Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04665

Experiment: McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04660 and MMP_RS04665 are separated by 92 nucleotidesMMP_RS04665 and MMP_RS04670 are separated by 301 nucleotidesMMP_RS04670 and MMP_RS04675 are separated by 9 nucleotides MMP_RS04660: MMP_RS04660 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 890,226 to 891,452 _RS04660 MMP_RS04665: MMP_RS04665 - SBBP repeat-containing protein, at 891,545 to 894,625 _RS04665 MMP_RS04670: MMP_RS04670 - selenouridine synthase SelU-like subunit, at 894,927 to 895,586 _RS04670 MMP_RS04675: MMP_RS04675 - selenouridine synthase SelU-like subunit, at 895,596 to 896,249 _RS04675 Position (kb) 891 892 893 894 895Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 890.594 kb on - strandat 890.595 kb on + strandat 890.716 kb on - strandat 890.906 kb on - strandat 891.420 kb on - strandat 891.431 kb on + strandat 891.442 kb on + strandat 891.473 kb on - strandat 891.479 kb on - strandat 891.543 kb on - strandat 891.544 kb on + strandat 891.626 kb on - strandat 891.666 kb on - strandat 891.666 kb on - strandat 891.667 kb on + strandat 891.667 kb on + strandat 891.669 kb on + strandat 891.669 kb on + strandat 891.692 kb on + strandat 891.692 kb on + strandat 891.701 kb on + strandat 891.805 kb on - strandat 891.808 kb on + strandat 891.827 kb on - strandat 891.828 kb on + strandat 891.828 kb on + strandat 891.828 kb on + strandat 891.832 kb on - strandat 891.862 kb on - strand, within MMP_RS04665at 891.863 kb on + strand, within MMP_RS04665at 891.863 kb on + strand, within MMP_RS04665at 891.917 kb on - strand, within MMP_RS04665at 891.918 kb on + strand, within MMP_RS04665at 891.922 kb on - strand, within MMP_RS04665at 891.962 kb on + strand, within MMP_RS04665at 891.962 kb on + strand, within MMP_RS04665at 891.962 kb on + strand, within MMP_RS04665at 891.988 kb on + strand, within MMP_RS04665at 892.003 kb on - strand, within MMP_RS04665at 892.031 kb on + strand, within MMP_RS04665at 892.038 kb on + strand, within MMP_RS04665at 892.039 kb on - strand, within MMP_RS04665at 892.040 kb on + strand, within MMP_RS04665at 892.043 kb on - strand, within MMP_RS04665at 892.074 kb on + strand, within MMP_RS04665at 892.094 kb on - strand, within MMP_RS04665at 892.094 kb on - strand, within MMP_RS04665at 892.137 kb on - strand, within MMP_RS04665at 892.138 kb on + strand, within MMP_RS04665at 892.138 kb on + strand, within MMP_RS04665at 892.192 kb on - strand, within MMP_RS04665at 892.252 kb on - strand, within MMP_RS04665at 892.262 kb on + strand, within MMP_RS04665at 892.262 kb on + strand, within MMP_RS04665at 892.262 kb on + strand, within MMP_RS04665at 892.282 kb on - strand, within MMP_RS04665at 892.282 kb on - strand, within MMP_RS04665at 892.288 kb on - strand, within MMP_RS04665at 892.289 kb on + strand, within MMP_RS04665at 892.289 kb on + strand, within MMP_RS04665at 892.289 kb on + strand, within MMP_RS04665at 892.292 kb on - strand, within MMP_RS04665at 892.364 kb on - strand, within MMP_RS04665at 892.525 kb on + strand, within MMP_RS04665at 892.550 kb on + strand, within MMP_RS04665at 892.566 kb on + strand, within MMP_RS04665at 892.628 kb on - strand, within MMP_RS04665at 892.629 kb on + strand, within MMP_RS04665at 892.808 kb on + strand, within MMP_RS04665at 892.844 kb on - strand, within MMP_RS04665at 892.944 kb on - strand, within MMP_RS04665at 