Experiment: McCas_H2_complete Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02760 and MMP_RS02765 are separated by 4 nucleotides MMP_RS02765 and MMP_RS02770 are separated by 194 nucleotides MMP_RS02770 and MMP_RS02775 are separated by 40 nucleotides
MMP_RS02760: MMP_RS02760 - COG1361 S-layer family protein, at 527,825 to 529,141
_RS02760
MMP_RS02765: MMP_RS02765 - ABC transporter ATP-binding protein, at 529,146 to 529,850
_RS02765
MMP_RS02770: MMP_RS02770 - hypothetical protein, at 530,045 to 530,620
_RS02770
MMP_RS02775: MMP_RS02775 - hypothetical protein, at 530,661 to 531,122
_RS02775
Position (kb) 529
530 Strain fitness (log2 ratio) -2
-1
0
1 at 528.146 kb on + strand, within MMP_RS02760 at 528.153 kb on + strand, within MMP_RS02760 at 528.173 kb on + strand, within MMP_RS02760 at 528.208 kb on - strand, within MMP_RS02760 at 528.295 kb on - strand, within MMP_RS02760 at 528.301 kb on - strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.302 kb on + strand, within MMP_RS02760 at 528.359 kb on - strand, within MMP_RS02760 at 528.401 kb on - strand, within MMP_RS02760 at 528.419 kb on - strand, within MMP_RS02760 at 528.420 kb on + strand, within MMP_RS02760 at 528.478 kb on + strand, within MMP_RS02760 at 528.481 kb on - strand, within MMP_RS02760 at 528.493 kb on - strand, within MMP_RS02760 at 528.625 kb on - strand, within MMP_RS02760 at 528.718 kb on - strand, within MMP_RS02760 at 528.759 kb on + strand, within MMP_RS02760 at 528.852 kb on + strand, within MMP_RS02760 at 528.921 kb on + strand, within MMP_RS02760 at 528.964 kb on - strand, within MMP_RS02760 at 529.143 kb on + strand at 529.225 kb on - strand, within MMP_RS02765 at 529.442 kb on - strand, within MMP_RS02765 at 529.560 kb on - strand, within MMP_RS02765 at 529.566 kb on + strand, within MMP_RS02765 at 529.578 kb on - strand, within MMP_RS02765 at 529.694 kb on - strand, within MMP_RS02765 at 529.850 kb on - strand at 529.946 kb on + strand at 529.972 kb on + strand at 530.014 kb on - strand at 530.014 kb on - strand at 530.042 kb on - strand at 530.102 kb on + strand at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.104 kb on - strand, within MMP_RS02770 at 530.434 kb on + strand, within MMP_RS02770 at 530.459 kb on - strand, within MMP_RS02770 at 530.543 kb on + strand, within MMP_RS02770 at 530.597 kb on - strand at 530.632 kb on - strand at 530.634 kb on - strand at 530.662 kb on - strand at 530.786 kb on + strand, within MMP_RS02775 at 530.807 kb on - strand, within MMP_RS02775 at 530.808 kb on + strand, within MMP_RS02775
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Chlorite 1.25 mM remove 528,146 + MMP_RS02760 0.24 -0.5 528,153 + MMP_RS02760 0.25 -1.0 528,173 + MMP_RS02760 0.26 -0.1 528,208 - MMP_RS02760 0.29 -0.7 528,295 - MMP_RS02760 0.36 -1.0 528,301 - MMP_RS02760 0.36 -0.2 528,302 + MMP_RS02760 0.36 -0.4 528,302 + MMP_RS02760 0.36 +0.6 528,359 - MMP_RS02760 0.41 +1.0 528,401 - MMP_RS02760 0.44 +0.6 528,419 - MMP_RS02760 0.45 -0.0 528,420 + MMP_RS02760 0.45 -0.2 528,478 + MMP_RS02760 0.50 -1.3 528,481 - MMP_RS02760 0.50 +0.9 528,493 - MMP_RS02760 0.51 +0.2 528,625 - MMP_RS02760 0.61 -0.5 528,718 - MMP_RS02760 0.68 +0.4 528,759 + MMP_RS02760 0.71 +0.4 528,852 + MMP_RS02760 0.78 -1.4 528,921 + MMP_RS02760 0.83 -0.2 528,964 - MMP_RS02760 0.86 +0.1 529,143 + -2.1 529,225 - MMP_RS02765 0.11 -2.2 529,442 - MMP_RS02765 0.42 -1.8 529,560 - MMP_RS02765 0.59 +0.1 529,566 + MMP_RS02765 0.60 -0.8 529,578 - MMP_RS02765 0.61 -1.7 529,694 - MMP_RS02765 0.78 +1.0 529,850 - +1.0 529,946 + +0.3 529,972 + +0.7 530,014 - -0.1 530,014 - -0.4 530,042 - +1.1 530,102 + +0.3 530,104 - MMP_RS02770 0.10 +0.9 530,104 - MMP_RS02770 0.10 -0.2 530,104 - MMP_RS02770 0.10 +0.9 530,104 - MMP_RS02770 0.10 +0.1 530,434 + MMP_RS02770 0.68 +0.3 530,459 - MMP_RS02770 0.72 -0.3 530,543 + MMP_RS02770 0.86 -0.5 530,597 - -0.4 530,632 - +0.1 530,634 - +0.7 530,662 - +0.3 530,786 + MMP_RS02775 0.27 -0.4 530,807 - MMP_RS02775 0.32 -1.2 530,808 + MMP_RS02775 0.32 +0.6
Or see this region's nucleotide sequence