Experiment: McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04380 and MMP_RS04385 are separated by 59 nucleotides MMP_RS04385 and MMP_RS04390 are separated by 90 nucleotides MMP_RS04390 and MMP_RS04395 are separated by 63 nucleotides MMP_RS04395 and MMP_RS04400 are separated by 42 nucleotides MMP_RS04400 and MMP_RS04405 are separated by 257 nucleotides MMP_RS04405 and MMP_RS04410 are separated by 50 nucleotides
MMP_RS04380: MMP_RS04380 - DUF4013 domain-containing protein, at 835,811 to 836,656
_RS04380
MMP_RS04385: MMP_RS04385 - hypothetical protein, at 836,716 to 837,114
_RS04385
MMP_RS04390: MMP_RS04390 - hypothetical protein, at 837,205 to 837,441
_RS04390
MMP_RS04395: MMP_RS04395 - Bax inhibitor-1/YccA family protein, at 837,505 to 838,239
_RS04395
MMP_RS04400: MMP_RS04400 - hypothetical protein, at 838,282 to 838,638
_RS04400
MMP_RS04405: MMP_RS04405 - hypothetical protein, at 838,896 to 839,165
_RS04405
MMP_RS04410: MMP_RS04410 - hypothetical protein, at 839,216 to 839,815
_RS04410
Position (kb) 837
838
839 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 836.520 kb on - strand, within MMP_RS04380 at 836.521 kb on + strand, within MMP_RS04380 at 836.567 kb on - strand, within MMP_RS04380 at 836.567 kb on - strand, within MMP_RS04380 at 836.585 kb on - strand at 836.594 kb on - strand at 836.594 kb on - strand at 836.595 kb on + strand at 836.596 kb on - strand at 836.596 kb on - strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.597 kb on + strand at 836.599 kb on - strand at 836.599 kb on - strand at 836.600 kb on + strand at 836.600 kb on + strand at 836.653 kb on + strand at 836.655 kb on + strand at 836.684 kb on - strand at 836.685 kb on + strand at 836.685 kb on + strand at 836.690 kb on - strand at 836.694 kb on - strand at 836.722 kb on - strand at 836.722 kb on - strand at 836.723 kb on + strand at 836.723 kb on + strand at 836.723 kb on + strand at 836.728 kb on + strand at 836.760 kb on - strand, within MMP_RS04385 at 836.760 kb on - strand, within MMP_RS04385 at 836.760 kb on - strand, within MMP_RS04385 at 836.760 kb on - strand, within MMP_RS04385 at 836.761 kb on + strand, within MMP_RS04385 at 836.761 kb on + strand, within MMP_RS04385 at 836.761 kb on + strand, within MMP_RS04385 at 836.763 kb on + strand, within MMP_RS04385 at 836.763 kb on + strand, within MMP_RS04385 at 836.766 kb on - strand, within MMP_RS04385 at 836.772 kb on + strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.813 kb on - strand, within MMP_RS04385 at 836.814 kb on + strand, within MMP_RS04385 at 836.845 kb on - strand, within MMP_RS04385 at 836.845 kb on - strand, within MMP_RS04385 at 836.845 kb on - strand, within MMP_RS04385 at 836.850 kb on + strand, within MMP_RS04385 at 836.877 kb on - strand, within MMP_RS04385 at 836.877 kb on - strand, within MMP_RS04385 at 836.891 kb on - strand, within MMP_RS04385 at 836.892 kb on + strand, within MMP_RS04385 at 836.921 kb on + strand, within MMP_RS04385 at 836.930 kb on + strand, within MMP_RS04385 at 836.948 kb on - strand, within MMP_RS04385 at 836.957 kb on + strand, within MMP_RS04385 at 836.961 kb on - strand, within MMP_RS04385 at 836.962 kb on + strand, within MMP_RS04385 at 836.981 kb on - strand, within MMP_RS04385 at 837.017 kb on - strand, within MMP_RS04385 at 837.019 kb on - strand, within MMP_RS04385 at 837.020 kb on + strand, within MMP_RS04385 at 837.031 kb on - strand, within MMP_RS04385 at 837.034 kb on + strand, within MMP_RS04385 at 837.042 kb on - strand, within MMP_RS04385 at 837.042 kb on - strand, within MMP_RS04385 at 837.043 kb on + strand, within MMP_RS04385 at 837.043 kb on + strand, within MMP_RS04385 at 837.044 kb on - strand at 837.044 kb on - strand, within MMP_RS04385 at 837.044 kb on - strand, within MMP_RS04385 at 837.045 kb on + strand, within MMP_RS04385 at 837.045 kb on + strand, within MMP_RS04385 at 837.048 kb on - strand, within MMP_RS04385 at 837.048 kb on - strand, within MMP_RS04385 at 837.048 kb on - strand, within MMP_RS04385 at 837.079 kb on - strand at 837.079 kb on - strand at 837.107 kb on - strand at 837.121 kb on - strand at 837.159 kb on - strand at 837.164 kb on - strand at 837.164 kb on - strand at 837.165 kb on + strand at 837.180 kb on - strand at 837.180 kb on - strand at 837.181 kb on + strand at 837.183 kb on + strand at 837.183 kb on + strand at 837.186 kb on - strand at 837.186 kb on - strand at 837.186 kb on - strand at 837.187 kb on + strand at 837.209 kb on - strand at 837.210 kb on + strand at 837.211 kb on - strand at 837.211 kb on - strand at 837.212 kb on + strand at 837.222 kb on - strand at 837.230 kb on - strand, within MMP_RS04390 at 837.259 kb on - strand, within MMP_RS04390 at 837.259 kb on - strand, within MMP_RS04390 at 837.260 kb on + strand, within MMP_RS04390 at 837.261 kb on - strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.262 kb on + strand, within MMP_RS04390 at 837.264 kb on - strand, within MMP_RS04390 at 837.271 kb on + strand, within MMP_RS04390 at 837.287 kb on - strand, within MMP_RS04390 at 837.287 kb on - strand, within MMP_RS04390 at 837.314 kb on - strand, within MMP_RS04390 at 837.315 kb on + strand, within MMP_RS04390 at 837.356 kb on - strand, within MMP_RS04390 at 837.356 kb on - strand, within MMP_RS04390 at 837.356 kb on - strand, within MMP_RS04390 at 837.450 kb on + strand at 837.500 kb on - strand at 837.500 kb on - strand at 837.500 kb on - strand at 837.502 kb on - strand at 837.502 kb on - strand at 837.502 kb on - strand at 837.503 kb on + strand at 837.503 kb on + strand at 837.504 kb on - strand at 837.504 kb on - strand at 837.505 kb on + strand at 837.538 kb on + strand at 837.560 kb on + strand at 837.584 kb on - strand, within MMP_RS04395 at 837.584 kb on - strand, within MMP_RS04395 at 837.584 kb on - strand, within MMP_RS04395 at 837.585 kb on + strand, within MMP_RS04395 at 837.585 kb on + strand, within MMP_RS04395 at 837.597 kb on + strand, within MMP_RS04395 at 837.600 kb on - strand, within