Experiment: McCas_H2_complete Hydroxylamine 2.08333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00865 and MMP_RS08930 are separated by 268 nucleotides MMP_RS08930 and MMP_RS00870 are separated by 25 nucleotides MMP_RS00870 and MMP_RS00875 are separated by 49 nucleotides
MMP_RS00865: MMP_RS00865 - SLC13 family permease, at 162,132 to 163,472
_RS00865
MMP_RS08930: MMP_RS08930 - hypothetical protein, at 163,741 to 163,899
_RS08930
MMP_RS00870: MMP_RS00870 - homocitrate synthase family protein, at 163,925 to 165,085
_RS00870
MMP_RS00875: MMP_RS00875 - methanogenesis marker 3 protein, at 165,135 to 166,640
_RS00875
Position (kb)
163
164
165
166 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 163.113 kb on + strand, within MMP_RS00865 at 163.140 kb on - strand, within MMP_RS00865 at 163.360 kb on - strand at 163.420 kb on - strand at 163.513 kb on - strand at 163.562 kb on + strand at 163.566 kb on - strand at 163.567 kb on + strand at 163.569 kb on + strand at 163.569 kb on + strand at 163.579 kb on - strand at 163.580 kb on + strand at 163.580 kb on + strand at 163.621 kb on - strand at 163.622 kb on + strand at 163.626 kb on + strand at 163.644 kb on - strand at 163.645 kb on + strand at 163.648 kb on - strand at 163.654 kb on - strand at 163.655 kb on + strand at 163.684 kb on - strand at 163.685 kb on + strand at 163.742 kb on - strand at 163.777 kb on - strand, within MMP_RS08930 at 163.867 kb on + strand, within MMP_RS08930 at 163.887 kb on - strand at 163.900 kb on + strand at 164.146 kb on + strand at 164.513 kb on + strand at 164.517 kb on - strand at 164.517 kb on - strand at 164.607 kb on + strand at 164.723 kb on + strand at 165.108 kb on - strand at 165.160 kb on - strand at 165.160 kb on - strand at 165.164 kb on - strand at 165.206 kb on - strand at 165.210 kb on - strand at 165.301 kb on - strand at 165.411 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Hydroxylamine 2.08333333333333 mM remove 163,113 + MMP_RS00865 0.73 -4.0 163,140 - MMP_RS00865 0.75 +1.1 163,360 - +1.1 163,420 - +0.5 163,513 - +0.8 163,562 + -1.3 163,566 - -0.1 163,567 + -3.8 163,569 + +1.6 163,569 + -2.1 163,579 - -1.1 163,580 + +1.3 163,580 + +0.3 163,621 - -0.3 163,622 + -0.3 163,626 + +0.2 163,644 - -0.2 163,645 + -0.2 163,648 - +0.5 163,654 - -0.7 163,655 + +1.5 163,684 - +1.2 163,685 + +1.1 163,742 - +1.7 163,777 - MMP_RS08930 0.23 +2.4 163,867 + MMP_RS08930 0.79 +1.0 163,887 - -0.9 163,900 + +0.4 164,146 + -3.2 164,513 + -1.2 164,517 - -2.4 164,517 - -3.9 164,607 + -1.3 164,723 + -3.4 165,108 - -4.1 165,160 - -2.9 165,160 - -0.8 165,164 - -3.3 165,206 - -3.9 165,210 - -3.3 165,301 - -2.7 165,411 - -2.2
Or see this region's nucleotide sequence