Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0382

Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnhaC-1 and DVU0382 are separated by 81 nucleotidesDVU0382 and DVU0383 are separated by 180 nucleotidesDVU0383 and flr are separated by 358 nucleotides DVU0381: nhaC-1 - Na+/H+ antiporter NhaC (TIGR), at 431,111 to 432,502 nhaC-1 DVU0382: DVU0382 - hypothetical protein (TIGR), at 432,584 to 432,883 DVU0382 DVU0383: DVU0383 - hypothetical protein (TIGR), at 433,064 to 433,453 DVU0383 DVU0384: flr - flavoredoxin (TIGR), at 433,812 to 434,384 flr Position (kb) 432 433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 431.607 kb on + strand, within nhaC-1at 431.645 kb on - strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.670 kb on + strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.678 kb on - strand, within nhaC-1at 431.769 kb on - strand, within nhaC-1at 431.795 kb on + strand, within nhaC-1at 431.813 kb on + strand, within nhaC-1at 431.821 kb on - strand, within nhaC-1at 431.821 kb on - strand, within nhaC-1at 431.823 kb on + strand, within nhaC-1at 431.831 kb on - strand, within nhaC-1at 431.831 kb on - strand, within nhaC-1at 431.867 kb on + strand, within nhaC-1at 431.906 kb on + strand, within nhaC-1at 431.911 kb on + strand, within nhaC-1at 431.911 kb on + strand, within nhaC-1at 431.916 kb on + strand, within nhaC-1at 431.924 kb on - strand, within nhaC-1at 431.928 kb on + strand, within nhaC-1at 431.928 kb on + strand, within nhaC-1at 431.984 kb on + strand, within nhaC-1at 432.053 kb on + strand, within nhaC-1at 432.053 kb on + strand, within nhaC-1at 432.061 kb on - strand, within nhaC-1at 432.061 kb on - strand, within nhaC-1at 432.083 kb on - strand, within nhaC-1at 432.088 kb on - strand, within nhaC-1at 432.096 kb on + strand, within nhaC-1at 432.152 kb on - strand, within nhaC-1at 432.183 kb on - strand, within nhaC-1at 432.206 kb on - strand, within nhaC-1at 432.305 kb on + strand, within nhaC-1at 432.337 kb on + strand, within nhaC-1at 432.340 kb on - strand, within nhaC-1at 432.389 kb on - strandat 432.463 kb on - strandat 432.660 kb on + strand, within DVU0382at 432.713 kb on + strand, within DVU0382at 432.715 kb on + strand, within DVU0382at 432.955 kb on - strandat 432.960 kb on + strandat 432.968 kb on - strandat 432.994 kb on - strandat 432.996 kb on - strandat 433.077 kb on + strandat 433.079 kb on + strandat 433.102 kb on + strandat 433.129 kb on - strand, within DVU0383at 433.152 kb on - strand, within DVU0383at 433.224 kb on - strand, within DVU0383at 433.235 kb on + strand, within DVU0383at 433.235 kb on + strand, within DVU0383at 433.240 kb on + strand, within DVU0383at 433.245 kb on + strand, within DVU0383at 433.248 kb on - strand, within DVU0383at 433.248 kb on - strand, within DVU0383at 433.253 kb on - strand, within DVU0383at 433.307 kb on + strand, within DVU0383at 433.315 kb on - strand, within DVU0383at 433.317 kb on + strand, within DVU0383at 433.332 kb on + strand, within DVU0383at 433.351 kb on - strand, within DVU0383at 433.376 kb on - strand, within DVU0383at 433.388 kb on - strand, within DVU0383at 433.403 kb on - strand, within DVU0383at 433.446 kb on + strandat 433.446 kb on + strandat 433.489 kb on + strandat 433.513 kb on - strandat 433.537 kb on + strandat 433.634 kb on - strandat 433.644 kb on + strandat 433.656 kb on - strandat 433.656 kb on - strandat 433.741 kb on + strandat 433.741 kb on + strandat 433.766 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
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431,607 + nhaC-1 DVU0381 0.36 -1.1
431,645 - nhaC-1 DVU0381 0.38 +4.6
431,670 + nhaC-1 DVU0381 0.40 -0.3
431,670 + nhaC-1 DVU0381 0.40 -0.2
431,670 + nhaC-1 DVU0381 0.40 -0.9
431,678 - nhaC-1 DVU0381 0.41 -1.0
431,678 - nhaC-1 DVU0381 0.41 -1.9
431,678 - nhaC-1 DVU0381 0.41 +0.2
431,678 - nhaC-1 DVU0381 0.41 -1.4
431,769 - nhaC-1 DVU0381 0.47 -2.2
431,795 + nhaC-1 DVU0381 0.49 -0.2
431,813 + nhaC-1 DVU0381 0.50 +2.6
431,821 - nhaC-1 DVU0381 0.51 -0.4
431,821 - nhaC-1 DVU0381 0.51 +2.1
431,823 + nhaC-1 DVU0381 0.51 -1.0
431,831 - nhaC-1 DVU0381 0.52 -0.3
431,831 - nhaC-1 DVU0381 0.52 +2.3
431,867 + nhaC-1 DVU0381 0.54 -0.9
431,906 + nhaC-1 DVU0381 0.57 -0.2
431,911 + nhaC-1 DVU0381 0.57 +1.2
431,911 + nhaC-1 DVU0381 0.57 +1.5
431,916 + nhaC-1 DVU0381 0.58 -3.9
431,924 - nhaC-1 DVU0381 0.58 +2.6
431,928 + nhaC-1 DVU0381 0.59 +0.4
431,928 + nhaC-1 DVU0381 0.59 +1.6
431,984 + nhaC-1 DVU0381 0.63 -1.1
432,053 + nhaC-1 DVU0381 0.68 +0.9
432,053 + nhaC-1 DVU0381 0.68 -1.2
432,061 - nhaC-1 DVU0381 0.68 +1.6
432,061 - nhaC-1 DVU0381 0.68 +0.7
432,083 - nhaC-1 DVU0381 0.70 -0.7
432,088 - nhaC-1 DVU0381 0.70 -0.8
432,096 + nhaC-1 DVU0381 0.71 -1.8
432,152 - nhaC-1 DVU0381 0.75 +0.4
432,183 - nhaC-1 DVU0381 0.77 -0.3
432,206 - nhaC-1 DVU0381 0.79 -3.1
432,305 + nhaC-1 DVU0381 0.86 +0.7
432,337 + nhaC-1 DVU0381 0.88 -1.5
432,340 - nhaC-1 DVU0381 0.88 -0.5
432,389 - -1.4
432,463 - -1.9
432,660 + DVU0382 0.25 -1.8
432,713 + DVU0382 0.43 +0.4
432,715 + DVU0382 0.44 -0.5
432,955 - -1.9
432,960 + -1.5
432,968 - -1.1
432,994 - +0.7
432,996 - -2.1
433,077 + -0.2
433,079 + -0.7
433,102 + -1.1
433,129 - DVU0383 0.17 +1.1
433,152 - DVU0383 0.23 -2.2
433,224 - DVU0383 0.41 -0.7
433,235 + DVU0383 0.44 +1.4
433,235 + DVU0383 0.44 +2.3
433,240 + DVU0383 0.45 -0.9
433,245 + DVU0383 0.46 +2.3
433,248 - DVU0383 0.47 +1.1
433,248 - DVU0383 0.47 +0.3
433,253 - DVU0383 0.48 -2.2
433,307 + DVU0383 0.62 +0.4
433,315 - DVU0383 0.64 -1.0
433,317 + DVU0383 0.65 +3.1
433,332 + DVU0383 0.69 -1.2
433,351 - DVU0383 0.74 -0.4
433,376 - DVU0383 0.80 +0.2
433,388 - DVU0383 0.83 -1.3
433,403 - DVU0383 0.87 +0.3
433,446 + +0.8
433,446 + -1.9
433,489 + -1.7
433,513 - +1.5
433,537 + -2.3
433,634 - -1.5
433,644 + +1.3
433,656 - -2.1
433,656 - +0.1
433,741 + -0.3
433,741 + -1.6
433,766 - -1.4

Or see this region's nucleotide sequence