Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02420

Experiment: McCas_H2_complete Fluorophosphate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02420 and MMP_RS02425 are separated by 119 nucleotidesMMP_RS02425 and MMP_RS02430 are separated by 168 nucleotides MMP_RS02420: MMP_RS02420 - DEAD/DEAH box helicase, at 450,214 to 451,830 _RS02420 MMP_RS02425: MMP_RS02425 - hypothetical protein, at 451,950 to 452,144 _RS02425 MMP_RS02430: MMP_RS02430 - hypothetical protein, at 452,313 to 453,959 _RS02430 Position (kb) 450 451 452Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 449.565 kb on - strandat 449.581 kb on + strandat 449.591 kb on - strandat 449.596 kb on + strandat 449.615 kb on - strandat 449.664 kb on - strandat 449.664 kb on - strandat 449.664 kb on - strandat 449.665 kb on + strandat 449.665 kb on + strandat 449.666 kb on - strandat 449.666 kb on - strandat 449.668 kb on - strandat 449.668 kb on - strandat 449.669 kb on + strandat 449.700 kb on + strandat 449.704 kb on + strandat 449.707 kb on - strandat 449.707 kb on - strandat 449.722 kb on - strandat 449.793 kb on + strandat 449.811 kb on + strandat 449.814 kb on - strandat 449.824 kb on - strandat 449.824 kb on - strandat 449.873 kb on - strandat 449.873 kb on - strandat 449.878 kb on + strandat 449.932 kb on + strandat 449.932 kb on + strandat 449.938 kb on - strandat 449.938 kb on - strandat 449.939 kb on + strandat 449.939 kb on + strandat 449.940 kb on - strandat 449.940 kb on - strandat 449.941 kb on + strandat 449.941 kb on + strandat 449.941 kb on + strandat 449.967 kb on - strandat 449.976 kb on + strandat 449.976 kb on + strandat 449.980 kb on - strandat 449.981 kb on + strandat 449.983 kb on - strandat 450.011 kb on + strandat 450.034 kb on + strandat 450.120 kb on + strandat 450.211 kb on + strandat 450.211 kb on + strandat 450.321 kb on + strandat 450.339 kb on - strandat 450.444 kb on + strandat 450.468 kb on + strandat 450.528 kb on + strandat 450.529 kb on - strandat 450.530 kb on + strandat 450.567 kb on + strandat 450.656 kb on + strandat 450.656 kb on + strandat 450.656 kb on + strandat 450.659 kb on - strandat 450.666 kb on + strandat 450.666 kb on + strandat 450.852 kb on - strandat 450.852 kb on - strandat 450.905 kb on - strandat 451.154 kb on - strandat 451.239 kb on - strandat 451.240 kb on + strandat 451.276 kb on - strandat 451.335 kb on - strandat 451.336 kb on + strandat 451.338 kb on + strandat 451.496 kb on - strandat 451.602 kb on + strandat 451.614 kb on + strandat 451.707 kb on + strandat 451.832 kb on - strandat 451.958 kb on - strandat 451.988 kb on - strand, within MMP_RS02425at 452.045 kb on - strand, within MMP_RS02425at 452.049 kb on + strand, within MMP_RS02425at 452.066 kb on - strand, within MMP_RS02425at 452.082 kb on - strand, within MMP_RS02425at 452.090 kb on - strand, within MMP_RS02425at 452.107 kb on + strand, within MMP_RS02425at 452.139 kb on - strandat 452.161 kb on - strandat 452.162 kb on + strandat 452.162 kb on + strandat 452.172 kb on - strandat 452.184 kb on - strandat 452.184 kb on - strandat 452.268 kb on + strandat 452.281 kb on - strandat 452.282 kb on + strandat 452.322 kb on - strandat 452.322 kb on - strandat 452.372 kb on - strandat 452.401 kb on - strandat 452.469 kb on + strandat 452.469 kb on + strandat 452.469 kb on + strandat 452.477 kb on - strandat 452.478 kb on + strand, within MMP_RS02430at 452.481 kb on - strand, within MMP_RS02430at 452.515 kb on - strand, within MMP_RS02430at 452.558 kb on - strand, within MMP_RS02430at 452.560 kb on - strand, within MMP_RS02430at 452.601 kb on + strand, within MMP_RS02430at 452.760 kb on + strand, within MMP_RS02430at 452.791 kb on - strand, within MMP_RS02430at 452.792 kb on + strand, within MMP_RS02430