MMP_RS04395 at 837.631 kb on + strand, within MMP_RS04395 at 837.631 kb on + strand, within MMP_RS04395 at 837.805 kb on + strand, within MMP_RS04395 at 837.861 kb on - strand, within MMP_RS04395 at 837.941 kb on - strand, within MMP_RS04395 at 837.942 kb on - strand, within MMP_RS04395 at 837.971 kb on - strand, within MMP_RS04395 at 837.972 kb on + strand, within MMP_RS04395 at 837.972 kb on + strand, within MMP_RS04395 at 837.973 kb on - strand, within MMP_RS04395 at 837.973 kb on - strand, within MMP_RS04395 at 837.974 kb on + strand, within MMP_RS04395 at 837.986 kb on - strand, within MMP_RS04395 at 837.986 kb on - strand, within MMP_RS04395 at 838.011 kb on - strand, within MMP_RS04395 at 838.012 kb on + strand, within MMP_RS04395 at 838.012 kb on + strand, within MMP_RS04395 at 838.068 kb on + strand, within MMP_RS04395 at 838.070 kb on - strand, within MMP_RS04395 at 838.126 kb on - strand, within MMP_RS04395 at 838.138 kb on + strand, within MMP_RS04395 at 838.142 kb on + strand, within MMP_RS04395 at 838.181 kb on - strand at 838.182 kb on + strand at 838.191 kb on + strand at 838.247 kb on - strand at 838.247 kb on - strand at 838.247 kb on - strand at 838.248 kb on + strand at 838.248 kb on + strand at 838.249 kb on - strand at 838.249 kb on - strand at 838.250 kb on + strand at 838.252 kb on - strand at 838.252 kb on - strand at 838.252 kb on - strand at 838.255 kb on - strand at 838.261 kb on - strand at 838.261 kb on - strand at 838.381 kb on - strand, within MMP_RS04400 at 838.430 kb on + strand, within MMP_RS04400 at 838.439 kb on - strand, within MMP_RS04400 at 838.440 kb on + strand, within MMP_RS04400 at 838.440 kb on + strand, within MMP_RS04400 at 838.440 kb on + strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.441 kb on - strand, within MMP_RS04400 at 838.510 kb on - strand, within MMP_RS04400 at 838.534 kb on - strand, within MMP_RS04400 at 838.541 kb on - strand, within MMP_RS04400 at 838.541 kb on - strand, within MMP_RS04400 at 838.554 kb on - strand, within MMP_RS04400 at 838.560 kb on + strand, within MMP_RS04400 at 838.572 kb on - strand, within MMP_RS04400 at 838.573 kb on + strand, within MMP_RS04400 at 838.584 kb on - strand, within MMP_RS04400 at 838.609 kb on - strand at 838.611 kb on - strand at 838.686 kb on + strand at 838.689 kb on + strand at 838.732 kb on + strand at 838.758 kb on - strand at 838.846 kb on + strand at 838.849 kb on - strand at 838.849 kb on - strand at 838.849 kb on - strand at 838.850 kb on + strand at 838.850 kb on + strand at 838.852 kb on + strand at 838.859 kb on - strand at 838.863 kb on - strand at 838.867 kb on - strand at 838.903 kb on + strand at 838.927 kb on + strand, within MMP_RS04405 at 838.943 kb on + strand, within MMP_RS04405 at 838.990 kb on - strand, within MMP_RS04405 at 838.993 kb on - strand, within MMP_RS04405 at 839.004 kb on + strand, within MMP_RS04405 at 839.016 kb on - strand, within MMP_RS04405 at 839.026 kb on - strand, within MMP_RS04405 at 839.049 kb on - strand, within MMP_RS04405 at 839.050 kb on + strand, within MMP_RS04405 at 839.065 kb on - strand, within MMP_RS04405 at 839.076 kb on + strand, within MMP_RS04405 at 839.138 kb on - strand, within MMP_RS04405 at 839.169 kb on + strand at 839.