Experiment: McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03805 and MMP_RS03810 overlap by 4 nucleotides MMP_RS03810 and MMP_RS03815 are separated by 7 nucleotides
MMP_RS03805: MMP_RS03805 - excinuclease ABC subunit UvrB, at 717,504 to 719,444
_RS03805
MMP_RS03810: MMP_RS03810 - excinuclease ABC subunit UvrC, at 719,441 to 721,024
_RS03810
MMP_RS03815: MMP_RS03815 - excinuclease ABC subunit UvrA, at 721,032 to 723,887
_RS03815
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 718.473 kb on - strand, within MMP_RS03805 at 718.474 kb on + strand, within MMP_RS03805 at 718.561 kb on + strand, within MMP_RS03805 at 718.561 kb on + strand, within MMP_RS03805 at 718.577 kb on + strand, within MMP_RS03805 at 718.639 kb on + strand, within MMP_RS03805 at 718.659 kb on + strand, within MMP_RS03805 at 718.659 kb on + strand, within MMP_RS03805 at 718.709 kb on + strand, within MMP_RS03805 at 718.725 kb on - strand, within MMP_RS03805 at 718.773 kb on + strand, within MMP_RS03805 at 718.999 kb on - strand, within MMP_RS03805 at 719.025 kb on - strand, within MMP_RS03805 at 719.111 kb on - strand, within MMP_RS03805 at 719.111 kb on - strand, within MMP_RS03805 at 719.132 kb on - strand, within MMP_RS03805 at 719.134 kb on - strand, within MMP_RS03805 at 719.135 kb on + strand, within MMP_RS03805 at 719.153 kb on + strand, within MMP_RS03805 at 719.174 kb on + strand, within MMP_RS03805 at 719.174 kb on + strand, within MMP_RS03805 at 719.238 kb on + strand, within MMP_RS03805 at 719.250 kb on - strand, within MMP_RS03805 at 719.291 kb on - strand at 719.295 kb on + strand at 719.479 kb on + strand at 719.494 kb on - strand at 719.525 kb on - strand at 719.687 kb on - strand, within MMP_RS03810 at 719.857 kb on - strand, within MMP_RS03810 at 719.858 kb on + strand, within MMP_RS03810 at 719.897 kb on - strand, within MMP_RS03810 at 720.072 kb on + strand, within MMP_RS03810 at 720.136 kb on - strand, within MMP_RS03810 at 720.219 kb on - strand, within MMP_RS03810 at 720.246 kb on + strand, within MMP_RS03810 at 720.264 kb on + strand, within MMP_RS03810 at 720.502 kb on + strand, within MMP_RS03810 at 720.502 kb on + strand, within MMP_RS03810 at 720.526 kb on - strand, within MMP_RS03810 at 720.527 kb on + strand, within MMP_RS03810 at 720.527 kb on + strand, within MMP_RS03810 at 720.549 kb on + strand, within MMP_RS03810 at 720.630 kb on - strand, within MMP_RS03810 at 720.652 kb on - strand, within MMP_RS03810 at 720.652 kb on - strand, within MMP_RS03810 at 720.652 kb on - strand, within MMP_RS03810 at 720.653 kb on + strand, within MMP_RS03810 at 720.729 kb on - strand, within MMP_RS03810 at 720.729 kb on - strand, within MMP_RS03810 at 720.729 kb on - strand, within MMP_RS03810 at 720.730 kb on + strand, within MMP_RS03810 at 720.730 kb on + strand, within MMP_RS03810 at 720.730 kb on + strand, within MMP_RS03810 at 720.731 kb on - strand, within MMP_RS03810 at 720.732 kb on + strand, within MMP_RS03810 at 720.733 kb on - strand, within MMP_RS03810 at 720.734 kb on + strand, within MMP_RS03810 at 720.734 kb on + strand, within MMP_RS03810 at 720.736 kb on + strand, within MMP_RS03810 at 720.759 kb on + strand, within MMP_RS03810 at 720.983 kb on + strand at 721.016 kb on + strand at 721.210 kb on + strand at 721.214 kb on - strand at 721.304 kb on + strand at 721.304 kb on + strand at 721.305 kb on - strand at 721.512 kb on + strand, within MMP_RS03815 at 721.523 kb on - strand, within MMP_RS03815 at 721.525 kb on - strand, within MMP_RS03815 at 721.737 kb on + strand, within MMP_RS03815 at 721.753 kb on - strand, within MMP_RS03815 at 721.857 kb on + strand, within MMP_RS03815
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete 1,2-dimethyl-5-nitroimidazole 0.00833333333333333 mM remove 718,473 - MMP_RS03805 0.50 -0.8 718,474 + MMP_RS03805 0.50 -0.9 718,561 + MMP_RS03805 0.54 -1.2 718,561 + MMP_RS03805 0.54 -2.4 718,577 + MMP_RS03805 0.55 +0.6 718,639 + MMP_RS03805 0.58 +1.1 718,659 + MMP_RS03805 0.60 -1.0 718,659 + MMP_RS03805 0.60 -0.6 718,709 + MMP_RS03805 0.62 -0.9 718,725 - MMP_RS03805 0.63 +1.9 718,773 + MMP_RS03805 0.65 +2.2 718,999 - MMP_RS03805 0.77 +0.7 719,025 - MMP_RS03805 0.78 -1.0 719,111 - MMP_RS03805 0.83 +0.6 719,111 - MMP_RS03805 0.83 +0.5 719,132 - MMP_RS03805 0.84 -1.2 719,134 - MMP_RS03805 0.84 -0.7 719,135 + MMP_RS03805 0.84 -0.4 719,153 + MMP_RS03805 0.85 -0.5 719,174 + MMP_RS03805 0.86 -1.0 719,174 + MMP_RS03805 0.86 +1.2 719,238 + MMP_RS03805 0.89 +0.0 719,250 - MMP_RS03805 0.90 -0.4 719,291 - +0.2 719,295 + -1.9 719,479 + +3.9 719,494 - -1.0 719,525 - -0.2 719,687 - MMP_RS03810 0.16 +0.2 719,857 - MMP_RS03810 0.26 +1.6 719,858 + MMP_RS03810 0.26 -1.1 719,897 - MMP_RS03810 0.29 -1.4 720,072 + MMP_RS03810 0.40 -2.6 720,136 - MMP_RS03810 0.44 -0.8 720,219 - MMP_RS03810 0.49 -1.3 720,246 + MMP_RS03810 0.51 -0.9 720,264 + MMP_RS03810 0.52 +4.4 720,502 + MMP_RS03810 0.67 -0.4 720,502 + MMP_RS03810 0.67 +0.0 720,526 - MMP_RS03810 0.68 +2.0 720,527 + MMP_RS03810 0.69 -0.3 720,527 + MMP_RS03810 0.69 -1.8 720,549 + MMP_RS03810 0.70 -0.5 720,630 - MMP_RS03810 0.75 +0.1 720,652 - MMP_RS03810 0.76 -0.3 720,652 - MMP_RS03810 0.76 +0.1 720,652 - MMP_RS03810 0.76 +0.4 720,653 + MMP_RS03810 0.77 -0.8 720,729 - MMP_RS03810 0.81 -2.1 720,729 - MMP_RS03810 0.81 -5.3 720,729 - MMP_RS03810 0.81 -0.1 720,730 + MMP_RS03810 0.81 -0.7 720,730 + MMP_RS03810 0.81 -1.6 720,730 + MMP_RS03810 0.81 -1.6 720,731 - MMP_RS03810 0.81 -0.9 720,732 + MMP_RS03810 0.82 +0.5 720,733 - MMP_RS03810 0.82 -0.2 720,734 + MMP_RS03810 0.82 -5.7 720,734 + MMP_RS03810 0.82 +1.1 720,736 + MMP_RS03810 0.82 -0.5 720,759 + MMP_RS03810 0.83 -0.8 720,983 + +0.8 721,016 + -0.2 721,210 + -3.4 721,214 - +0.0 721,304 + +3.7 721,304 + +0.9 721,305 - -0.3 721,512 + MMP_RS03815 0.17 -2.4 721,523 - MMP_RS03815 0.17 -2.3 721,525 - MMP_RS03815 0.17 +0.0 721,737 + MMP_RS03815 0.25 +0.0 721,753 - MMP_RS03815 0.25 -1.7 721,857 + MMP_RS03815 0.29 -1.5
Or see this region's nucleotide sequence