Strain Fitness in Pantoea sp. MT58 around IAI47_03045

Experiment: Ammonium chloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_03035 and IAI47_03040 are separated by 138 nucleotidesIAI47_03040 and IAI47_03045 overlap by 4 nucleotidesIAI47_03045 and IAI47_03050 are separated by 74 nucleotides IAI47_03035: IAI47_03035 - SDR family oxidoreductase, at 627,089 to 627,880 _03035 IAI47_03040: IAI47_03040 - TetR/AcrR family transcriptional regulator, at 628,019 to 628,603 _03040 IAI47_03045: IAI47_03045 - G/U mismatch-specific DNA glycosylase, at 628,600 to 629,118 _03045 IAI47_03050: IAI47_03050 - RNA polymerase sigma factor RpoD, at 629,193 to 631,034 _03050 Position (kb) 628 629 630Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 627.634 kb on + strand, within IAI47_03035at 627.646 kb on + strand, within IAI47_03035at 627.646 kb on + strand, within IAI47_03035at 627.646 kb on + strand, within IAI47_03035at 627.647 kb on - strand, within IAI47_03035at 627.692 kb on + strand, within IAI47_03035at 627.692 kb on + strand, within IAI47_03035at 627.692 kb on + strand, within IAI47_03035at 627.692 kb on + strand, within IAI47_03035at 627.693 kb on - strand, within IAI47_03035at 627.693 kb on - strand, within IAI47_03035at 627.693 kb on - strand, within IAI47_03035at 627.795 kb on + strand, within IAI47_03035at 627.796 kb on - strand, within IAI47_03035at 627.796 kb on - strand, within IAI47_03035at 627.796 kb on - strand, within IAI47_03035at 627.822 kb on + strandat 627.822 kb on + strandat 627.822 kb on + strandat 627.822 kb on + strandat 627.823 kb on - strandat 627.823 kb on - strandat 627.823 kb on - strandat 627.857 kb on + strandat 627.857 kb on + strandat 627.857 kb on + strandat 627.858 kb on - strandat 627.858 kb on - strandat 627.858 kb on - strandat 627.955 kb on + strandat 627.969 kb on + strandat 627.969 kb on + strandat 627.969 kb on + strandat 627.970 kb on - strandat 627.970 kb on - strandat 627.973 kb on + strandat 627.974 kb on - strandat 627.976 kb on + strandat 627.976 kb on + strandat 627.976 kb on + strandat 627.976 kb on + strandat 627.976 kb on + strandat 627.976 kb on + strandat 627.976 kb on + strandat 627.977 kb on - strandat 627.977 kb on - strandat 627.977 kb on - strandat 627.978 kb on + strandat 627.978 kb on + strandat 627.978 kb on + strandat 627.978 kb on + strandat 627.978 kb on + strandat 627.979 kb on - strandat 627.979 kb on - strandat 627.979 kb on - strandat 627.979 kb on - strandat 627.979 kb on - strandat 627.979 kb on - strandat 627.981 kb on + strandat 627.981 kb on + strandat 627.981 kb on + strandat 627.982 kb on - strandat 627.982 kb on - strandat 627.982 kb on - strandat 628.000 kb on + strandat 628.001 kb on - strandat 628.001 kb on - strandat 628.057 kb on + strandat 628.057 kb on + strandat 628.057 kb on + strandat 628.058 kb on - strandat 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.157 kb on + strand, within IAI47_03040at 628.158 kb on - strand, within IAI47_03040at 628.158 kb on - strand, within IAI47_03040at 628.158 kb on - strand, within IAI47_03040at 628.158 kb on - strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.207 kb on + strand, within IAI47_03040at 628.208 kb on - strand, within IAI47_03040at 628.208 kb on - strand, within IAI47_03040at 628.208 kb on - strand, within IAI47_03040at 628.226 kb on - strand, within IAI47_03040at 628.240 kb on + strand, within IAI47_03040at 628.240 kb on + strand, within IAI47_03040at 628.241 kb on - strand, within IAI47_03040at 628.241 kb on - strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.285 