Experiment: McCas_H2_complete Chlorite 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01990 and MMP_RS01995 are separated by 39 nucleotides MMP_RS01995 and MMP_RS02000 are separated by 84 nucleotides MMP_RS02000 and MMP_RS02005 are separated by 464 nucleotides
MMP_RS01990: MMP_RS01990 - hypothetical protein, at 370,269 to 370,517
_RS01990
MMP_RS01995: MMP_RS01995 - ribonuclease VapC5, at 370,557 to 371,087
_RS01995
MMP_RS02000: MMP_RS02000 - radical SAM protein, at 371,172 to 372,545
_RS02000
MMP_RS02005: MMP_RS02005 - RNA ligase, at 373,010 to 374,194
_RS02005
Position (kb) 371
372
373 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 370.178 kb on - strand at 370.202 kb on + strand at 370.202 kb on + strand at 370.215 kb on - strand at 370.223 kb on - strand at 370.318 kb on - strand, within MMP_RS01990 at 370.318 kb on - strand, within MMP_RS01990 at 370.344 kb on + strand, within MMP_RS01990 at 370.382 kb on + strand, within MMP_RS01990 at 370.516 kb on + strand at 370.554 kb on - strand at 370.555 kb on + strand at 370.555 kb on + strand at 370.591 kb on - strand at 370.592 kb on + strand at 370.811 kb on - strand at 371.087 kb on - strand at 371.104 kb on - strand at 371.104 kb on - strand at 371.105 kb on + strand at 371.108 kb on - strand at 371.109 kb on + strand at 371.113 kb on + strand at 371.114 kb on - strand at 371.115 kb on + strand at 371.115 kb on + strand at 371.118 kb on - strand at 371.119 kb on + strand at 371.119 kb on + strand at 371.119 kb on + strand at 371.120 kb on - strand at 371.123 kb on - strand at 371.123 kb on - strand at 371.123 kb on - strand at 371.123 kb on - strand at 371.124 kb on + strand at 371.124 kb on + strand at 371.124 kb on + strand at 371.124 kb on + strand at 371.125 kb on - strand at 371.126 kb on + strand at 371.132 kb on + strand at 371.145 kb on + strand at 371.148 kb on - strand at 371.149 kb on + strand at 371.490 kb on - strand, within MMP_RS02000 at 371.494 kb on + strand, within MMP_RS02000 at 371.656 kb on + strand, within MMP_RS02000 at 371.760 kb on - strand, within MMP_RS02000 at 371.780 kb on + strand, within MMP_RS02000 at 371.995 kb on + strand, within MMP_RS02000 at 372.048 kb on - strand, within MMP_RS02000 at 372.232 kb on + strand, within MMP_RS02000 at 372.464 kb on + strand at 372.468 kb on + strand at 372.543 kb on - strand at 372.626 kb on + strand at 372.626 kb on + strand at 372.628 kb on - strand at 372.628 kb on - strand at 372.628 kb on - strand at 372.629 kb on + strand at 372.638 kb on - strand at 372.675 kb on - strand at 372.676 kb on + strand at 372.676 kb on + strand at 372.679 kb on - strand at 372.709 kb on - strand at 372.756 kb on + strand at 372.892 kb on - strand at 372.899 kb on + strand at 372.946 kb on - strand at 372.947 kb on + strand at 372.947 kb on + strand at 372.950 kb on - strand at 372.950 kb on - strand at 372.951 kb on + strand at 372.951 kb on + strand at 372.954 kb on - strand at 372.954 kb on - strand at 372.955 kb on + strand at 372.959 