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM remove 836,520 - MMP_RS04380 0.84 +2.2 836,521 + MMP_RS04380 0.84 +0.4 836,567 - MMP_RS04380 0.89 -1.7 836,567 - MMP_RS04380 0.89 -3.0 836,585 - -0.1 836,594 - -0.7 836,594 - -0.7 836,595 + +1.5 836,596 - -1.0 836,596 - +0.8 836,597 + +0.6 836,597 + -0.3 836,597 + -0.6 836,599 - +2.0 836,599 - -1.1 836,600 + -0.9 836,600 + -0.2 836,653 + -0.9 836,655 + -0.1 836,684 - -0.3 836,685 + +0.3 836,685 + -0.4 836,690 - +1.1 836,694 - +0.4 836,722 - +5.0 836,722 - -0.2 836,723 + +0.8 836,723 + +0.3 836,723 + +0.6 836,728 + -1.6 836,760 - MMP_RS04385 0.11 -2.7 836,760 - MMP_RS04385 0.11 -0.6 836,760 - MMP_RS04385 0.11 -0.5 836,760 - MMP_RS04385 0.11 -0.3 836,761 + MMP_RS04385 0.11 +0.1 836,761 + MMP_RS04385 0.11 -0.0 836,761 + MMP_RS04385 0.11 -0.9 836,763 + MMP_RS04385 0.12 -2.0 836,763 + MMP_RS04385 0.12 +1.0 836,766 - MMP_RS04385 0.13 +0.3 836,772 + MMP_RS04385 0.14 -0.5 836,813 - MMP_RS04385 0.24 -0.7 836,813 - MMP_RS04385 0.24 -1.3 836,813 - MMP_RS04385 0.24 +3.5 836,813 - MMP_RS04385 0.24 -0.5 836,814 + MMP_RS04385 0.25 -0.2 836,845 - MMP_RS04385 0.32 -0.5 836,845 - MMP_RS04385 0.32 +0.0 836,845 - MMP_RS04385 0.32 -0.3 836,850 + MMP_RS04385 0.34 -0.5 836,877 - MMP_RS04385 0.40 -0.4 836,877 - MMP_RS04385 0.40 +0.5 836,891 - MMP_RS04385 0.44 -0.4 836,892 + MMP_RS04385 0.44 -0.9 836,921 + MMP_RS04385 0.51 -0.4 836,930 + MMP_RS04385 0.54 +1.4 836,948 - MMP_RS04385 0.58 -0.7 836,957 + MMP_RS04385 0.60 -0.5 836,961 - MMP_RS04385 0.61 +0.3 836,962 + MMP_RS04385 0.62 -0.1 836,981 - MMP_RS04385 0.66 +0.2 837,017 - MMP_RS04385 0.75 +0.1 837,019 - MMP_RS04385 0.76 -0.0 837,020 + MMP_RS04385 0.76 +1.2 837,031 - MMP_RS04385 0.79 +0.1 837,034 + MMP_RS04385 0.80 -3.3 837,042 - MMP_RS04385 0.82 +0.6 837,042 - MMP_RS04385 0.82 -3.0 837,043 + MMP_RS04385 0.82 +0.1 837,043 + MMP_RS04385 0.82 -0.8 837,044 - -1.4 837,044 - MMP_RS04385 0.82 +0.8 837,044 - MMP_RS04385 0.82 -0.5 837,045 + MMP_RS04385 0.82 +0.8 837,045 + MMP_RS04385 0.82 -1.2 837,048 - MMP_RS04385 0.83 +2.3 837,048 - MMP_RS04385 0.83 -0.2 837,048 - MMP_RS04385 0.83 -2.4 837,079 - -0.3 837,079 - +0.6 837,107 - -2.8 837,121 - -0.7 837,159 - -1.6 837,164 - +1.2 837,164 - -0.4 837,165 + +0.5 837,180 - -2.4 837,180 - -0.7 837,181 + +0.2 837,183 + +0.1 837,183 + +1.4 837,186 - -1.4 837,186 - +0.2 837,186 - -1.8 837,187 + +0.8 837,209 - +0.2 837,210 + +1.0 837,211 - -0.1 837,211 - +1.2 837,212 + +0.0 837,222 - -0.0 837,230 - MMP_RS04390 0.11 -2.1 837,259 - MMP_RS04390 0.23 -1.1 837,259 - MMP_RS04390 0.23 -0.2 837,260 + MMP_RS04390 0.23 +0.6 837,261 - MMP_RS04390 0.24 +3.3 837,262 + MMP_RS04390 0.24 +0.5 837,262 + MMP_RS04390 0.24 -0.3 837,262 + MMP_RS04390 0.24 -0.6 837,262 + MMP_RS04390 0.24 -1.4 