Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glcD and DVU0391 are separated by 60 nucleotides DVU0391 and DVU0392 are separated by 254 nucleotides
DVU0390: glcD - glycolate oxidase, subunit GlcD, putative (TIGR), at 437,672 to 439,054
glcD
DVU0391: DVU0391 - hypothetical protein (TIGR), at 439,115 to 440,056
DVU0391
DVU0392: DVU0392 - aromatic aminotransferase (TIGR), at 440,311 to 441,510
DVU0392
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 438.244 kb on + strand, within glcD at 438.253 kb on - strand, within glcD at 438.270 kb on - strand, within glcD at 438.288 kb on - strand, within glcD at 438.295 kb on - strand, within glcD at 438.317 kb on - strand, within glcD at 438.336 kb on - strand, within glcD at 438.343 kb on + strand, within glcD at 438.350 kb on + strand, within glcD at 438.350 kb on + strand, within glcD at 438.351 kb on - strand, within glcD at 438.357 kb on - strand, within glcD at 438.358 kb on - strand, within glcD at 438.395 kb on + strand, within glcD at 438.440 kb on + strand, within glcD at 438.450 kb on + strand, within glcD at 438.598 kb on + strand, within glcD at 438.598 kb on + strand, within glcD at 438.634 kb on + strand, within glcD at 438.642 kb on - strand, within glcD at 438.660 kb on + strand, within glcD at 438.691 kb on - strand, within glcD at 438.691 kb on - strand, within glcD at 438.837 kb on + strand, within glcD at 438.869 kb on + strand, within glcD at 438.912 kb on + strand, within glcD at 438.935 kb on - strand at 438.984 kb on - strand at 438.996 kb on - strand at 439.043 kb on + strand at 439.043 kb on + strand at 439.050 kb on - strand at 439.070 kb on - strand at 439.070 kb on - strand at 439.070 kb on - strand at 439.074 kb on + strand at 439.074 kb on + strand at 439.217 kb on - strand, within DVU0391 at 439.285 kb on + strand, within DVU0391 at 439.359 kb on - strand, within DVU0391 at 439.363 kb on + strand, within DVU0391 at 439.399 kb on + strand, within DVU0391 at 439.404 kb on + strand, within DVU0391 at 439.449 kb on - strand, within DVU0391 at 439.479 kb on + strand, within DVU0391 at 439.479 kb on + strand, within DVU0391 at 439.530 kb on - strand, within DVU0391 at 439.549 kb on + strand, within DVU0391 at 439.665 kb on - strand, within DVU0391 at 439.665 kb on - strand, within DVU0391 at 439.673 kb on + strand, within DVU0391 at 439.806 kb on + strand, within DVU0391 at 439.855 kb on + strand, within DVU0391 at 439.857 kb on - strand, within DVU0391 at 440.024 kb on - strand at 440.030 kb on - strand at 440.066 kb on + strand at 440.093 kb on - strand at 440.105 kb on + strand at 440.133 kb on - strand at 440.303 kb on + strand at 440.339 kb on + strand at 440.417 kb on + strand at 440.421 kb on + strand at 440.443 kb on + strand, within DVU0392 at 440.451 kb on - strand, within DVU0392 at 440.451 kb on - strand, within DVU0392 at 440.489 kb on - strand, within DVU0392 at 440.499 kb on + strand, within DVU0392 at 440.499 kb on + strand, within