Experiment: McCas_H2_complete Lithium chloride 250 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02700 and MMP_RS02705 are separated by 5 nucleotides MMP_RS02705 and MMP_RS02710 are separated by 118 nucleotides
MMP_RS02700: MMP_RS02700 - formylmethanofuran dehydrogenase subunit C, at 514,657 to 515,904
_RS02700
MMP_RS02705: MMP_RS02705 - formylmethanofuran dehydrogenase subunit B, at 515,910 to 517,241
_RS02705
MMP_RS02710: MMP_RS02710 - formylmethanofuran dehydrogenase subunit B, at 517,360 to 518,697
_RS02710
Position (kb) 515
516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 515.227 kb on - strand, within MMP_RS02700 at 515.285 kb on - strand, within MMP_RS02700 at 515.347 kb on - strand, within MMP_RS02700 at 515.348 kb on + strand, within MMP_RS02700 at 515.533 kb on + strand, within MMP_RS02700 at 515.590 kb on - strand, within MMP_RS02700 at 515.607 kb on + strand, within MMP_RS02700 at 515.625 kb on - strand, within MMP_RS02700 at 515.783 kb on - strand at 516.023 kb on - strand at 516.023 kb on - strand at 516.113 kb on + strand, within MMP_RS02705 at 516.213 kb on + strand, within MMP_RS02705 at 516.234 kb on - strand, within MMP_RS02705 at 516.234 kb on - strand, within MMP_RS02705 at 516.234 kb on - strand, within MMP_RS02705 at 516.466 kb on - strand, within MMP_RS02705 at 516.579 kb on + strand, within MMP_RS02705 at 516.644 kb on + strand, within MMP_RS02705 at 516.763 kb on + strand, within MMP_RS02705 at 516.879 kb on + strand, within MMP_RS02705 at 517.013 kb on + strand, within MMP_RS02705 at 517.067 kb on + strand, within MMP_RS02705 at 517.079 kb on + strand, within MMP_RS02705 at 517.100 kb on - strand, within MMP_RS02705 at 517.130 kb on + strand at 517.131 kb on - strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.132 kb on + strand at 517.134 kb on - strand at 517.134 kb on - strand at 517.134 kb on - strand at 517.135 kb on + strand at 517.210 kb on - strand at 517.239 kb on - strand at 517.282 kb on + strand at 517.337 kb on - strand at 517.338 kb on + strand at 517.378 kb on + strand at 517.385 kb on - strand at 517.385 kb on - strand at 517.385 kb on - strand at 517.386 kb on + strand at 517.386 kb on + strand at 517.388 kb on - strand at 517.389 kb on + strand at 517.389 kb on + strand at 517.389 kb on + strand at 517.433 kb on + strand at 517.433 kb on + strand at 517.433 kb on + strand at 517.453 kb on + strand at 517.506 kb on + strand, within MMP_RS02710 at 517.509 kb on - strand, within MMP_RS02710 at 517.518 kb on - strand, within MMP_RS02710 at 517.520 kb on - strand, within MMP_RS02710 at 517.541 kb on - strand, within MMP_RS02710 at 517.802 kb on - strand, within MMP_RS02710 at 517.803 kb on + strand, within MMP_RS02710 at 517.806 kb on - strand, within MMP_RS02710 at 517.859 kb on + strand, within MMP_RS02710 at 517.962 kb on + strand, within MMP_RS02710 at 517.973 kb on - strand, within MMP_RS02710 at 518.065 kb on + strand, within MMP_RS02710 at 518.205 kb on + strand, within MMP_RS02710
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Lithium chloride 250 mM remove 515,227 - MMP_RS02700 0.46 +0.1 515,285 - MMP_RS02700 0.50 +0.1 515,347 - MMP_RS02700 0.55 -0.3 515,348 + MMP_RS02700 0.55 -0.6 515,533 + MMP_RS02700 0.70 -2.2 515,590 - MMP_RS02700 0.75 +1.6 515,607 + MMP_RS02700 0.76 -0.3 515,625 - MMP_RS02700 0.78 -0.2 515,783 - +0.9 516,023 - +0.7 516,023 - -0.0 516,113 + MMP_RS02705 0.15 -0.2 516,213 + MMP_RS02705 0.23 +1.4 516,234 - MMP_RS02705 0.24 +2.4 516,234 - MMP_RS02705 0.24 +0.2 516,234 - MMP_RS02705 0.24 +0.2 516,466 - MMP_RS02705 0.42 +0.9 516,579 + MMP_RS02705 0.50 -0.7 516,644 + MMP_RS02705 0.55 +0.4 516,763 + MMP_RS02705 0.64 +1.2 516,879 + MMP_RS02705 0.73 +1.6 517,013 + MMP_RS02705 0.83 +1.5 517,067 + MMP_RS02705 0.87 +1.4 517,079 + MMP_RS02705 0.88 +0.1 517,100 - MMP_RS02705 0.89 -3.2 517,130 + -0.7 517,131 - +0.1 517,132 + +0.1 517,132 + +0.0 517,132 + +1.4 517,132 + -0.4 517,132 + -0.3 517,134 - +0.9 517,134 - +0.0 517,134 - -1.1 517,135 + -0.1 517,210 - +0.3 517,239 - +1.7 517,282 + +1.0 517,337 - +0.8 517,338 + +0.6 517,378 + +0.4 517,385 - +1.0 517,385 - +0.6 517,385 - +0.3 517,386 + -0.7 517,386 + -0.1 517,388 - -0.3 517,389 + +0.4 517,389 + +0.6 517,389 + -0.7 517,433 + +0.7 517,433 + -0.3 517,433 + +0.7 517,453 + -0.2 517,506 + MMP_RS02710 0.11 -0.8 517,509 - MMP_RS02710 0.11 +0.7 517,518 - MMP_RS02710 0.12 +1.6 517,520 - MMP_RS02710 0.12 -0.6 517,541 - MMP_RS02710 0.14 -0.2 517,802 - MMP_RS02710 0.33 +0.6 517,803 + MMP_RS02710 0.33 +0.5 517,806 - MMP_RS02710 0.33 +0.8 517,859 + MMP_RS02710 0.37 +0.8 517,962 + MMP_RS02710 0.45 -0.1 517,973 - MMP_RS02710 0.46 +0.1 518,065 + MMP_RS02710 0.53 +0.6 518,205 + MMP_RS02710 0.63 +1.4
Or see this region's nucleotide sequence