kb on + strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.286 kb on - strand, within IAI47_03040at 628.289 kb on + strand, within IAI47_03040at 628.289 kb on + strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.290 kb on - strand, within IAI47_03040at 628.405 kb on + strand, within IAI47_03040at 628.405 kb on + strand, within IAI47_03040at 628.406 kb on - strand, within IAI47_03040at 628.406 kb on - strand, within IAI47_03040at 628.406 kb on - strand, within IAI47_03040at 628.431 kb on + strand, within IAI47_03040at 628.431 kb on + strand, within IAI47_03040at 628.432 kb on - strand, within IAI47_03040at 628.432 kb on - strand, within IAI47_03040at 628.432 kb on - strand, within IAI47_03040at 628.573 kb on + strandat 628.573 kb on + strandat 628.574 kb on - strandat 628.574 kb on - strandat 628.582 kb on + strandat 628.582 kb on + strandat 628.583 kb on - strandat 628.583 kb on - strandat 628.615 kb on - strandat 628.626 kb on + strandat 628.626 kb on + strandat 628.627 kb on - strandat 628.695 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.731 kb on + strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.732 kb on - strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.820 kb on + strand, within IAI47_03045at 628.821 kb on - strand, within IAI47_03045at 628.821 kb on - strand, within IAI47_03045at 628.821 kb on - strand, within IAI47_03045at 628.906 kb on + strand, within IAI47_03045at 628.907 kb on - strand, within IAI47_03045at 628.907 kb on - strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.994 kb on + strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.995 kb on - strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.998 kb on + strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 628.999 kb on - strand, within IAI47_03045at 629.077 kb on + strandat 629.077 kb on + strandat 629.077 kb on + strandat 629.194 kb on + strandat 629.194 kb on + strandat 629.195 kb on - strandat 629.195 kb on - strandat 629.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ammonium chloride (N)
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627,634 + IAI47_03035 0.69 -1.9
627,646 + IAI47_03035 0.70 -2.2
627,646 + IAI47_03035 0.70 -0.7
627,646 + IAI47_03035 0.70 +1.7
627,647 - IAI47_03035 0.70 -0.3
627,692 + IAI47_03035 0.76 +0.7
627,692 + IAI47_03035 0.76 +1.7
627,692 + IAI47_03035 0.76 +1.9
627,692 + IAI47_03035 0.76 -3.1
627,693 - IAI47_03035 0.76 +1.6
627,693 - IAI47_03035 0.76 -0.2
627,693 - IAI47_03035 0.76 +0.1
627,795 + IAI47_03035 0.89 +1.0
627,796 - IAI47_03035 0.89 +0.3
627,796 - IAI47_03035 0.89 -0.7
627,796 - IAI47_03035 0.89 -2.9
627,822 + +0.9
627,822 + -1.2
627,822 + +0.9
627,822 + +2.0
627,823 - +1.6
627,823 - -1.6
627,823 - -1.0
627,857 + -0.4
627,857 + -0.7
627,857 + +0.7
627,858 - +0.7
627,858 - -0.2
627,858 - +1.6
627,955 + -3.5
627,969 + -2.9
627,969 + +1.3
627,969 + +0.2
627,970 - +0.4
627,970 - -3.8
627,973 + -1.7
627,974 - -0.6
627,976 + -2.6
627,976 + +0.4
627,976 + -0.9
627,976 + -1.7
627,976 + +0.7
627,976 + -3.2
627,976 + -0.8
627,977 - -3.3
627,977 - +0.2
627,977 - -3.0
627,978 + -0.4
627,978 + +2.4
627,978 + +0.9
627,978 + -0.9
627,978 + -0.7
627,979 - +0.3
627,979 - -0.1
627,979 - +0.4
627,979 - -1.6
627,979 - -1.7
627,979 - -2.7
627,981 + -0.6
627,981 + -0.4
627,981 + +0.7
627,982 - +0.9
627,982 - -1.3
627,982 - +1.0
628,000 + +0.5
628,001 - -0.4
628,001 - -2.2
628,057 + +0.6
628,057 + -0.7
628,057 + +1.6
628,058 - +1.6
628,157 + IAI47_03040 0.24 +0.9
628,157 + IAI47_03040 0.24 -0.2
628,157 + IAI47_03040 0.24 +0.0
628,157 + IAI47_03040 0.24 +0.8
