Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0446 and DVU0447 overlap by 8 nucleotides DVU0447 and gmd are separated by 393 nucleotides gmd and DVU0449 overlap by 13 nucleotides
DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589
DVU0446
DVU0447: DVU0447 - membrane protein, putative (TIGR), at 507,582 to 507,899
DVU0447
DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438
gmd
DVU0449: DVU0449 - sensor/response regulator (TIGR), at 509,426 to 513,967
DVU0449
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 507.330 kb on + strand, within DVU0446 at 507.415 kb on + strand, within DVU0446 at 507.446 kb on + strand at 507.451 kb on - strand at 507.477 kb on + strand at 507.535 kb on - strand at 507.560 kb on - strand at 507.560 kb on - strand at 507.562 kb on + strand at 507.562 kb on + strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.570 kb on - strand at 507.607 kb on - strand at 507.685 kb on + strand, within DVU0447 at 507.719 kb on + strand, within DVU0447 at 507.782 kb on + strand, within DVU0447 at 507.800 kb on + strand, within DVU0447 at 507.811 kb on + strand, within DVU0447 at 507.819 kb on - strand, within DVU0447 at 507.863 kb on - strand, within DVU0447 at 507.898 kb on - strand at 507.907 kb on + strand at 507.915 kb on - strand at 507.917 kb on - strand at 507.998 kb on - strand at 507.998 kb on - strand at 508.016 kb on + strand at 508.024 kb on - strand at 508.024 kb on - strand at 508.048 kb on - strand at 508.053 kb on - strand at 508.080 kb on + strand at 508.088 kb on - strand at 508.374 kb on - strand at 508.536 kb on + strand, within gmd at 508.544 kb on - strand, within gmd at 508.651 kb on + strand, within gmd at 508.826 kb on - strand, within gmd at 508.866 kb on + strand, within gmd at 508.957 kb on - strand, within gmd at 508.959 kb on + strand, within gmd at 509.062 kb on - strand, within gmd at 509.474 kb on + strand at 509.503 kb on - strand at 509.508 kb on - strand at 509.615 kb on - strand at 509.619 kb on + strand at 509.705 kb on + strand at 509.793 kb on - strand at 509.836 kb on + strand at 509.844 kb on - strand at 509.844 kb on - strand at 509.865 kb on + strand at 509.873 kb on - strand at 509.882 kb on - strand, within DVU0449 at 509.961 kb on - strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.114 kb on + strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.127 kb on - strand, within DVU0449 at 510.143 kb on + strand, within DVU0449 at 510.176 kb on + strand, within DVU0449 at 510.184 kb on - strand, within DVU0449 at 510.218 kb on - strand, within DVU0449 at 510.220 kb on - strand, within DVU0449 at 510.240 kb on + strand, within DVU0449 at 510.265 kb on - strand, within DVU0449 at 510.344 kb on - strand, within DVU0449 at 510.349 kb on + strand, within DVU0449 at 510.359 kb on + strand, within DVU0449 at 510.370 kb on - strand, within DVU0449 at 510.417 kb on + strand, within DVU0449
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05% remove 507,330 + DVU0446 0.83 +1.2 507,415 + DVU0446 0.89 -1.5 507,446 + -0.6 507,451 - +1.4 507,477 + +0.3 507,535 - +1.1 507,560 - +3.4 507,560 - -0.5 507,562 + -1.0 507,562 + -1.5 507,570 - -0.6 507,570 - -2.4 507,570 - +0.4 507,607 - -1.5 507,685 + DVU0447 0.32 -3.5 507,719 + DVU0447 0.43 +0.9 507,782 + DVU0447 0.63 +0.7 507,800 + DVU0447 0.69 -1.6 507,811 + DVU0447 0.72 +1.4 507,819 - DVU0447 0.75 +1.1 507,863 - DVU0447 0.88 -2.5 507,898 - -1.5 507,907 + +0.5 507,915 - +3.1 507,917 - +0.6 507,998 - -1.6 507,998 - -1.4 508,016 + +2.1 508,024 - -1.1 508,024 - -1.2 508,048 - -0.6 508,053 - +1.9 508,080 + -1.1 508,088 - -1.1 508,374 - +4.7 508,536 + gmd DVU0448 0.21 +3.1 508,544 - gmd DVU0448 0.22 +4.7 508,651 + gmd DVU0448 0.31 +1.5 508,826 - gmd DVU0448 0.47 +2.7 508,866 + gmd DVU0448 0.50 +4.7 508,957 - gmd DVU0448 0.58 +1.5 508,959 + gmd DVU0448 0.58 +2.7 509,062 - gmd DVU0448 0.67 +4.7 509,474 + +0.4 509,503 - -1.3 509,508 - +0.9 509,615 - -1.8 509,619 + -1.0 509,705 + +0.4 509,793 - -0.9 509,836 + -1.3 509,844 - -0.7 509,844 - -1.5 509,865 + -1.4 509,873 - +3.7 509,882 - DVU0449 0.10 -0.8 509,961 - DVU0449 0.12 -0.3 510,114 + DVU0449 0.15 +1.5 510,114 + DVU0449 0.15 +0.4 510,114 + DVU0449 0.15 +1.7 510,127 - DVU0449 0.15 -0.5 510,127 - DVU0449 0.15 -0.9 510,127 - DVU0449 0.15 -3.2 510,127 - DVU0449 0.15 -1.5 510,143 + DVU0449 0.16 +2.4 510,176 + DVU0449 0.17 +0.7 510,184 - DVU0449 0.17 +2.4 510,218 - DVU0449 0.17 -1.6 510,220 - DVU0449 0.17 -2.5 510,240 + DVU0449 0.18 -1.0 510,265 - DVU0449 0.18 -0.2 510,344 - DVU0449 0.20 +1.1 510,349 + DVU0449 0.20 -0.7 510,359 + DVU0449 0.21 +0.8 510,370 - DVU0449 0.21 -0.4 510,417 + DVU0449 0.22 -1.5
Or see this region's nucleotide sequence