Experiment: McCas_H2_complete Phenazine methosulfate 0.0333333333333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04015 and MMP_RS04020 are separated by 11 nucleotides MMP_RS04020 and MMP_RS04025 are separated by 9 nucleotides MMP_RS04025 and MMP_RS04030 are separated by 126 nucleotides MMP_RS04030 and MMP_RS04035 are separated by 192 nucleotides
MMP_RS04015: MMP_RS04015 - hypothetical protein, at 762,446 to 762,937
_RS04015
MMP_RS04020: MMP_RS04020 - hypothetical protein, at 762,949 to 763,713
_RS04020
MMP_RS04025: MMP_RS04025 - ATPase AAA, at 763,723 to 765,075
_RS04025
MMP_RS04030: MMP_RS04030 - hypothetical protein, at 765,202 to 765,603
_RS04030
MMP_RS04035: MMP_RS04035 - hypothetical protein, at 765,796 to 766,236
_RS04035
Position (kb) 763
764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 762.751 kb on - strand, within MMP_RS04015 at 762.824 kb on + strand, within MMP_RS04015 at 762.824 kb on + strand, within MMP_RS04015 at 762.950 kb on - strand at 763.085 kb on - strand, within MMP_RS04020 at 763.184 kb on + strand, within MMP_RS04020 at 763.224 kb on + strand, within MMP_RS04020 at 763.276 kb on - strand, within MMP_RS04020 at 763.280 kb on + strand, within MMP_RS04020 at 763.282 kb on + strand, within MMP_RS04020 at 763.373 kb on + strand, within MMP_RS04020 at 763.490 kb on + strand, within MMP_RS04020 at 763.530 kb on + strand, within MMP_RS04020 at 763.688 kb on + strand at 763.725 kb on + strand at 763.792 kb on + strand at 763.876 kb on - strand, within MMP_RS04025 at 763.913 kb on + strand, within MMP_RS04025 at 763.976 kb on - strand, within MMP_RS04025 at 764.056 kb on + strand, within MMP_RS04025 at 764.086 kb on - strand, within MMP_RS04025 at 764.289 kb on - strand, within MMP_RS04025 at 764.407 kb on - strand, within MMP_RS04025 at 764.430 kb on - strand, within MMP_RS04025 at 764.442 kb on - strand, within MMP_RS04025 at 764.500 kb on - strand, within MMP_RS04025 at 764.500 kb on - strand, within MMP_RS04025 at 764.594 kb on + strand, within MMP_RS04025 at 764.611 kb on - strand, within MMP_RS04025 at 764.616 kb on - strand, within MMP_RS04025 at 764.616 kb on - strand, within MMP_RS04025 at 764.617 kb on + strand, within MMP_RS04025 at 764.617 kb on + strand, within MMP_RS04025 at 764.620 kb on + strand, within MMP_RS04025 at 764.620 kb on + strand, within MMP_RS04025 at 764.622 kb on + strand, within MMP_RS04025 at 764.641 kb on + strand, within MMP_RS04025 at 764.733 kb on + strand, within MMP_RS04025 at 764.766 kb on + strand, within MMP_RS04025 at 764.871 kb on - strand, within MMP_RS04025 at 764.962 kb on - strand at 764.972 kb on + strand at 764.974 kb on + strand at 764.974 kb on + strand at 765.081 kb on + strand at 765.131 kb on + strand at 765.140 kb on + strand at 765.199 kb on + strand at 765.258 kb on - strand, within MMP_RS04030 at 765.258 kb on - strand, within MMP_RS04030 