Experiment: McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02915 and MMP_RS02920 are separated by 77 nucleotides MMP_RS02920 and MMP_RS02925 are separated by 21 nucleotides MMP_RS02925 and MMP_RS02930 are separated by 123 nucleotides MMP_RS02930 and MMP_RS02935 are separated by 43 nucleotides
MMP_RS02915: MMP_RS02915 - amino acid ABC transporter permease, at 554,992 to 555,651
_RS02915
MMP_RS02920: MMP_RS02920 - DMT family transporter, at 555,729 to 556,619
_RS02920
MMP_RS02925: MMP_RS02925 - ornithine carbamoyltransferase, at 556,641 to 557,555
_RS02925
MMP_RS02930: MMP_RS02930 - class I SAM-dependent methyltransferase, at 557,679 to 558,281
_RS02930
MMP_RS02935: MMP_RS02935 - A24 family peptidase, at 558,325 to 559,017
_RS02935
Position (kb) 556
557
558 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 555.683 kb on - strand at 555.684 kb on + strand at 555.699 kb on - strand at 555.993 kb on - strand, within MMP_RS02920 at 555.995 kb on - strand, within MMP_RS02920 at 555.999 kb on - strand, within MMP_RS02920 at 556.000 kb on + strand, within MMP_RS02920 at 556.000 kb on + strand, within MMP_RS02920 at 556.000 kb on + strand, within MMP_RS02920 at 556.134 kb on - strand, within MMP_RS02920 at 556.204 kb on - strand, within MMP_RS02920 at 556.204 kb on - strand, within MMP_RS02920 at 556.218 kb on - strand, within MMP_RS02920 at 556.219 kb on + strand, within MMP_RS02920 at 556.245 kb on - strand, within MMP_RS02920 at 556.263 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.267 kb on - strand, within MMP_RS02920 at 556.272 kb on + strand, within MMP_RS02920 at 556.272 kb on + strand, within MMP_RS02920 at 556.273 kb on - strand, within MMP_RS02920 at 556.273 kb on - strand, within MMP_RS02920 at 556.274 kb on + strand, within MMP_RS02920 at 556.278 kb on - strand, within MMP_RS02920 at 556.342 kb on - strand, within MMP_RS02920 at 556.605 kb on + strand at 557.086 kb on + strand at 557.086 kb on + strand at 557.383 kb on + strand at 557.547 kb on - strand at 557.593 kb on + strand at 557.617 kb on - strand at 557.618 kb on + strand at 557.624 kb on - strand at 557.631 kb on + strand at 557.636 kb on + strand at 557.658 kb on + strand at 557.658 kb on + strand at 557.762 kb on - strand, within MMP_RS02930 at 557.996 kb on - strand, within MMP_RS02930 at 558.073 kb on - strand, within MMP_RS02930 at 558.192 kb on - strand, within MMP_RS02930 at 558.227 kb on - strand at 558.290 kb on - strand at 558.301 kb on - strand at 558.302 kb on + strand at 558.334 kb on - strand at 558.334 kb on - strand at 558.460 kb on + strand, within MMP_RS02935
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete 2,2-dibromo-2-cyanoacetamide 0.0333333333333333 mM remove 555,683 - +0.2 555,684 + -0.9 555,699 - +1.1 555,993 - MMP_RS02920 0.30 +0.8 555,995 - MMP_RS02920 0.30 -0.6 555,999 - MMP_RS02920 0.30 +0.4 556,000 + MMP_RS02920 0.30 -0.6 556,000 + MMP_RS02920 0.30 +0.9 556,000 + MMP_RS02920 0.30 -4.5 556,134 - MMP_RS02920 0.45 +0.4 556,204 - MMP_RS02920 0.53 +0.3 556,204 - MMP_RS02920 0.53 +0.1 556,218 - MMP_RS02920 0.55 -1.8 556,219 + MMP_RS02920 0.55 -1.0 556,245 - MMP_RS02920 0.58 +0.0 556,263 - MMP_RS02920 0.60 +0.1 556,267 - MMP_RS02920 0.60 -0.2 556,267 - MMP_RS02920 0.60 +0.2 556,267 - MMP_RS02920 0.60 +1.3 556,267 - MMP_RS02920 0.60 +1.6 556,272 + MMP_RS02920 0.61 +0.2 556,272 + MMP_RS02920 0.61 +0.9 556,273 - MMP_RS02920 0.61 +0.8 556,273 - MMP_RS02920 0.61 +1.5 556,274 + MMP_RS02920 0.61 -0.5 556,278 - MMP_RS02920 0.62 +0.7 556,342 - MMP_RS02920 0.69 -1.7 556,605 + -1.3 557,086 + -3.8 557,086 + -3.8 557,383 + -3.1 557,547 - -3.5 557,593 + -3.4 557,617 - -1.2 557,618 + -3.0 557,624 - -2.7 557,631 + -2.3 557,636 + -1.6 557,658 + -0.8 557,658 + +0.1 557,762 - MMP_RS02930 0.14 -0.1 557,996 - MMP_RS02930 0.53 -1.2 558,073 - MMP_RS02930 0.65 -4.7 558,192 - MMP_RS02930 0.85 +2.0 558,227 - +0.5 558,290 - -0.0 558,301 - -0.6 558,302 + -0.0 558,334 - +0.8 558,334 - -0.7 558,460 + MMP_RS02935 0.19 +0.5
Or see this region's nucleotide sequence