Experiment: McCas_H2_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02405 and MMP_RS02410 are separated by 115 nucleotides MMP_RS02410 and MMP_RS02415 are separated by 103 nucleotides
MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587
_RS02405
MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449
_RS02410
MMP_RS02415: MMP_RS02415 - site-specific integrase, at 448,553 to 449,101
_RS02415
Position (kb) 448
449
450 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 447.601 kb on - strand at 447.601 kb on - strand at 447.642 kb on + strand at 447.738 kb on + strand at 447.837 kb on - strand, within MMP_RS02410 at 448.088 kb on + strand, within MMP_RS02410 at 448.362 kb on - strand, within MMP_RS02410 at 448.392 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.947 kb on + strand, within MMP_RS02415 at 448.968 kb on + strand, within MMP_RS02415 at 449.565 kb on - strand at 449.581 kb on + strand at 449.591 kb on - strand at 449.596 kb on + strand at 449.615 kb on - strand at 449.664 kb on - strand at 449.664 kb on - strand at 449.664 kb on - strand at 449.665 kb on + strand at 449.665 kb on + strand at 449.666 kb on - strand at 449.666 kb on - strand at 449.668 kb on - strand at 449.668 kb on - strand at 449.669 kb on + strand at 449.700 kb on + strand at 449.704 kb on + strand at 449.707 kb on - strand at 449.707 kb on - strand at 449.722 kb on - strand at 449.793 kb on + strand at 449.811 kb on + strand at 449.814 kb on - strand at 449.824 kb on - strand at 449.824 kb on - strand at 449.873 kb on - strand at 449.873 kb on - strand at 449.878 kb on + strand at 449.932 kb on + strand at 449.932 kb on + strand at 449.938 kb on - strand at 449.938 kb on - strand at 449.939 kb on + strand at 449.939 kb on + strand at 449.940 kb on - strand at 449.940 kb on - strand at 449.941 kb on + strand at 449.941 kb on + strand at 449.941 kb on + strand at 449.967 kb on - strand at 449.976 kb on + strand at 449.976 kb on + strand at 449.980 kb on - strand at 449.981 kb on + strand at 449.983 kb on - strand at 450.011 kb on + strand at 450.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Chloride 250 mM remove 447,601 - +0.6 447,601 - +0.6 447,642 + +1.0 447,738 + +1.1 447,837 - MMP_RS02410 0.18 +0.2 448,088 + MMP_RS02410 0.52 -0.4 448,362 - MMP_RS02410 0.88 +0.7 448,392 - +1.8 448,483 - +1.6 448,483 - -1.2 448,483 - -0.2 448,947 + MMP_RS02415 0.72 -3.4 448,968 + MMP_RS02415 0.76 +1.0 449,565 - -0.9 449,581 + -4.1 449,591 - -6.0 449,596 + -4.1 449,615 - +0.1 449,664 - -0.2 449,664 - -0.2 449,664 - +0.1 449,665 + -0.6 449,665 + -0.1 449,666 - +1.4 449,666 - +1.1 449,668 - +0.5 449,668 - -0.6 449,669 + +1.2 449,700 + +0.8 449,704 + +1.1 449,707 - +1.4 449,707 - -1.4 449,722 - +1.1 449,793 + +1.3 449,811 + +0.5 449,814 - +0.0 449,824 - -1.4 449,824 - -0.2 449,873 - -0.0 449,873 - +1.0 449,878 + +1.6 449,932 + +1.9 449,932 + +1.2 449,938 - -0.1 449,938 - -0.3 449,939 + -2.2 449,939 + +0.7 449,940 - +0.0 449,940 - -0.3 449,941 + -4.3 449,941 + +0.1 449,941 + -4.9 449,967 - +1.0 449,976 + -4.4 449,976 + -2.6 449,980 - -0.9 449,981 + -2.6 449,983 - +1.5 450,011 + -3.3 450,034 + -1.2
Or see this region's nucleotide sequence