Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03880

Experiment: McCas_H2_complete Chlorite 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03880 and MMP_RS03885 are separated by 59 nucleotides MMP_RS03880: MMP_RS03880 - Fic family protein, at 736,065 to 737,234 _RS03880 MMP_RS03885: MMP_RS03885 - tyrosine-type recombinase/integrase, at 737,294 to 738,268 _RS03885 Position (kb) 736 737 738Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 735.090 kb on + strandat 735.438 kb on + strandat 735.438 kb on + strandat 735.441 kb on + strandat 735.458 kb on + strandat 735.458 kb on + strandat 735.496 kb on + strandat 735.531 kb on + strandat 735.531 kb on + strandat 735.965 kb on + strandat 735.987 kb on - strandat 735.987 kb on - strandat 736.019 kb on - strandat 736.107 kb on + strandat 736.128 kb on - strandat 736.164 kb on - strandat 736.164 kb on - strandat 736.165 kb on + strandat 736.165 kb on + strandat 736.166 kb on - strandat 736.219 kb on - strand, within MMP_RS03880at 736.220 kb on + strand, within MMP_RS03880at 736.264 kb on - strand, within MMP_RS03880at 736.264 kb on - strand, within MMP_RS03880at 736.292 kb on + strand, within MMP_RS03880at 736.306 kb on - strand, within MMP_RS03880at 736.327 kb on - strand, within MMP_RS03880at 736.327 kb on - strand, within MMP_RS03880at 736.328 kb on + strand, within MMP_RS03880at 736.328 kb on + strand, within MMP_RS03880at 736.328 kb on + strand, within MMP_RS03880at 736.331 kb on - strand, within MMP_RS03880at 736.331 kb on - strand, within MMP_RS03880at 736.332 kb on + strand, within MMP_RS03880at 736.355 kb on + strand, within MMP_RS03880at 736.393 kb on - strand, within MMP_RS03880at 736.409 kb on - strand, within MMP_RS03880at 736.432 kb on - strand, within MMP_RS03880at 736.437 kb on + strand, within MMP_RS03880at 736.473 kb on + strand, within MMP_RS03880at 736.477 kb on - strand, within MMP_RS03880at 736.484 kb on + strand, within MMP_RS03880at 736.539 kb on - strand, within MMP_RS03880at 736.539 kb on - strand, within MMP_RS03880at 736.569 kb on - strand, within MMP_RS03880at 736.605 kb on + strand, within MMP_RS03880at 736.612 kb on - strand, within MMP_RS03880at 736.632 kb on - strand, within MMP_RS03880at 736.682 kb on + strand, within MMP_RS03880at 736.682 kb on + strand, within MMP_RS03880at 736.748 kb on - strand, within MMP_RS03880at 736.748 kb on - strand, within MMP_RS03880at 736.849 kb on - strand, within MMP_RS03880at 736.909 kb on - strand, within MMP_RS03880at 736.909 kb on - strand, within MMP_RS03880at 736.910 kb on + strand, within MMP_RS03880at 736.917 kb on + strand, within MMP_RS03880at 736.975 kb on + strand, within MMP_RS03880at 736.975 kb on + strand, within MMP_RS03880at 736.975 kb on + strand, within MMP_RS03880at 737.031 kb on + strand, within MMP_RS03880at 737.045 kb on - strand, within MMP_RS03880at 737.055 kb on - strand, within MMP_RS03880at 737.056 kb on + strand, within MMP_RS03880at 737.061 kb on + strand, within MMP_RS03880at 737.061 kb on + strand, within MMP_RS03880at 737.061 kb on + strand, within MMP_RS03880at 737.092 kb on - strand, within MMP_RS03880at 737.254 kb on + strandat 737.286 kb on + strandat 737.300 kb on - strandat 737.314 kb on - strandat 737.318 kb on - strandat 737.355 kb