at 765.258 kb on - strand, within MMP_RS04030 at 765.297 kb on - strand, within MMP_RS04030 at 765.392 kb on - strand, within MMP_RS04030 at 765.412 kb on - strand, within MMP_RS04030 at 765.434 kb on + strand, within MMP_RS04030 at 765.506 kb on - strand, within MMP_RS04030 at 765.507 kb on + strand, within MMP_RS04030 at 765.577 kb on - strand at 765.577 kb on - strand at 765.577 kb on - strand at 765.578 kb on + strand at 765.578 kb on + strand at 765.604 kb on + strand at 765.628 kb on + strand at 765.633 kb on + strand at 765.633 kb on + strand at 765.647 kb on - strand at 765.662 kb on - strand at 765.662 kb on - strand at 765.717 kb on - strand at 765.717 kb on - strand at 765.717 kb on - strand at 765.722 kb on + strand at 765.759 kb on + strand at 766.011 kb on + strand, within MMP_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction McCas_H2_complete Phenazine methosulfate 0.0333333333333333 mM remove 762,751 - MMP_RS04015 0.62 -1.6 762,824 + MMP_RS04015 0.77 -1.3 762,824 + MMP_RS04015 0.77 -0.0 762,950 - +1.4 763,085 - MMP_RS04020 0.18 -0.1 763,184 + MMP_RS04020 0.31 -0.3 763,224 + MMP_RS04020 0.36 -0.1 763,276 - MMP_RS04020 0.43 -0.4 763,280 + MMP_RS04020 0.43 +0.5 763,282 + MMP_RS04020 0.44 -1.1 763,373 + MMP_RS04020 0.55 -0.7 763,490 + MMP_RS04020 0.71 +0.4 763,530 + MMP_RS04020 0.76 +0.8 763,688 + -1.5 763,725 + -0.1 763,792 + +0.3 763,876 - MMP_RS04025 0.11 -0.3 763,913 + MMP_RS04025 0.14 -1.1 763,976 - MMP_RS04025 0.19 +0.8 764,056 + MMP_RS04025 0.25 +0.7 764,086 - MMP_RS04025 0.27 +0.2 764,289 - MMP_RS04025 0.42 +0.0 764,407 - MMP_RS04025 0.51 +0.8 764,430 - MMP_RS04025 0.52 -1.4 764,442 - MMP_RS04025 0.53 -0.6 764,500 - MMP_RS04025 0.57 -2.7 764,500 - MMP_RS04025 0.57 +0.7 764,594 + MMP_RS04025 0.64 -0.1 764,611 - MMP_RS04025 0.66 -1.6 764,616 - MMP_RS04025 0.66 -0.9 764,616 - MMP_RS04025 0.66 -0.7 764,617 + MMP_RS04025 0.66 +0.8 764,617 + MMP_RS04025 0.66 +0.6 764,620 + MMP_RS04025 0.66 -1.5 764,620 + MMP_RS04025 0.66 +0.4 764,622 + MMP_RS04025 0.66 +0.2 764,641 + MMP_RS04025 0.68 -0.9 764,733 + MMP_RS04025 0.75 +0.9 764,766 + MMP_RS04025 0.77 +0.5 764,871 - MMP_RS04025 0.85 -1.4 764,962 - +0.2 764,972 + -0.7 764,974 + +1.2 764,974 + +0.4 765,081 + +0.7 765,131 + -0.9 765,140 + -0.1 765,199 + +1.2 765,258 - MMP_RS04030 0.14 +0.6 765,258 - MMP_RS04030 0.14 +0.2 765,258 - MMP_RS04030 0.14 -0.0 765,297 - MMP_RS04030 0.24 +0.6 765,392 - MMP_RS04030 0.47 -0.6 765,412 - MMP_RS04030 0.52 +0.3 765,434 + MMP_RS04030 0.58 +0.9 765,506 - MMP_RS04030 0.76 -0.8 765,507 + MMP_RS04030 0.76 +0.4 765,577 - +0.3 765,577 - -1.5 765,577 - -0.2 765,578 + +0.0 765,578 + -0.4 765,604 + -0.5 765,628 + +0.3 765,633 + -1.3 765,633 + -0.5 765,647 - +1.1 765,662 - +0.5 765,662 - -1.5 765,717 - +0.8 765,717 - +1.0 765,717 - +0.7 765,722 + -1.1 765,759 + +0.8 766,011 + MMP_RS04035 0.49 +0.1
Or see this region's nucleotide sequence