893.122 kb on - strand, within MMP_RS04665at 893.148 kb on + strand, within MMP_RS04665at 893.175 kb on + strand, within MMP_RS04665at 893.175 kb on + strand, within MMP_RS04665at 893.208 kb on - strand, within MMP_RS04665at 893.208 kb on - strand, within MMP_RS04665at 893.459 kb on + strand, within MMP_RS04665at 893.502 kb on - strand, within MMP_RS04665at 893.502 kb on - strand, within MMP_RS04665at 893.503 kb on + strand, within MMP_RS04665at 893.506 kb on - strand, within MMP_RS04665at 893.506 kb on - strand, within MMP_RS04665at 893.507 kb on + strand, within MMP_RS04665at 893.509 kb on - strand, within MMP_RS04665at 893.521 kb on - strand, within MMP_RS04665at 893.539 kb on + strand, within MMP_RS04665at 893.579 kb on - strand, within MMP_RS04665at 893.579 kb on - strand, within MMP_RS04665at 893.583 kb on - strand, within MMP_RS04665at 893.584 kb on + strand, within MMP_RS04665at 893.584 kb on + strand, within MMP_RS04665at 893.584 kb on + strand, within MMP_RS04665at 893.595 kb on - strand, within MMP_RS04665at 893.596 kb on + strand, within MMP_RS04665at 893.611 kb on - strand, within MMP_RS04665at 893.618 kb on - strand, within MMP_RS04665at 893.618 kb on - strand, within MMP_RS04665at 893.618 kb on - strand, within MMP_RS04665at 893.634 kb on - strand, within MMP_RS04665at 893.635 kb on + strand, within MMP_RS04665at 893.657 kb on - strand, within MMP_RS04665at 893.678 kb on + strand, within MMP_RS04665at 893.678 kb on + strand, within MMP_RS04665at 893.694 kb on - strand, within MMP_RS04665at 893.694 kb on - strand, within MMP_RS04665at 893.730 kb on + strand, within MMP_RS04665at 893.730 kb on + strand, within MMP_RS04665at 893.745 kb on - strand, within MMP_RS04665at 893.809 kb on - strand, within MMP_RS04665at 893.841 kb on - strand, within MMP_RS04665at 893.965 kb on + strand, within MMP_RS04665at 893.992 kb on + strand, within MMP_RS04665at 893.992 kb on + strand, within MMP_RS04665at 894.025 kb on - strand, within MMP_RS04665at 894.026 kb on + strand, within MMP_RS04665at 894.026 kb on + strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.030 kb on - strand, within MMP_RS04665at 894.031 kb on + strand, within MMP_RS04665at 894.048 kb on - strand, within MMP_RS04665at 894.049 kb on + strand, within MMP_RS04665at 894.049 kb on + strand, within MMP_RS04665at 894.061 kb on - strand, within MMP_RS04665at 894.068 kb on - strand, within MMP_RS04665at 894.069 kb on + strand, within MMP_RS04665at 894.069 kb on + strand, within MMP_RS04665at 894.104 kb on + strand, within MMP_RS04665at 894.130 kb on - strand, within MMP_RS04665at 894.147 kb on - strand, within MMP_RS04665at 894.152 kb on - strand, within MMP_RS04665at 894.179 kb on + strand, within MMP_RS04665at 894.179 kb on + strand, within MMP_RS04665at 894.193 kb on - strand, within MMP_RS04665at 894.194 kb on + strand, within MMP_RS04665at 894.196 kb on + strand, within MMP_RS04665at 894.207 kb on - strand, within MMP_RS04665at 894.221 kb on - strand, within MMP_RS04665at 894.252 kb on - strand, within MMP_RS04665at 894.303 kb on - strand, within MMP_RS04665at 894.345 kb on - strandat 894.346 kb on + strandat 894.445 kb on + strandat 894.445 kb on + strandat 894.465 kb on - strandat 894.465 kb on - strandat 894.465 kb on - strandat 894.466 kb on + strandat 894.466 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.483 kb on - strandat 894.484 kb on + strandat 894.538 kb on - strandat 