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Fluorophosphate 62.5 mM
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449,565 - +0.6
449,581 + -0.3
449,591 - -0.7
449,596 + +0.5
449,615 - -0.4
449,664 - -1.1
449,664 - +0.6
449,664 - +1.0
449,665 + -0.8
449,665 + +0.2
449,666 - -0.1
449,666 - -0.8
449,668 - +0.5
449,668 - -0.6
449,669 + +0.7
449,700 + -0.6
449,704 + -2.5
449,707 - -0.5
449,707 - +2.7
449,722 - -0.6
449,793 + +0.0
449,811 + +2.6
449,814 - -0.2
449,824 - +0.9
449,824 - +0.1
449,873 - +1.6
449,873 - -1.1
449,878 + -0.7
449,932 + +2.8
449,932 + +0.8
449,938 - +0.6
449,938 - -0.5
449,939 + -0.3
449,939 + -0.0
449,940 - -0.5
449,940 - -0.9
449,941 + +0.5
449,941 + -0.7
449,941 + +0.3
449,967 - -1.8
449,976 + +1.2
449,976 + -1.4
449,980 - +1.7
449,981 + -1.9
449,983 - -3.5
450,011 + -3.7
450,034 + -0.4
450,120 + +0.5
450,211 + +3.3
450,211 + +0.7
450,321 + -0.1
450,339 - -1.2
450,444 + -0.7
450,468 + -0.2
450,528 + -0.1
450,529 - -1.8
450,530 + -0.9
450,567 + +0.8
450,656 + -0.7
450,656 + -0.6
450,656 + +2.8
450,659 - -0.9
450,666 + -0.6
450,666 + -1.6
450,852 - -0.9
450,852 - -0.4
450,905 - -1.9
451,154 - -4.2
451,239 - -1.0
451,240 + -3.0
451,276 - -1.5
451,335 - +3.2
451,336 + +2.2
451,338 + +3.1
451,496 - +1.5
451,602 + +1.0
451,614 + +3.2
451,707 + -0.4
451,832 - +1.3
451,958 - +0.6
451,988 - MMP_RS02425 0.19 +0.5
452,045 - MMP_RS02425 0.49 +2.1
452,049 + MMP_RS02425 0.51 +1.0
452,066 - MMP_RS02425 0.59 +2.1
452,082 - MMP_RS02425 0.68 +1.7
452,090 - MMP_RS02425 0.72 -0.2
452,107 + MMP_RS02425 0.81 -0.5
452,139 - -0.4
452,161 - +0.5
452,162 + -0.3
452,162 + +0.7
452,172 - -0.6
452,184 - -0.1
452,184 - -0.7
452,268 + -1.0
452,281 - +0.8
452,282 + -0.8
452,322 - +0.0
452,322 - +0.5
452,372 - -0.3
452,401 - +1.3
452,469 + +0.9
452,469 + +2.5
452,469 + -0.5
452,477 - -2.3
452,478 + MMP_RS02430 0.10 -0.3
452,481 - MMP_RS02430 0.10 +1.4
452,515 - MMP_RS02430 0.12 -0.8
452,558 - MMP_RS02430 0.15 +0.3
452,560 - MMP_RS02430 0.15 +0.8
452,601 + MMP_RS02430 0.17 -1.2
452,760 + MMP_RS02430 0.27 +1.1
452,791 - MMP_RS02430 0.29 -0.6
452,792 + MMP_RS02430 0.29 +0.5

Or see this region's nucleotide sequence