on - strandat 737.626 kb on + strand, within MMP_RS03885at 737.690 kb on + strand, within MMP_RS03885at 737.734 kb on + strand, within MMP_RS03885at 737.852 kb on + strand, within MMP_RS03885at 737.852 kb on + strand, within MMP_RS03885at 737.852 kb on + strand, within MMP_RS03885at 737.853 kb on - strand, within MMP_RS03885at 737.853 kb on - strand, within MMP_RS03885at 737.853 kb on - strand, within MMP_RS03885at 737.854 kb on + strand, within MMP_RS03885at 737.854 kb on + strand, within MMP_RS03885at 737.854 kb on + strand, within MMP_RS03885at 737.878 kb on + strand, within MMP_RS03885at 738.065 kb on - strand, within MMP_RS03885at 738.192 kb on - strandat 738.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas_H2_complete Chlorite 1.25 mM
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735,090 + +0.5
735,438 + -1.2
735,438 + -5.0
735,441 + -1.1
735,458 + +1.0
735,458 + -0.1
735,496 + -2.6
735,531 + +0.7
735,531 + -0.3
735,965 + +0.1
735,987 - -0.3
735,987 - -0.2
736,019 - +0.7
736,107 + -0.7
736,128 - -0.2
736,164 - +0.2
736,164 - +0.3
736,165 + -0.8
736,165 + -0.9
736,166 - -3.4
736,219 - MMP_RS03880 0.13 +1.0
736,220 + MMP_RS03880 0.13 +0.5
736,264 - MMP_RS03880 0.17 +0.2
736,264 - MMP_RS03880 0.17 +0.0
736,292 + MMP_RS03880 0.19 +0.3
736,306 - MMP_RS03880 0.21 +0.3
736,327 - MMP_RS03880 0.22 +0.2
736,327 - MMP_RS03880 0.22 +0.3
736,328 + MMP_RS03880 0.22 +0.2
736,328 + MMP_RS03880 0.22 -0.1
736,328 + MMP_RS03880 0.22 +0.8
736,331 - MMP_RS03880 0.23 -0.3
736,331 - MMP_RS03880 0.23 +1.4
736,332 + MMP_RS03880 0.23 +0.1
736,355 + MMP_RS03880 0.25 +0.3
736,393 - MMP_RS03880 0.28 +0.2
736,409 - MMP_RS03880 0.29 +0.4
736,432 - MMP_RS03880 0.31 +0.7
736,437 + MMP_RS03880 0.32 +0.5
736,473 + MMP_RS03880 0.35 -0.5
736,477 - MMP_RS03880 0.35 -1.1
736,484 + MMP_RS03880 0.36 +0.9
736,539 - MMP_RS03880 0.41 -1.3
736,539 - MMP_RS03880 0.41 +0.4
736,569 - MMP_RS03880 0.43 +0.6
736,605 + MMP_RS03880 0.46 +0.7
736,612 - MMP_RS03880 0.47 -0.4
736,632 - MMP_RS03880 0.48 +2.1
736,682 + MMP_RS03880 0.53 +1.7
736,682 + MMP_RS03880 0.53 +0.7
736,748 - MMP_RS03880 0.58 +0.9
736,748 - MMP_RS03880 0.58 -0.5
736,849 - MMP_RS03880 0.67 +0.4
736,909 - MMP_RS03880 0.72 +0.0
736,909 - MMP_RS03880 0.72 +0.0
736,910 + MMP_RS03880 0.72 +0.2
736,917 + MMP_RS03880 0.73 -0.0
736,975 + MMP_RS03880 0.78 -0.8
736,975 + MMP_RS03880 0.78 +0.1
736,975 + MMP_RS03880 0.78 +0.7
737,031 + MMP_RS03880 0.83 +0.3
737,045 - MMP_RS03880 0.84 +1.2
737,055 - MMP_RS03880 0.85 -0.2
737,056 + MMP_RS03880 0.85 +0.6
737,061 + MMP_RS03880 0.85 -2.0
737,061 + MMP_RS03880 0.85 +0.2
737,061 + MMP_RS03880 0.85 +0.2
737,092 - MMP_RS03880 0.88 -0.1
737,254 + +1.4
737,286 + -0.0
737,300 - +0.8
737,314 - +0.6
737,318 - +0.8
737,355 - +0.9
737,626 + MMP_RS03885 0.34 +0.1
737,690 + MMP_RS03885 0.41 +0.9
737,734 + MMP_RS03885 0.45 +0.8
737,852 + MMP_RS03885 0.57 -0.8
737,852 + MMP_RS03885 0.57 +0.2
737,852 + MMP_RS03885 0.57 +0.8
737,853 - MMP_RS03885 0.57 -0.4
737,853 - MMP_RS03885 0.57 +0.4
737,853 - MMP_RS03885 0.57 -1.3
737,854 + MMP_RS03885 0.57 +0.1
737,854 + MMP_RS03885 0.57 +0.3
737,854 + MMP_RS03885 0.57 -0.3
737,878 + MMP_RS03885 0.60 -0.4
738,065 - MMP_RS03885 0.79 -0.1
738,192 - +0.6
738,193 + +0.2

Or see this region's nucleotide sequence