Experiment: McCas_H2_complete Spiramycin 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03795 and MMP_RS03800 are separated by 352 nucleotides MMP_RS03800 and MMP_RS03805 are separated by 35 nucleotides MMP_RS03805 and MMP_RS03810 overlap by 4 nucleotides
MMP_RS03795: MMP_RS03795 - YqhA family protein, at 716,325 to 716,882
_RS03795
MMP_RS03800: MMP_RS03800 - hypothetical protein, at 717,235 to 717,468
_RS03800
MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444
_RS03805
MMP_RS03810: MMP_RS03810 - excinuclease ABC subunit UvrC, at 719,441 to 721,024
_RS03810
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 716.615 kb on + strand, within MMP_RS03795 at 716.686 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.693 kb on - strand, within MMP_RS03795 at 716.694 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.700 kb on + strand, within MMP_RS03795 at 716.706 kb on - strand, within MMP_RS03795 at 716.707 kb on + strand, within MMP_RS03795 at 716.773 kb on + strand, within MMP_RS03795 at 716.886 kb on - strand at 716.894 kb on - strand at 716.906 kb on - strand at 716.906 kb on - strand at 716.927 kb on - strand at 716.964 kb on - strand at 716.965 kb on + strand at 717.017 kb on + strand at 717.040 kb on - strand at 717.041 kb on + strand at 717.042 kb on - strand at 717.043 kb on + strand at 717.045 kb on + strand at 717.045 kb on + strand at 717.163 kb on - strand at 717.163 kb on - strand at 717.164 kb on + strand at 717.164 kb on + strand at 717.166 kb on - strand at 717.191 kb on + strand at 717.195 kb on - strand at 717.196 kb on + strand at 717.199 kb on - strand at 717.215 kb on - strand at 717.215 kb on - strand at 717.277 kb on + strand, within MMP_RS03800 at 717.277 kb on + strand, within MMP_RS03800 at 717.283 kb on - strand, within MMP_RS03800 at 717.435 kb on + strand, within MMP_RS03800 at 717.456 kb on - strand at 717.484 kb on + strand at 717.586 kb on - strand at 717.587 kb on + strand at 717.637 kb on + strand at 717.637 kb on + strand at 717.638 kb on - strand at 717.639 kb on + strand at 717.894 kb on - strand, within MMP_RS03805 at 718.014 kb on - strand, within MMP_RS03805 at 718.026 kb on - strand, within MMP_RS03805 at 718.061 kb on + strand, within MMP_RS03805 at 718.228 kb on + strand, within MMP_RS03805 at 718.297 kb on - strand, within MMP_RS03805 at 718.319 kb on - strand, within MMP_RS03805 at 718.388 kb on - strand, within MMP_RS03805 at 718.388 kb on - strand, within MMP_RS03805 at 718.399 kb on - strand, within MMP_RS03805 at 718.399 kb on - strand, within MMP_RS03805 at 718.399 kb on - strand, within MMP_RS03805 at 718.400 kb on + strand, within MMP_RS03805 at 718.473 kb on - strand, within MMP_RS03805 at 718.474 kb on + strand, within MMP_RS03805 at 718.561 kb on + strand, within MMP_RS03805 at 718.561 kb on + strand, within MMP_RS03805 at 718.577 kb on + strand, within MMP_RS03805 at 718.639 kb on + strand, within MMP_RS03805 at 718.659 kb on + strand, within MMP_RS03805 at 718.659 kb on + strand, within MMP_RS03805 at 718.709 kb on + strand, within MMP_RS03805 at 718.725 kb on - strand, within MMP_RS03805 at 718.773 kb on + strand, within MMP_RS03805 at 718.999 kb on - strand, within MMP_RS03805 at 719.025 kb on - strand, within MMP_RS03805 at 719.111 kb on - strand, within MMP_RS03805 at 719.111 kb on - strand, within MMP_RS03805 at 719.132 kb on - strand, within MMP_RS03805 at 719.134 kb on - strand, within MMP_RS03805 at 719.135 kb on + strand, within MMP_RS03805 at 719.153 kb on + strand, within MMP_RS03805 at 719.174 kb on + strand, within MMP_RS03805 at 719.174 kb on + strand, within MMP_RS03805 at 719.238 kb on + strand, within MMP_RS03805 at 719.250 kb on - strand, within MMP_RS03805 at 719.291 kb on - strand at 719.295 kb on + strand at 719.479 kb on + strand at 719.494 kb on - strand at 719.525 kb on - strand at 719.687 kb on - strand, within MMP_RS03810 at 719.857 kb on - strand, within MMP_RS03810 at 719.858 kb on + strand, within MMP_RS03810 at 719.897 kb on - strand, within MMP_RS03810 at 720.072 kb on + strand, within MMP_RS03810 at 720.136 kb on - strand, within MMP_RS03810 at 720.219 kb on - strand, within MMP_RS03810 at 720.246 kb on + strand, within MMP_RS03810 at 720.264 kb on + strand, within MMP_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Spiramycin 0.1 mM remove 716,615 + MMP_RS03795 0.52 +0.5 716,686 - MMP_RS03795 0.65 -0.1 716,693 - MMP_RS03795 0.66 +1.9 716,693 - MMP_RS03795 0.66 +2.6 716,694 + MMP_RS03795 0.66 +1.3 716,700 + MMP_RS03795 0.67 -1.8 716,700 + MMP_RS03795 0.67 +0.7 716,706 - MMP_RS03795 0.68 +0.3 716,707 + MMP_RS03795 0.68 -1.9 716,773 + MMP_RS03795 0.80 +0.1 716,886 - -1.0 716,894 - -0.1 716,906 - -0.4 716,906 - +1.2 716,927 - +0.3 716,964 - -0.2 716,965 + +0.5 717,017 + -2.4 717,040 - +0.0 717,041 + +1.0 717,042 - -1.8 717,043 + -0.8 717,045 + +1.7 717,045 + -0.3 717,163 - +1.3 717,163 - -0.5 717,164 + -0.1 717,164 + -0.4 717,166 - +0.0 717,191 + +0.2 717,195 - -0.7 717,196 + +1.4 717,199 - -0.3 717,215 - +1.4 717,215 - -0.8 717,277 + MMP_RS03800 0.18 +0.3 717,277 + MMP_RS03800 0.18 -0.1 717,283 - MMP_RS03800 0.21 +2.2 717,435 + MMP_RS03800 0.85 +0.1 717,456 - -0.6 717,484 + +0.8 717,586 - -0.9 717,587 + -0.6 717,637 + -0.0 717,637 + -1.4 717,638 - -0.7 717,639 + -0.1 717,894 - MMP_RS03805 0.20 -0.0 718,014 - MMP_RS03805 0.26 -0.2 718,026 - MMP_RS03805 0.27 +0.3 718,061 + MMP_RS03805 0.29 +0.8 718,228 + MMP_RS03805 0.37 -1.4 718,297 - MMP_RS03805 0.41 -0.2 718,319 - MMP_RS03805 0.42 -0.7 718,388 - MMP_RS03805 0.46 -0.8 718,388 - MMP_RS03805 0.46 -0.7 718,399 - MMP_RS03805 0.46 -0.9 718,399 - MMP_RS03805 0.46 +0.1 718,399 - MMP_RS03805 0.46 +0.6 718,400 + MMP_RS03805 0.46 -0.5 718,473 - MMP_RS03805 0.50 +0.5 718,474 + MMP_RS03805 0.50 +0.6 718,561 + MMP_RS03805 0.54 -0.7 718,561 + MMP_RS03805 0.54 -2.2 718,577 + MMP_RS03805 0.55 +1.6 718,639 + MMP_RS03805 0.58 +0.9 718,659 + MMP_RS03805 0.60 -2.2 718,659 + MMP_RS03805 0.60 -0.7 718,709 + MMP_RS03805 0.62 +0.2 718,725 - MMP_RS03805 0.63 -1.0 718,773 + MMP_RS03805 0.65 +0.2 718,999 - MMP_RS03805 0.77 -0.2 719,025 - MMP_RS03805 0.78 +2.0 719,111 - MMP_RS03805 0.83 +1.2 719,111 - MMP_RS03805 0.83 -0.6 719,132 - MMP_RS03805 0.84 -1.6 719,134 - MMP_RS03805 0.84 +0.4 719,135 + MMP_RS03805 0.84 +0.3 719,153 + MMP_RS03805 0.85 -1.1 719,174 + MMP_RS03805 0.86 +0.8 719,174 + MMP_RS03805 0.86 +0.8 719,238 + MMP_RS03805 0.89 +0.5 719,250 - MMP_RS03805 0.90 -1.3 719,291 - +2.9 719,295 + +1.5 719,479 + +1.3 719,494 - +0.9 719,525 - +3.1 719,687 - MMP_RS03810 0.16 +0.5 719,857 - MMP_RS03810 0.26 +0.6 719,858 + MMP_RS03810 0.26 +0.7 719,897 - MMP_RS03810 0.29 +1.0 720,072 + MMP_RS03810 0.40 -3.7 720,136 - MMP_RS03810 0.44 -0.2 720,219 - MMP_RS03810 0.49 +1.2 720,246 + MMP_RS03810 0.51 +2.4 720,264 + MMP_RS03810 0.52 +0.4
Or see this region's nucleotide sequence