628,157 + IAI47_03040 0.24 -0.4
628,157 + IAI47_03040 0.24 -2.8
628,157 + IAI47_03040 0.24 +2.6
628,157 + IAI47_03040 0.24 -0.4
628,158 - IAI47_03040 0.24 -0.7
628,158 - IAI47_03040 0.24 +0.2
628,158 - IAI47_03040 0.24 -2.1
628,158 - IAI47_03040 0.24 -1.0
628,207 + IAI47_03040 0.32 +2.6
628,207 + IAI47_03040 0.32 -3.5
628,207 + IAI47_03040 0.32 -2.6
628,207 + IAI47_03040 0.32 +2.6
628,207 + IAI47_03040 0.32 -2.1
628,207 + IAI47_03040 0.32 +0.4
628,207 + IAI47_03040 0.32 +0.0
628,208 - IAI47_03040 0.32 +0.1
628,208 - IAI47_03040 0.32 -3.0
628,208 - IAI47_03040 0.32 -3.3
628,226 - IAI47_03040 0.35 +1.9
628,240 + IAI47_03040 0.38 +0.5
628,240 + IAI47_03040 0.38 +1.6
628,241 - IAI47_03040 0.38 -0.7
628,241 - IAI47_03040 0.38 +0.0
628,285 + IAI47_03040 0.45 -1.0
628,285 + IAI47_03040 0.45 +1.1
628,285 + IAI47_03040 0.45 -2.8
628,285 + IAI47_03040 0.45 -1.0
628,285 + IAI47_03040 0.45 -2.8
628,285 + IAI47_03040 0.45 +1.3
628,286 - IAI47_03040 0.46 -3.2
628,286 - IAI47_03040 0.46 -0.2
628,286 - IAI47_03040 0.46 -2.0
628,286 - IAI47_03040 0.46 -1.6
628,289 + IAI47_03040 0.46 -1.6
628,289 + IAI47_03040 0.46 +1.6
628,290 - IAI47_03040 0.46 -0.2
628,290 - IAI47_03040 0.46 +0.0
628,290 - IAI47_03040 0.46 +0.6
628,290 - IAI47_03040 0.46 -0.7
628,290 - IAI47_03040 0.46 -0.7
628,290 - IAI47_03040 0.46 -1.4
628,290 - IAI47_03040 0.46 +0.6
628,290 - IAI47_03040 0.46 +0.6
628,405 + IAI47_03040 0.66 -2.1
628,405 + IAI47_03040 0.66 -1.9
628,406 - IAI47_03040 0.66 -1.7
628,406 - IAI47_03040 0.66 +0.1
628,406 - IAI47_03040 0.66 +1.1
628,431 + IAI47_03040 0.70 +0.0
628,431 + IAI47_03040 0.70 +0.5
628,432 - IAI47_03040 0.71 -3.2
628,432 - IAI47_03040 0.71 -1.6
628,432 - IAI47_03040 0.71 -0.3
628,573 + +1.6
628,573 + -0.7
628,574 - +3.1
628,574 - +1.5
628,582 + +0.6
628,582 + -1.1
628,583 - -1.2
628,583 - -2.1
628,615 - +0.1
628,626 + +1.9
628,626 + -0.2
628,627 - -2.3
628,695 + IAI47_03045 0.18 +1.1
628,731 + IAI47_03045 0.25 +1.8
628,731 + IAI47_03045 0.25 -2.5
628,731 + IAI47_03045 0.25 -0.8
628,731 + IAI47_03045 0.25 +0.6
628,732 - IAI47_03045 0.25 -1.4
628,732 - IAI47_03045 0.25 -1.7
628,732 - IAI47_03045 0.25 +5.3
628,732 - IAI47_03045 0.25 +1.8
628,820 + IAI47_03045 0.42 -1.4
628,820 + IAI47_03045 0.42 -2.0
628,820 + IAI47_03045 0.42 -0.7
628,820 + IAI47_03045 0.42 -2.3
628,821 - IAI47_03045 0.43 -1.0
628,821 - IAI47_03045 0.43 +0.4
628,821 - IAI47_03045 0.43 +0.6
628,906 + IAI47_03045 0.59 -2.0
628,907 - IAI47_03045 0.59 +0.9
628,907 - IAI47_03045 0.59 +0.9
628,994 + IAI47_03045 0.76 -0.4
628,994 + IAI47_03045 0.76 -2.7
628,994 + IAI47_03045 0.76 +0.2
628,994 + IAI47_03045 0.76 +3.3
628,994 + IAI47_03045 0.76 +0.8
628,994 + IAI47_03045 0.76 -2.4
628,995 - IAI47_03045 0.76 -3.1
628,995 - IAI47_03045 0.76 -2.8
628,995 - IAI47_03045 0.76 -0.9
628,995 - IAI47_03045 0.76 +2.8
628,995 - IAI47_03045 0.76 -1.7
628,998 + IAI47_03045 0.77 +1.7
628,998 + IAI47_03045 0.77 +0.3
628,998 + IAI47_03045 0.77 +1.7
628,998 + IAI47_03045 0.77 -4.0
628,998 + IAI47_03045 0.77 -2.4
628,998 + IAI47_03045 0.77 -1.4
628,998 + IAI47_03045 0.77 +0.2
628,999 - IAI47_03045 0.77 -0.6
628,999 - IAI47_03045 0.77 -1.4
628,999 - IAI47_03045 0.77 -0.7
628,999 - IAI47_03045 0.77 -0.0
628,999 - IAI47_03045 0.77 -0.4
628,999 - IAI47_03045 0.77 -1.4
628,999 - IAI47_03045 0.77 -3.0
628,999 - IAI47_03045 0.77 -0.9
628,999 - IAI47_03045 0.77 +0.0
628,999 - IAI47_03045 0.77 -1.0
628,999 - IAI47_03045 0.77 -2.5
629,077 + -0.4
629,077 + +0.0
629,077 + +1.6
629,194 + +1.9
629,194 + -2.0
629,195 - +0.6
629,195 - -0.4
629,195 - -0.4

Or see this region's nucleotide sequence