837,264 - MMP_RS04390 0.25 -1.6 837,271 + MMP_RS04390 0.28 -2.9 837,287 - MMP_RS04390 0.35 +0.6 837,287 - MMP_RS04390 0.35 +0.5 837,314 - MMP_RS04390 0.46 +0.5 837,315 + MMP_RS04390 0.46 +1.3 837,356 - MMP_RS04390 0.64 -1.2 837,356 - MMP_RS04390 0.64 -0.8 837,356 - MMP_RS04390 0.64 +0.2 837,450 + +0.8 837,500 - -0.3 837,500 - -0.0 837,500 - -0.1 837,502 - -0.5 837,502 - +0.6 837,502 - +2.7 837,503 + -0.0 837,503 + -0.6 837,504 - +2.3 837,504 - +1.1 837,505 + -1.7 837,538 + +2.1 837,560 + -1.1 837,584 - MMP_RS04395 0.11 -0.2 837,584 - MMP_RS04395 0.11 +0.9 837,584 - MMP_RS04395 0.11 +0.4 837,585 + MMP_RS04395 0.11 +0.5 837,585 + MMP_RS04395 0.11 -2.5 837,597 + MMP_RS04395 0.13 -0.3 837,600 - MMP_RS04395 0.13 +0.7 837,631 + MMP_RS04395 0.17 -2.7 837,631 + MMP_RS04395 0.17 -0.9 837,805 + MMP_RS04395 0.41 +0.7 837,861 - MMP_RS04395 0.48 -0.1 837,941 - MMP_RS04395 0.59 +0.2 837,942 - MMP_RS04395 0.59 +0.0 837,971 - MMP_RS04395 0.63 +0.4 837,972 + MMP_RS04395 0.64 +0.4 837,972 + MMP_RS04395 0.64 -3.2 837,973 - MMP_RS04395 0.64 -1.6 837,973 - MMP_RS04395 0.64 +0.2 837,974 + MMP_RS04395 0.64 -0.8 837,986 - MMP_RS04395 0.65 +0.0 837,986 - MMP_RS04395 0.65 -0.5 838,011 - MMP_RS04395 0.69 +1.4 838,012 + MMP_RS04395 0.69 -2.1 838,012 + MMP_RS04395 0.69 -0.1 838,068 + MMP_RS04395 0.77 +0.2 838,070 - MMP_RS04395 0.77 +0.8 838,126 - MMP_RS04395 0.84 +1.2 838,138 + MMP_RS04395 0.86 +0.9 838,142 + MMP_RS04395 0.87 +1.8 838,181 - +1.5 838,182 + -2.7 838,191 + +0.5 838,247 - -0.9 838,247 - +0.3 838,247 - -1.3 838,248 + +0.4 838,248 + -0.9 838,249 - +0.1 838,249 - -0.4 838,250 + -0.8 838,252 - -1.3 838,252 - -1.1 838,252 - +0.5 838,255 - -0.3 838,261 - -2.0 838,261 - +0.8 838,381 - MMP_RS04400 0.28 -1.2 838,430 + MMP_RS04400 0.41 +0.6 838,439 - MMP_RS04400 0.44 +0.1 838,440 + MMP_RS04400 0.44 -1.0 838,440 + MMP_RS04400 0.44 -0.9 838,440 + MMP_RS04400 0.44 -1.5 838,441 - MMP_RS04400 0.45 +3.5 838,441 - MMP_RS04400 0.45 -2.3 838,441 - MMP_RS04400 0.45 -0.9 838,441 - MMP_RS04400 0.45 +0.8 838,510 - MMP_RS04400 0.64 -5.1 838,534 - MMP_RS04400 0.71 -0.1 838,541 - MMP_RS04400 0.73 +1.6 838,541 - MMP_RS04400 0.73 -0.3 838,554 - MMP_RS04400 0.76 +2.1 838,560 + MMP_RS04400 0.78 -0.0 838,572 - MMP_RS04400 0.81 -0.0 838,573 + MMP_RS04400 0.82 -0.8 838,584 - MMP_RS04400 0.85 -0.8 838,609 - -1.1 838,611 - -1.0 838,686 + +1.7 838,689 + +1.0 838,732 + +1.0 838,758 - +0.8 838,846 + +0.2 838,849 - -0.5 838,849 - +1.1 838,849 - +1.0 838,850 + +0.1 838,850 + +1.4 838,852 + -1.3 838,859 - +0.1 838,863 - -0.5 838,867 - -2.0 838,903 + +2.1 838,927 + MMP_RS04405 0.11 -0.8 838,943 + MMP_RS04405 0.17 -0.4 838,990 - MMP_RS04405 0.35 +1.1 838,993 - MMP_RS04405 0.36 -1.0 839,004 + MMP_RS04405 0.40 -0.5 839,016 - MMP_RS04405 0.44 +0.1 839,026 - MMP_RS04405 0.48 +0.2 839,049 - MMP_RS04405 0.57 +2.8 839,050 + MMP_RS04405 0.57 -0.3 839,065 - MMP_RS04405 0.63 +1.3 839,076 + MMP_RS04405 0.67 +0.9 839,138 - MMP_RS04405 0.90 -0.8 839,169 + +0.6 839,174 + +1.3
Or see this region's nucleotide sequence