Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pomB and pomA are separated by 3 nucleotides pomA and DVU0641 are separated by 0 nucleotides DVU0641 and DVU0642 are separated by 399 nucleotides
DVU0639: pomB - chemotaxis protein PomB (TIGR), at 709,562 to 710,335
pomB
DVU0640: pomA - chemotaxis protein PomA (TIGR), at 710,339 to 711,091
pomA
DVU0641: DVU0641 - conserved hypothetical protein (TIGR), at 711,092 to 712,240
DVU0641
DVU0642: DVU0642 - hydrolase, alpha/beta fold family (TIGR), at 712,640 to 713,452
DVU0642
Position (kb) 711
712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 710.134 kb on + strand, within pomB at 710.191 kb on - strand, within pomB at 710.197 kb on - strand, within pomB at 710.225 kb on - strand, within pomB at 710.372 kb on + strand at 710.380 kb on - strand at 710.409 kb on + strand at 710.411 kb on + strand at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.444 kb on - strand, within pomA at 710.602 kb on + strand, within pomA at 710.651 kb on + strand, within pomA at 710.678 kb on - strand, within pomA at 710.682 kb on - strand, within pomA at 710.725 kb on - strand, within pomA at 710.732 kb on - strand, within pomA at 710.766 kb on - strand, within pomA at 710.771 kb on - strand, within pomA at 710.869 kb on + strand, within pomA at 710.872 kb on - strand, within pomA at 710.882 kb on - strand, within pomA at 710.914 kb on + strand, within pomA at 710.919 kb on + strand, within pomA at 710.922 kb on - strand, within pomA at 711.222 kb on - strand, within DVU0641 at 711.347 kb on - strand, within DVU0641 at 711.377 kb on - strand, within DVU0641 at 711.410 kb on - strand, within DVU0641 at 711.432 kb on - strand, within DVU0641 at 711.432 kb on - strand, within DVU0641 at 711.432 kb on - strand, within DVU0641 at 711.452 kb on - strand, within DVU0641 at 711.465 kb on - strand, within DVU0641 at 711.519 kb on - strand, within DVU0641 at 711.607 kb on - strand, within DVU0641 at 711.756 kb on + strand, within DVU0641 at 711.997 kb on + strand, within DVU0641 at 712.005 kb on - strand, within DVU0641 at 712.048 kb on - strand, within DVU0641 at 712.120 kb on + strand, within DVU0641 at 712.120 kb on + strand, within DVU0641 at 712.128 kb on - strand at 712.150 kb on + strand at 712.158 kb on - strand at 712.170 kb on + strand at 712.497 kb on - strand at 712.505 kb on + strand at 712.547 kb on + strand at 712.693 kb on + strand at 712.693 kb on + strand at 712.701 kb on - strand at 712.701 kb on - strand at 712.741 kb on + strand, within DVU0642 at 712.749 kb on - strand, within DVU0642 at 712.760 kb on + strand, within DVU0642 at 712.844 kb on + strand, within DVU0642 at 712.982 kb on + strand, within DVU0642 at 713.052 kb on - strand, within DVU0642 at 713.147 kb on - strand, within DVU0642 at 713.207 kb on + strand, within DVU0642
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05% remove 710,134 + pomB DVU0639 0.74 -1.1 710,191 - pomB DVU0639 0.81 -1.5 710,197 - pomB DVU0639 0.82 -1.0 710,225 - pomB DVU0639 0.86 -1.4 710,372 + -1.6 710,380 - -0.9 710,409 + +0.7 710,411 + -1.4 710,444 - pomA DVU0640 0.14 +2.4 710,444 - pomA DVU0640 0.14 +0.8 710,444 - pomA DVU0640 0.14 +0.8 710,602 + pomA DVU0640 0.35 -0.7 710,651 + pomA DVU0640 0.41 +0.8 710,678 - pomA DVU0640 0.45 -1.6 710,682 - pomA DVU0640 0.46 -1.2 710,725 - pomA DVU0640 0.51 -0.9 710,732 - pomA DVU0640 0.52 -1.0 710,766 - pomA DVU0640 0.57 +0.4 710,771 - pomA DVU0640 0.57 +1.8 710,869 + pomA DVU0640 0.70 +1.4 710,872 - pomA DVU0640 0.71 -1.5 710,882 - pomA DVU0640 0.72 -1.4 710,914 + pomA DVU0640 0.76 +0.9 710,919 + pomA DVU0640 0.77 -0.6 710,922 - pomA DVU0640 0.77 +1.9 711,222 - DVU0641 0.11 +0.5 711,347 - DVU0641 0.22 -3.0 711,377 - DVU0641 0.25 -1.1 711,410 - DVU0641 0.28 +3.2 711,432 - DVU0641 0.30 +0.2 711,432 - DVU0641 0.30 -1.2 711,432 - DVU0641 0.30 -0.9 711,452 - DVU0641 0.31 -0.4 711,465 - DVU0641 0.32 +1.4 711,519 - DVU0641 0.37 -0.6 711,607 - DVU0641 0.45 +1.0 711,756 + DVU0641 0.58 -1.8 711,997 + DVU0641 0.79 -2.0 712,005 - DVU0641 0.79 -2.5 712,048 - DVU0641 0.83 -0.3 712,120 + DVU0641 0.89 -0.4 712,120 + DVU0641 0.89 -2.0 712,128 - -0.9 712,150 + -1.0 712,158 - -2.1 712,170 + -2.3 712,497 - -1.2 712,505 + +0.1 712,547 + -0.1 712,693 + +4.8 712,693 + +2.8 712,701 - -0.1 712,701 - -1.9 712,741 + DVU0642 0.12 +3.2 712,749 - DVU0642 0.13 -1.2 712,760 + DVU0642 0.15 -1.7 712,844 + DVU0642 0.25 +0.7 712,982 + DVU0642 0.42 -1.2 713,052 - DVU0642 0.51 -1.6 713,147 - DVU0642 0.62 -2.0 713,207 + DVU0642 0.70 +2.4
Or see this region's nucleotide sequence