894.539 kb on + strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.649 kb on - strandat 894.650 kb on + strandat 894.665 kb on + strandat 894.665 kb on + strandat 894.666 kb on - strandat 894.680 kb on - strandat 894.681 kb on + strandat 894.727 kb on + strandat 894.757 kb on - strandat 894.757 kb on - strandat 894.758 kb on + strandat 894.762 kb on + strandat 894.804 kb on - strandat 894.805 kb on + strandat 894.809 kb on - strandat 894.810 kb on + strandat 894.892 kb on - strandat 894.903 kb on - strandat 894.906 kb on - strandat 894.911 kb on - strandat 894.911 kb on - strandat 894.922 kb on - strandat 894.988 kb on - strandat 895.000 kb on + strand, within MMP_RS04670at 895.002 kb on + strand, within MMP_RS04670at 895.006 kb on - strand, within MMP_RS04670at 895.007 kb on + strand, within MMP_RS04670at 895.007 kb on + strand, within MMP_RS04670at 895.060 kb on + strand, within MMP_RS04670at 895.067 kb on + strand, within MMP_RS04670at 895.067 kb on + strand, within MMP_RS04670at 895.094 kb on - strand, within MMP_RS04670at 895.130 kb on - strand, within MMP_RS04670at 895.186 kb on - strand, within MMP_RS04670at 895.232 kb on - strand, within MMP_RS04670at 895.233 kb on + strand, within MMP_RS04670at 895.233 kb on + strand, within MMP_RS04670at 895.235 kb on + strand, within MMP_RS04670at 895.417 kb on + strand, within MMP_RS04670at 895.546 kb on + strandat 895.578 kb on + strandat 895.625 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
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890,594 - -1.6
890,595 + -3.9
890,716 - -1.7
890,906 - +1.8
891,420 - -3.8
891,431 + -4.4
891,442 + +0.2
891,473 - +0.2
891,479 - -0.6
891,543 - -0.3
891,544 + -0.6
891,626 - +0.0
891,666 - +1.8
891,666 - -1.5
891,667 + +0.7
891,667 + -0.6
891,669 + +1.1
891,669 + +0.0
891,692 + -0.4
891,692 + +1.6
891,701 + +1.4
891,805 - -0.2
891,808 + +1.0
891,827 - +0.6
891,828 + +0.0
891,828 + +0.5
891,828 + -1.5
891,832 - -1.3
891,862 - MMP_RS04665 0.10 -0.9
891,863 + MMP_RS04665 0.10 +0.7
891,863 + MMP_RS04665 0.10 -0.4
891,917 - MMP_RS04665 0.12 +0.7
891,918 + MMP_RS04665 0.12 +0.6
891,922 - MMP_RS04665 0.12 -5.2
891,962 + MMP_RS04665 0.14 -2.5
891,962 + MMP_RS04665 0.14 -0.0
891,962 + MMP_RS04665 0.14 -0.0
891,988 + MMP_RS04665 0.14 +0.1
892,003 - MMP_RS04665 0.15 -1.9
892,031 + MMP_RS04665 0.16 -0.1
892,038 + MMP_RS04665 0.16 +0.0
892,039 - MMP_RS04665 0.16 +0.4
892,040 + MMP_RS04665 0.16 +0.2
892,043 - MMP_RS04665 0.16 +0.4
892,074 + MMP_RS04665 0.17 +0.5
892,094 - MMP_RS04665 0.18 +1.2
892,094 - MMP_RS04665 0.18 +1.6
892,137 - MMP_RS04665 0.19 +1.2
892,138 + MMP_RS04665 0.19 -1.4
892,138 + MMP_RS04665 0.19 -1.5
892,192 - MMP_RS04665 0.21 -1.3
892,252 - MMP_RS04665 0.23 +1.0
892,262 + MMP_RS04665 0.23 -0.2
892,262 + MMP_RS04665 0.23 -1.4
892,262 + MMP_RS04665 0.23 -1.0
892,282 - MMP_RS04665 0.24 -0.4
892,282 - MMP_RS04665 0.24 +1.2
892,288 - MMP_RS04665 0.24 -1.0
892,289 + MMP_RS04665 0.24 -0.4
892,289 + MMP_RS04665 0.24 +0.6
892,289 + MMP_RS04665 0.24 -0.3
892,292 - MMP_RS04665 0.24 +0.2
892,364 - MMP_RS04665 0.27 -0.3
892,525 + MMP_RS04665 0.32 -1.3
892,550 + MMP_RS04665 0.33 +0.9
892,566 + MMP_RS04665 0.33 +0.2
892,628 - MMP_RS04665 0.35 -0.2
892,629 + MMP_RS04665 0.35 +0.2
892,808 + MMP_RS04665 0.41 -3.3
892,844 - MMP_RS04665 0.42 -0.1
892,944 - MMP_RS04665 0.45 +0.1
893,122 - MMP_RS04665 0.51 +2.0
893,148 + MMP_RS04665 0.52 -1.0
893,175 + MMP_RS04665 0.53 -0.6