kb on - strand at 372.963 kb on - strand at 372.964 kb on + strand at 372.964 kb on + strand at 372.964 kb on + strand at 372.964 kb on + strand at 372.964 kb on + strand at 372.964 kb on + strand at 372.965 kb on - strand at 372.965 kb on - strand at 372.967 kb on - strand at 372.968 kb on + strand at 372.968 kb on + strand at 372.972 kb on + strand at 372.997 kb on + strand at 373.046 kb on + strand at 373.084 kb on - strand at 373.088 kb on - strand at 373.088 kb on - strand at 373.089 kb on + strand at 373.104 kb on - strand at 373.129 kb on - strand, within MMP_RS02005 at 373.155 kb on + strand, within MMP_RS02005 at 373.421 kb on + strand, within MMP_RS02005 at 373.421 kb on + strand, within MMP_RS02005 at 373.426 kb on - strand, within MMP_RS02005 at 373.427 kb on + strand, within MMP_RS02005 at 373.517 kb on - strand, within MMP_RS02005 at 373.535 kb on + strand, within MMP_RS02005
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Chlorite 1.25 mM remove 370,178 - +0.2 370,202 + -1.4 370,202 + -2.4 370,215 - -1.5 370,223 - +0.7 370,318 - MMP_RS01990 0.20 +1.1 370,318 - MMP_RS01990 0.20 -0.1 370,344 + MMP_RS01990 0.30 -0.1 370,382 + MMP_RS01990 0.45 -3.0 370,516 + -0.0 370,554 - -0.2 370,555 + -0.2 370,555 + -1.3 370,591 - +0.3 370,592 + +1.3 370,811 - +0.7 371,087 - -3.2 371,104 - -0.4 371,104 - +0.0 371,105 + -0.1 371,108 - -0.1 371,109 + -0.1 371,113 + +1.9 371,114 - +0.7 371,115 + +1.3 371,115 + +0.3 371,118 - -0.3 371,119 + +0.5 371,119 + +0.6 371,119 + -1.0 371,120 - +0.1 371,123 - -0.8 371,123 - -0.6 371,123 - +0.9 371,123 - +0.3 371,124 + -1.0 371,124 + +1.3 371,124 + -0.9 371,124 + +0.3 371,125 - +0.5 371,126 + -0.8 371,132 + +0.6 371,145 + +0.5 371,148 - -0.8 371,149 + -0.4 371,490 - MMP_RS02000 0.23 -0.9 371,494 + MMP_RS02000 0.23 -1.5 371,656 + MMP_RS02000 0.35 -0.4 371,760 - MMP_RS02000 0.43 -0.8 371,780 + MMP_RS02000 0.44 +0.5 371,995 + MMP_RS02000 0.60 +0.3 372,048 - MMP_RS02000 0.64 -1.3 372,232 + MMP_RS02000 0.77 -0.2 372,464 + +0.1 372,468 + +1.5 372,543 - +0.2 372,626 + +0.4 372,626 + -1.2 372,628 - +0.3 372,628 - +0.1 372,628 - +1.5 372,629 + +0.1 372,638 - -0.9 372,675 - -5.6 372,676 + +0.4 372,676 + -0.1 372,679 - +0.5 372,709 - +0.4 372,756 + +1.0 372,892 - -0.6 372,899 + +0.8 372,946 - +0.7 372,947 + +0.9 372,947 + -0.4 372,950 - +1.6 372,950 - -0.8 372,951 + +0.8 372,951 + +0.1 372,954 - +0.2 372,954 - +0.1 372,955 + +0.5 372,959 - +0.8 372,963 - +0.9 372,964 + +0.6 372,964 + -1.6 372,964 + -0.5 372,964 + -5.4 372,964 + +0.4 372,964 + -0.3 372,965 - -0.9 372,965 - -0.0 372,967 - -1.3 372,968 + +0.4 372,968 + -0.2 372,972 + +0.7 372,997 + +0.2 373,046 + +0.7 373,084 - -1.7 373,088 - +0.2 373,088 - -1.2 373,089 + -4.9 373,104 - +0.2 373,129 - MMP_RS02005 0.10 +0.3 373,155 + MMP_RS02005 0.12 +0.7 373,421 + MMP_RS02005 0.35 +0.1 373,421 + MMP_RS02005 0.35 -1.2 373,426 - MMP_RS02005 0.35 -0.3 373,427 + MMP_RS02005 0.35 +0.2 373,517 - MMP_RS02005 0.43 -0.8 373,535 + MMP_RS02005 0.44 +0.5
Or see this region's nucleotide sequence