Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt oppF and oppD are separated by 10 nucleotides oppD and oppC are separated by 2 nucleotides oppC and DVU0168 are separated by 1 nucleotides
DVU0165: oppF - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 205,350 to 206,363
oppF
DVU0166: oppD - oligopeptide/dipeptide ABC transporter, ATP-binding protein (TIGR), at 206,374 to 207,360
oppD
DVU0167: oppC - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 207,363 to 208,283
oppC
DVU0168: DVU0168 - oligopeptide/dipeptide ABC transporter, permease protein (TIGR), at 208,285 to 209,262
DVU0168
Position (kb) 207
208
209 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 206.402 kb on - strand at 206.425 kb on - strand at 206.446 kb on - strand at 206.450 kb on + strand at 206.498 kb on + strand, within oppD at 206.498 kb on + strand, within oppD at 206.553 kb on - strand, within oppD at 206.560 kb on + strand, within oppD at 206.560 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.609 kb on + strand, within oppD at 206.617 kb on - strand, within oppD at 206.630 kb on + strand, within oppD at 206.638 kb on - strand, within oppD at 206.653 kb on + strand, within oppD at 206.653 kb on - strand, within oppD at 206.741 kb on - strand, within oppD at 206.742 kb on - strand, within oppD at 206.761 kb on - strand, within oppD at 206.811 kb on - strand, within oppD at 206.846 kb on + strand, within oppD at 206.851 kb on + strand, within oppD at 206.856 kb on + strand, within oppD at 206.856 kb on - strand, within oppD at 206.864 kb on - strand, within oppD at 206.907 kb on - strand, within oppD at 206.913 kb on + strand, within oppD at 206.930 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.938 kb on + strand, within oppD at 206.946 kb on - strand, within oppD at 206.993 kb on + strand, within oppD at 207.156 kb on - strand, within oppD at 207.156 kb on - strand, within oppD at 207.192 kb on + strand, within oppD at 207.228 kb on + strand, within oppD at 207.377 kb on + strand at 207.416 kb on + strand at 207.424 kb on - strand at 207.424 kb on - strand at 207.502 kb on + strand, within oppC at 207.719 kb on + strand, within oppC at 207.745 kb on + strand, within oppC at 208.020 kb on - strand, within oppC at 208.186 kb on + strand, within oppC at 208.272 kb on - strand at 208.438 kb on + strand, within DVU0168 at 208.498 kb on + strand, within DVU0168 at 208.501 kb on - strand, within DVU0168 at 208.546 kb on + strand, within DVU0168 at 208.630 kb on - strand, within DVU0168 at 208.639 kb on + strand, within DVU0168 at 208.718 kb on + strand, within DVU0168 at 208.757 kb on + strand, within DVU0168 at 208.889 kb on + strand, within DVU0168 at 208.915 kb on - strand, within DVU0168 at 209.050 kb on - strand, within DVU0168 at 209.068 kb on + strand, within DVU0168 at 209.125 kb on - strand, within DVU0168 at 209.135 kb on - strand, within DVU0168 at 209.135 kb on - strand, within DVU0168 at 209.232 kb on + strand at 209.240 kb on - strand at 209.253 kb on + strand at 209.283 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05% remove 206,402 - -0.8 206,425 - +0.6 206,446 - -0.2 206,450 + -0.3 206,498 + oppD DVU0166 0.13 -1.0 206,498 + oppD DVU0166 0.13 -0.3 206,553 - oppD DVU0166 0.18 -0.1 206,560 + oppD DVU0166 0.19 -0.2 206,560 + oppD DVU0166 0.19 -0.7 206,609 + oppD DVU0166 0.24 -0.6 206,609 + oppD DVU0166 0.24 -0.5 206,609 + oppD DVU0166 0.24 -0.9 206,609 + oppD DVU0166 0.24 -0.6 206,617 - oppD DVU0166 0.25 +0.7 206,630 + oppD DVU0166 0.26 -0.3 206,638 - oppD DVU0166 0.27 +0.9 206,653 + oppD DVU0166 0.28 +1.3 206,653 - oppD DVU0166 0.28 +0.4 206,741 - oppD DVU0166 0.37 -0.6 206,742 - oppD DVU0166 0.37 +1.1 206,761 - oppD DVU0166 0.39 -0.4 206,811 - oppD DVU0166 0.44 -0.1 206,846 + oppD DVU0166 0.48 -0.4 206,851 + oppD DVU0166 0.48 -0.5 206,856 + oppD DVU0166 0.49 -1.4 206,856 - oppD DVU0166 0.49 -0.1 206,864 - oppD DVU0166 0.50 -0.7 206,907 - oppD DVU0166 0.54 +0.2 206,913 + oppD DVU0166 0.55 -0.3 206,930 + oppD DVU0166 0.56 +0.0 206,938 + oppD DVU0166 0.57 +3.5 206,938 + oppD DVU0166 0.57 -0.1 206,938 + oppD DVU0166 0.57 +0.9 206,938 + oppD DVU0166 0.57 +0.1 206,946 - oppD DVU0166 0.58 +0.0 206,993 + oppD DVU0166 0.63 +0.4 207,156 - oppD DVU0166 0.79 +0.1 207,156 - oppD DVU0166 0.79 +0.7 207,192 + oppD DVU0166 0.83 -0.7 207,228 + oppD DVU0166 0.87 +2.5 207,377 + -0.3 207,416 + +0.2 207,424 - +0.2 207,424 - -0.1 207,502 + oppC DVU0167 0.15 -0.5 207,719 + oppC DVU0167 0.39 +0.6 207,745 + oppC DVU0167 0.41 +0.2 208,020 - oppC DVU0167 0.71 +2.0 208,186 + oppC DVU0167 0.89 -0.1 208,272 - -0.8 208,438 + DVU0168 0.16 +2.0 208,498 + DVU0168 0.22 +0.7 208,501 - DVU0168 0.22 -0.3 208,546 + DVU0168 0.27 -0.1 208,630 - DVU0168 0.35 -0.3 208,639 + DVU0168 0.36 +1.9 208,718 + DVU0168 0.44 -0.1 208,757 + DVU0168 0.48 +0.2 208,889 + DVU0168 0.62 +0.6 208,915 - DVU0168 0.64 -0.6 209,050 - DVU0168 0.78 -0.6 209,068 + DVU0168 0.80 +0.1 209,125 - DVU0168 0.86 -0.2 209,135 - DVU0168 0.87 -1.8 209,135 - DVU0168 0.87 -0.2 209,232 + -0.6 209,240 - +0.4 209,253 + -0.5 209,283 - +0.8
Or see this region's nucleotide sequence