893,175 + MMP_RS04665 0.53 -0.9
893,208 - MMP_RS04665 0.54 +0.8
893,208 - MMP_RS04665 0.54 -0.8
893,459 + MMP_RS04665 0.62 +0.7
893,502 - MMP_RS04665 0.64 +0.7
893,502 - MMP_RS04665 0.64 -0.4
893,503 + MMP_RS04665 0.64 -0.8
893,506 - MMP_RS04665 0.64 +0.4
893,506 - MMP_RS04665 0.64 -2.0
893,507 + MMP_RS04665 0.64 +2.2
893,509 - MMP_RS04665 0.64 +0.9
893,521 - MMP_RS04665 0.64 -1.8
893,539 + MMP_RS04665 0.65 +0.4
893,579 - MMP_RS04665 0.66 -0.0
893,579 - MMP_RS04665 0.66 -0.5
893,583 - MMP_RS04665 0.66 +0.8
893,584 + MMP_RS04665 0.66 +1.7
893,584 + MMP_RS04665 0.66 -0.5
893,584 + MMP_RS04665 0.66 -0.7
893,595 - MMP_RS04665 0.67 +0.2
893,596 + MMP_RS04665 0.67 -0.9
893,611 - MMP_RS04665 0.67 +0.5
893,618 - MMP_RS04665 0.67 +1.0
893,618 - MMP_RS04665 0.67 -0.9
893,618 - MMP_RS04665 0.67 -0.2
893,634 - MMP_RS04665 0.68 -1.0
893,635 + MMP_RS04665 0.68 +1.1
893,657 - MMP_RS04665 0.69 +0.4
893,678 + MMP_RS04665 0.69 -4.4
893,678 + MMP_RS04665 0.69 -0.0
893,694 - MMP_RS04665 0.70 +0.4
893,694 - MMP_RS04665 0.70 -0.5
893,730 + MMP_RS04665 0.71 -0.0
893,730 + MMP_RS04665 0.71 -1.2
893,745 - MMP_RS04665 0.71 -1.1
893,809 - MMP_RS04665 0.73 +0.6
893,841 - MMP_RS04665 0.75 +0.8
893,965 + MMP_RS04665 0.79 +0.7
893,992 + MMP_RS04665 0.79 +1.2
893,992 + MMP_RS04665 0.79 +0.4
894,025 - MMP_RS04665 0.80 +1.0
894,026 + MMP_RS04665 0.81 +1.0
894,026 + MMP_RS04665 0.81 +0.3
894,030 - MMP_RS04665 0.81 +0.6
894,030 - MMP_RS04665 0.81 +2.1
894,030 - MMP_RS04665 0.81 -0.2
894,030 - MMP_RS04665 0.81 -0.1
894,031 + MMP_RS04665 0.81 +0.7
894,048 - MMP_RS04665 0.81 +1.0
894,049 + MMP_RS04665 0.81 -0.2
894,049 + MMP_RS04665 0.81 -2.2
894,061 - MMP_RS04665 0.82 -2.0
894,068 - MMP_RS04665 0.82 -0.2
894,069 + MMP_RS04665 0.82 +0.3
894,069 + MMP_RS04665 0.82 +0.3
894,104 + MMP_RS04665 0.83 +0.5
894,130 - MMP_RS04665 0.84 -2.1
894,147 - MMP_RS04665 0.84 +0.3
894,152 - MMP_RS04665 0.85 -4.6
894,179 + MMP_RS04665 0.85 +0.2
894,179 + MMP_RS04665 0.85 -2.7
894,193 - MMP_RS04665 0.86 -0.4
894,194 + MMP_RS04665 0.86 +0.3
894,196 + MMP_RS04665 0.86 +0.6
894,207 - MMP_RS04665 0.86 -1.1
894,221 - MMP_RS04665 0.87 -3.5
894,252 - MMP_RS04665 0.88 -0.4
894,303 - MMP_RS04665 0.90 +1.0
894,345 - +1.0
894,346 + +0.8
894,445 + -1.7
894,445 + +0.4
894,465 - +0.2
894,465 - +0.7
894,465 - +0.5
894,466 + -2.0
894,466 + +0.4
894,470 + -0.0
894,470 + +2.3
894,470 + -0.5
894,483 - +1.5
894,484 + -0.5
894,538 - +0.6
894,539 + -0.9
894,649 - -0.8
894,649 - -2.1
894,649 - +0.3
894,649 - -1.4
894,650 + +2.5
894,665 + +2.0
894,665 + -1.7
894,666 - +0.5
894,680 - +0.7
894,681 + +0.2
894,727 + -0.2
894,757 - +1.2
894,757 - +0.1
894,758 + +0.4
894,762 + +0.5
894,804 - -0.2
894,805 + -0.7
894,809 - -1.5
894,810 + +0.2
894,892 - +1.0
894,903 - -0.0
894,906 - +0.6
894,911 - +0.6
894,911 - +1.3
894,922 - +0.4
894,988 - +0.4
895,000 + MMP_RS04670 0.11 +1.7
895,002 + MMP_RS04670 0.11 +0.7
895,006 - MMP_RS04670 0.12 -1.2
895,007 + MMP_RS04670 0.12 -0.5
895,007 + MMP_RS04670 0.12 -0.9
895,060 + MMP_RS04670 0.20 -0.9
895,067 + MMP_RS04670 0.21 +0.7
895,067 + MMP_RS04670 0.21 -1.6
895,094 - MMP_RS04670 0.25 -3.2
895,130 - MMP_RS04670 0.31 -5.3
895,186 - MMP_RS04670 0.39 +1.1
895,232 - MMP_RS04670 0.46 -0.4
895,233 + MMP_RS04670 0.46 -2.3
895,233 + MMP_RS04670 0.46 +0.8
895,235 + MMP_RS04670 0.47 -3.2
895,417 + MMP_RS04670 0.74 +1.6
895,546 + -0.9
895,578 + -0.3
895,625 - -2.3

Or see this region's nucleotide sequence