Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2906

Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
3,006,676	+		DVU2905	0.47	+2.1
3,006,684	+		DVU2905	0.48	-1.8
3,006,729	+		DVU2905	0.51	-0.2
3,006,729	+		DVU2905	0.51	-1.6
3,006,729	+		DVU2905	0.51	+1.7
3,006,737	-		DVU2905	0.52	+1.3
3,006,876	+		DVU2905	0.64	-1.7
3,006,884	+		DVU2905	0.65	-0.8
3,006,949	+		DVU2905	0.70	-1.4
3,006,975	+		DVU2905	0.72	+2.7
3,006,989	-		DVU2905	0.74	-3.5
3,006,994	-		DVU2905	0.74	+0.3
3,007,093	-		DVU2905	0.82	+0.8
3,007,101	-		DVU2905	0.83	+0.7
3,007,122	-		DVU2905	0.85	-0.9
3,007,129	+		DVU2905	0.85	-1.9
3,007,144	+		DVU2905	0.87	+1.2
3,007,176	+		DVU2905	0.89	-1.3
3,007,225	+				-0.4
3,007,275	+				+1.9
3,007,364	-				-2.0
3,007,385	+				-1.6
3,007,490	-				-1.4
3,007,554	-				+2.1
3,007,562	+				-1.1
3,007,577	+				-1.5
3,007,577	+				-0.6
3,007,577	+				-1.3
3,007,610	-				-0.8
3,007,610	-				-2.2
3,007,619	+				+0.6
3,007,622	-				-0.3
3,007,627	-				+2.3
3,007,639	+				-1.2
3,007,672	+				-1.1
3,007,674	-				-1.2
3,007,713	+				-2.8
3,007,733	+	umuC	DVU2906	0.11	+1.7
3,007,741	-	umuC	DVU2906	0.12	+0.5
3,007,820	+	umuC	DVU2906	0.17	-2.1
3,007,820	+	umuC	DVU2906	0.17	-1.4
3,007,820	+	umuC	DVU2906	0.17	-1.4
3,007,828	-	umuC	DVU2906	0.18	-0.3
3,007,853	+	umuC	DVU2906	0.20	-2.1
3,007,880	+	umuC	DVU2906	0.21	+3.7
3,007,903	+	umuC	DVU2906	0.23	-1.4
3,007,908	+	umuC	DVU2906	0.23	-2.3
3,007,930	+	umuC	DVU2906	0.25	+3.1
3,007,933	-	umuC	DVU2906	0.25	-1.8
3,007,933	-	umuC	DVU2906	0.25	+3.7
3,007,935	+	umuC	DVU2906	0.25	-1.3
3,007,938	-	umuC	DVU2906	0.26	-0.1
3,007,998	-	umuC	DVU2906	0.30	-1.6
3,008,082	+	umuC	DVU2906	0.36	-2.0
3,008,082	+	umuC	DVU2906	0.36	-1.5
3,008,082	+	umuC	DVU2906	0.36	+0.3
3,008,182	+	umuC	DVU2906	0.43	-1.4
3,008,230	+	umuC	DVU2906	0.46	-0.7
3,008,236	-	umuC	DVU2906	0.47	+1.6
3,008,286	+	umuC	DVU2906	0.50	-1.9
3,008,333	-	umuC	DVU2906	0.54	-0.9
3,008,335	+	umuC	DVU2906	0.54	-1.5
3,008,335	+	umuC	DVU2906	0.54	-0.7
3,008,335	+	umuC	DVU2906	0.54	-1.5
3,008,373	+	umuC	DVU2906	0.57	-1.3
3,008,406	-	umuC	DVU2906	0.59	-0.7
3,008,521	-	umuC	DVU2906	0.67	-1.2
3,008,584	+	umuC	DVU2906	0.72	-1.8
3,008,699	-	umuC	DVU2906	0.80	-0.7
3,008,707	+	umuC	DVU2906	0.80	-1.5
3,008,836	-	umuC	DVU2906	0.90	-1.3
3,009,003	+				+0.0
3,009,036	-				+0.1
3,009,088	+				+1.2
3,009,096	-				-0.7
3,009,182	-				-0.8
3,009,183	+				+3.1
3,009,196	+				-1.2
3,009,240	+	umuD	DVU2907	0.13	-1.7
3,009,243	-	umuD	DVU2907	0.13	-1.4
3,009,243	-	umuD	DVU2907	0.13	+2.5
3,009,325	-	umuD	DVU2907	0.30	-0.1
3,009,421	-	umuD	DVU2907	0.49	+1.5
3,009,459	+	umuD	DVU2907	0.57	+1.0
3,009,586	+	umuD	DVU2907	0.83	-1.9
3,009,589	-	umuD	DVU2907	0.83	-1.3
3,009,594	-	umuD	DVU2907	0.84	-1.8
3,009,599	-	umuD	DVU2907	0.85	-0.3
3,009,611	-	umuD	DVU2907	0.88	-1.5
3,009,646	-				+0.1
3,009,648	+				+0.7
3,009,656	+				-1.8
3,009,666	-				+0.1
3,009,673	+				-0.9
3,009,691	+				-1.3
3,009,701	-				-0.9
3,009,701	-				-0.7
3,009,790	-				-1.9
3,009,822	+				-1.5
3,009,830	-				-1.7
3,009,830	-				+0.3
3,009,864	+				+0.8
3,009,944	+				-0.8
3,009,944	+				-1.7
3,009,944	+				-0.1
3,009,952	-				+2.7