,305 + -3.6
775,305 + +1.0
775,306 - +0.6
775,306 - +1.6
775,324 + -2.7
775,324 + -2.4
775,460 + IAI47_03715 0.11 -2.6
775,460 + IAI47_03715 0.11 -1.7
775,460 + IAI47_03715 0.11 -1.7
775,460 + IAI47_03715 0.11 -3.4
775,460 + IAI47_03715 0.11 -2.5
775,461 - IAI47_03715 0.11 -3.6
775,461 - IAI47_03715 0.11 +1.7
775,461 - IAI47_03715 0.11 +0.0
775,461 - IAI47_03715 0.11 +0.2
775,478 + IAI47_03715 0.13 -2.4
775,478 + IAI47_03715 0.13 -0.7
775,478 + IAI47_03715 0.13 -1.0
775,478 + IAI47_03715 0.13 -2.3
775,478 + IAI47_03715 0.13 +0.2
775,479 - IAI47_03715 0.13 -3.2
775,479 - IAI47_03715 0.13 +0.6
775,479 - IAI47_03715 0.13 +2.0
775,479 - IAI47_03715 0.13 -1.4
775,479 - IAI47_03715 0.13 -1.7
775,479 - IAI47_03715 0.13 +0.3
775,479 - IAI47_03715 0.13 +2.6
775,501 + IAI47_03715 0.16 +1.5
775,502 - IAI47_03715 0.16 -0.1
775,548 + IAI47_03715 0.21 +1.5
775,548 + IAI47_03715 0.21 -2.4
775,548 + IAI47_03715 0.21 -2.5
775,549 - IAI47_03715 0.21 -0.4
775,549 - IAI47_03715 0.21 +0.3
775,665 + IAI47_03715 0.34 +0.0
775,665 + IAI47_03715 0.34 -0.4
775,665 + IAI47_03715 0.34 -2.3
775,665 + IAI47_03715 0.34 -0.2
775,665 + IAI47_03715 0.34 -1.8
775,665 + IAI47_03715 0.34 +0.2
775,665 + IAI47_03715 0.34 -3.5
775,666 - IAI47_03715 0.34 +4.1
775,666 - IAI47_03715 0.34 +1.2
775,666 - IAI47_03715 0.34 -1.8
775,666 - IAI47_03715 0.34 -0.1
775,666 - IAI47_03715 0.34 -1.4
775,666 - IAI47_03715 0.34 -3.1
775,666 - IAI47_03715 0.34 -1.8
775,827 + IAI47_03715 0.52 +1.6
775,827 + IAI47_03715 0.52 +0.0
775,827 + IAI47_03715 0.52 -1.2
775,828 - IAI47_03715 0.52 -3.1
776,066 - IAI47_03715 0.78 -1.9
776,066 - IAI47_03715 0.78 +0.0
776,175 + +1.4
776,175 + +0.6
776,176 - -1.0
776,176 - +0.4
776,176 - +4.6
776,264 - -2.7
776,264 - -2.0
776,264 - -1.4
776,266 + -0.4
776,266 + -0.7
776,267 - +0.2
776,267 - -2.8
776,267 - -2.6
776,295 + -1.7
776,295 + +1.8
776,295 + -3.2
776,295 + +1.3
776,295 + -0.7
776,296 - +1.6
776,296 - -2.3
776,311 + -0.4
776,311 + +0.2
776,312 - +1.6
776,312 - -1.2

Or see this region's nucleotide sequence