Experiment: McCas_H2_complete Chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00875 and MMP_RS00880 are separated by 236 nucleotides MMP_RS00880 and MMP_RS00885 are separated by 229 nucleotides MMP_RS00885 and MMP_RS00890 are separated by 25 nucleotides
MMP_RS00875: MMP_RS00875 - methanogenesis marker 3 protein, at 165,135 to 166,640
_RS00875
MMP_RS00880: MMP_RS00880 - ribosome assembly RNA-binding protein YhbY, at 166,877 to 167,260
_RS00880
MMP_RS00885: MMP_RS00885 - 30S ribosomal protein S19e, at 167,490 to 167,915
_RS00885
MMP_RS00890: MMP_RS00890 - DNA-binding protein, at 167,941 to 168,300
_RS00890
Position (kb) 166
167
168 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 166.334 kb on - strand at 166.371 kb on - strand at 166.570 kb on - strand at 166.585 kb on + strand at 166.664 kb on + strand at 166.667 kb on - strand at 166.668 kb on + strand at 166.703 kb on - strand at 166.704 kb on + strand at 166.704 kb on + strand at 166.705 kb on - strand at 166.710 kb on + strand at 166.712 kb on + strand at 166.725 kb on - strand at 166.725 kb on - strand at 166.726 kb on + strand at 166.728 kb on - strand at 166.728 kb on - strand at 166.729 kb on + strand at 166.737 kb on + strand at 166.743 kb on + strand at 166.747 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.749 kb on - strand at 166.750 kb on + strand at 166.751 kb on - strand at 166.752 kb on + strand at 166.752 kb on + strand at 166.752 kb on + strand at 166.752 kb on + strand at 166.753 kb on - strand at 166.753 kb on - strand at 166.753 kb on - strand at 166.754 kb on + strand at 166.754 kb on + strand at 166.758 kb on - strand at 166.759 kb on + strand at 166.819 kb on + strand at 166.850 kb on - strand at 166.856 kb on - strand at 166.856 kb on - strand at 166.856 kb on - strand at 166.857 kb on + strand at 166.857 kb on + strand at 166.857 kb on + strand at 166.857 kb on + strand at 166.897 kb on + strand at 166.923 kb on - strand, within MMP_RS00880 at 166.956 kb on - strand, within MMP_RS00880 at 167.029 kb on - strand, within MMP_RS00880 at 167.032 kb on + strand, within MMP_RS00880 at 167.207 kb on - strand, within MMP_RS00880 at 167.262 kb on + strand at 167.906 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Chloride 250 mM remove 166,334 - +0.2 166,371 - -3.3 166,570 - -3.4 166,585 + +1.7 166,664 + -5.0 166,667 - +0.0 166,668 + -0.1 166,703 - -0.6 166,704 + -3.4 166,704 + -4.1 166,705 - -4.7 166,710 + -2.9 166,712 + -3.2 166,725 - -1.2 166,725 - -0.3 166,726 + -1.5 166,728 - -0.2 166,728 - +0.3 166,729 + -5.0 166,737 + -1.4 166,743 + -0.7 166,747 - -4.9 166,749 - -2.3 166,749 - -2.4 166,749 - -2.3 166,749 - +2.2 166,749 - -4.6 166,750 + +1.2 166,751 - -4.1 166,752 + +0.3 166,752 + -1.2 166,752 + -0.4 166,752 + +0.0 166,753 - -0.6 166,753 - -2.4 166,753 - -0.0 166,754 + -0.5 166,754 + -1.5 166,758 - -0.9 166,759 + -4.6 166,819 + +0.4 166,850 - +0.0 166,856 - +0.9 166,856 - +1.3 166,856 - +0.1 166,857 + -1.2 166,857 + -5.5 166,857 + +0.1 166,857 + -3.0 166,897 + -0.5 166,923 - MMP_RS00880 0.12 -5.2 166,956 - MMP_RS00880 0.21 -0.2 167,029 - MMP_RS00880 0.40 -1.6 167,032 + MMP_RS00880 0.40 -0.5 167,207 - MMP_RS00880 0.86 -1.3 167,262 + +3.4 167,906 + -4.9
Or see this region's nucleotide sequence