DVU0392 at 440.507 kb on - strand, within DVU0392 at 440.507 kb on - strand, within DVU0392 at 440.507 kb on - strand, within DVU0392 at 440.507 kb on - strand, within DVU0392 at 440.507 kb on - strand, within DVU0392 at 440.530 kb on - strand, within DVU0392 at 440.568 kb on + strand, within DVU0392 at 440.647 kb on + strand, within DVU0392 at 440.851 kb on + strand, within DVU0392 at 440.851 kb on + strand, within DVU0392 at 440.859 kb on - strand, within DVU0392 at 440.859 kb on - strand, within DVU0392 at 440.913 kb on + strand, within DVU0392 at 440.959 kb on + strand, within DVU0392 at 440.967 kb on - strand, within DVU0392
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05% remove 438,244 + glcD DVU0390 0.41 -1.6 438,253 - glcD DVU0390 0.42 +4.6 438,270 - glcD DVU0390 0.43 -2.4 438,288 - glcD DVU0390 0.45 -1.4 438,295 - glcD DVU0390 0.45 -1.7 438,317 - glcD DVU0390 0.47 -1.3 438,336 - glcD DVU0390 0.48 -0.0 438,343 + glcD DVU0390 0.49 -0.9 438,350 + glcD DVU0390 0.49 -1.5 438,350 + glcD DVU0390 0.49 -1.6 438,351 - glcD DVU0390 0.49 +1.3 438,357 - glcD DVU0390 0.50 -3.2 438,358 - glcD DVU0390 0.50 +3.6 438,395 + glcD DVU0390 0.52 -1.1 438,440 + glcD DVU0390 0.56 +4.6 438,450 + glcD DVU0390 0.56 -1.4 438,598 + glcD DVU0390 0.67 -0.9 438,598 + glcD DVU0390 0.67 -1.2 438,634 + glcD DVU0390 0.70 -2.6 438,642 - glcD DVU0390 0.70 +0.0 438,660 + glcD DVU0390 0.71 -1.7 438,691 - glcD DVU0390 0.74 -0.6 438,691 - glcD DVU0390 0.74 -0.7 438,837 + glcD DVU0390 0.84 +0.7 438,869 + glcD DVU0390 0.87 -0.4 438,912 + glcD DVU0390 0.90 +3.6 438,935 - +1.8 438,984 - +1.5 438,996 - +0.7 439,043 + +0.9 439,043 + +1.6 439,050 - +2.1 439,070 - +3.6 439,070 - +1.8 439,070 - -1.4 439,074 + -0.3 439,074 + +0.9 439,217 - DVU0391 0.11 -0.8 439,285 + DVU0391 0.18 +3.1 439,359 - DVU0391 0.26 -1.9 439,363 + DVU0391 0.26 -2.2 439,399 + DVU0391 0.30 -0.9 439,404 + DVU0391 0.31 +0.6 439,449 - DVU0391 0.35 -2.3 439,479 + DVU0391 0.39 +1.3 439,479 + DVU0391 0.39 +0.6 439,530 - DVU0391 0.44 +1.5 439,549 + DVU0391 0.46 +2.3 439,665 - DVU0391 0.58 +1.4 439,665 - DVU0391 0.58 +0.6 439,673 + DVU0391 0.59 -1.0 439,806 + DVU0391 0.73 -2.2 439,855 + DVU0391 0.79 -0.4 439,857 - DVU0391 0.79 -1.4 440,024 - -1.1 440,030 - -1.2 440,066 + +1.6 440,093 - -0.3 440,105 + -0.4 440,133 - +0.6 440,303 + +3.6 440,339 + -1.8 440,417 + +1.3 440,421 + -0.9 440,443 + DVU0392 0.11 +2.6 440,451 - DVU0392 0.12 -0.4 440,451 - DVU0392 0.12 +0.5 440,489 - DVU0392 0.15 +0.5 440,499 + DVU0392 0.16 -0.5 440,499 + DVU0392 0.16 +1.3 440,507 - DVU0392 0.16 +1.8 440,507 - DVU0392 0.16 -2.0 440,507 - DVU0392 0.16 -1.4 440,507 - DVU0392 0.16 +1.1 440,507 - DVU0392 0.16 -2.0 440,530 - DVU0392 0.18 +1.3 440,568 + DVU0392 0.21 +0.7 440,647 + DVU0392 0.28 +2.1 440,851 + DVU0392 0.45 -0.7 440,851 + DVU0392 0.45 -0.6 440,859 - DVU0392 0.46 -2.1 440,859 - DVU0392 0.46 +1.3 440,913 + DVU0392 0.50 -1.2 440,959 + DVU0392 0.54 -1.5 440,967 - DVU0392 0.55 -1.5
Or see this region's nucleotide sequence