Experiment: McCas_H2_complete Magnesium chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02885 and MMP_RS02890 are separated by 216 nucleotides MMP_RS02890 and MMP_RS02895 are separated by 61 nucleotides
MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601
_RS02885
MMP_RS02890: MMP_RS02890 - TIGR00296 family protein, at 550,818 to 551,429
_RS02890
MMP_RS02895: MMP_RS02895 - DHH family phosphoesterase, at 551,491 to 552,786
_RS02895
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 549.849 kb on + strand, within MMP_RS02885 at 549.853 kb on + strand, within MMP_RS02885 at 549.864 kb on - strand, within MMP_RS02885 at 549.871 kb on - strand, within MMP_RS02885 at 549.872 kb on + strand, within MMP_RS02885 at 549.872 kb on + strand, within MMP_RS02885 at 549.935 kb on - strand, within MMP_RS02885 at 550.018 kb on - strand, within MMP_RS02885 at 550.091 kb on + strand, within MMP_RS02885 at 550.115 kb on + strand, within MMP_RS02885 at 550.153 kb on - strand, within MMP_RS02885 at 550.422 kb on + strand at 550.585 kb on - strand at 550.651 kb on - strand at 550.713 kb on + strand at 550.740 kb on + strand at 550.858 kb on + strand at 550.874 kb on + strand at 550.874 kb on + strand at 550.946 kb on + strand, within MMP_RS02890 at 550.991 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.113 kb on - strand, within MMP_RS02890 at 551.114 kb on + strand, within MMP_RS02890 at 551.170 kb on + strand, within MMP_RS02890 at 551.204 kb on - strand, within MMP_RS02890 at 551.237 kb on + strand, within MMP_RS02890 at 551.261 kb on - strand, within MMP_RS02890 at 551.343 kb on + strand, within MMP_RS02890 at 551.398 kb on - strand at 551.415 kb on - strand at 551.466 kb on + strand at 551.498 kb on - strand at 551.520 kb on - strand at 551.646 kb on + strand, within MMP_RS02895 at 552.050 kb on + strand, within MMP_RS02895 at 552.092 kb on - strand, within MMP_RS02895 at 552.113 kb on + strand, within MMP_RS02895 at 552.131 kb on + strand, within MMP_RS02895 at 552.187 kb on + strand, within MMP_RS02895 at 552.189 kb on + strand, within MMP_RS02895 at 552.300 kb on - strand, within MMP_RS02895 at 552.336 kb on + strand, within MMP_RS02895 at 552.422 kb on - strand, within MMP_RS02895 at 552.425 kb on + strand, within MMP_RS02895
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Magnesium chloride 250 mM remove 549,849 + MMP_RS02885 0.59 +0.3 549,853 + MMP_RS02885 0.60 -0.7 549,864 - MMP_RS02885 0.60 +0.1 549,871 - MMP_RS02885 0.61 +0.8 549,872 + MMP_RS02885 0.61 -1.1 549,872 + MMP_RS02885 0.61 +0.6 549,935 - MMP_RS02885 0.64 +0.7 550,018 - MMP_RS02885 0.68 +0.6 550,091 + MMP_RS02885 0.72 +0.8 550,115 + MMP_RS02885 0.74 +0.3 550,153 - MMP_RS02885 0.76 -0.5 550,422 + -0.2 550,585 - -0.2 550,651 - +0.5 550,713 + +0.5 550,740 + -1.1 550,858 + -0.4 550,874 + +0.8 550,874 + -0.1 550,946 + MMP_RS02890 0.21 -0.0 550,991 - MMP_RS02890 0.28 +0.1 551,113 - MMP_RS02890 0.48 -0.0 551,113 - MMP_RS02890 0.48 -1.2 551,114 + MMP_RS02890 0.48 -3.3 551,170 + MMP_RS02890 0.58 -0.1 551,204 - MMP_RS02890 0.63 -0.4 551,237 + MMP_RS02890 0.68 +0.2 551,261 - MMP_RS02890 0.72 +0.3 551,343 + MMP_RS02890 0.86 -0.4 551,398 - -3.7 551,415 - -0.0 551,466 + +0.7 551,498 - -0.6 551,520 - +0.5 551,646 + MMP_RS02895 0.12 -0.2 552,050 + MMP_RS02895 0.43 +1.1 552,092 - MMP_RS02895 0.46 -0.4 552,113 + MMP_RS02895 0.48 +0.2 552,131 + MMP_RS02895 0.49 +0.1 552,187 + MMP_RS02895 0.54 +0.2 552,189 + MMP_RS02895 0.54 +0.1 552,300 - MMP_RS02895 0.62 +0.8 552,336 + MMP_RS02895 0.65 +0.0 552,422 - MMP_RS02895 0.72 -0.7 552,425 + MMP_RS02895 0.72 +0.4
Or see this region's nucleotide sequence