Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2121

Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
2,214,831	+	cpaC	DVU2119	0.65	-0.5
2,214,853	+	cpaC	DVU2119	0.66	-1.2
2,214,861	-	cpaC	DVU2119	0.67	+4.1
2,214,865	+	cpaC	DVU2119	0.67	-0.9
2,214,887	-	cpaC	DVU2119	0.69	-1.8
2,214,892	-	cpaC	DVU2119	0.69	-1.1
2,214,900	+	cpaC	DVU2119	0.70	-0.1
2,214,906	+	cpaC	DVU2119	0.70	-0.2
2,214,906	+	cpaC	DVU2119	0.70	-0.9
2,214,911	+	cpaC	DVU2119	0.70	-1.4
2,215,033	+	cpaC	DVU2119	0.79	-0.9
2,215,038	+	cpaC	DVU2119	0.79	-0.1
2,215,156	+	cpaC	DVU2119	0.87	+0.5
2,215,227	-				-3.2
2,215,237	-				+2.5
2,215,436	+		DVU2120	0.21	+0.6
2,215,441	+		DVU2120	0.22	-2.1
2,215,444	-		DVU2120	0.23	+2.2
2,215,447	-		DVU2120	0.24	-0.3
2,215,449	-		DVU2120	0.24	+2.8
2,215,736	+				-0.8
2,216,154	-		DVU2121	0.32	-2.7
2,216,255	+		DVU2121	0.40	-3.0
2,216,257	+		DVU2121	0.40	-1.5
2,216,300	+		DVU2121	0.44	+2.8
2,216,412	-		DVU2121	0.53	+1.8
2,216,462	+		DVU2121	0.57	+0.0
2,216,500	+		DVU2121	0.60	-3.0
2,216,582	+		DVU2121	0.67	-0.6
2,216,653	-		DVU2121	0.73	-1.7
2,216,666	+		DVU2121	0.74	-1.8
2,216,685	-		DVU2121	0.76	-0.6
2,216,737	+		DVU2121	0.80	+1.5
2,216,737	+		DVU2121	0.80	+0.3
2,216,800	+		DVU2121	0.85	-2.3
2,216,808	-		DVU2121	0.86	-0.7
2,216,930	+				+1.5
2,216,974	+				-1.7
2,217,112	+				-1.7
2,217,256	-				+3.8
2,217,335	+				-1.5
2,217,424	-				-1.0
2,217,485	+				+0.8
2,217,495	+				-1.8
2,217,524	-	cpaF	DVU2122	0.10	+1.8
2,217,539	-	cpaF	DVU2122	0.11	+1.8
2,217,692	-	cpaF	DVU2122	0.22	-0.8
2,217,764	-	cpaF	DVU2122	0.27	-1.1
2,217,787	-	cpaF	DVU2122	0.29	+2.2
2,217,859	+	cpaF	DVU2122	0.34	+1.0
2,217,882	+	cpaF	DVU2122	0.35	-1.6
2,217,900	-	cpaF	DVU2122	0.36	-1.4
2,217,922	-	cpaF	DVU2122	0.38	-0.8
2,217,960	+	cpaF	DVU2122	0.41	+4.8
2,217,963	-	cpaF	DVU2122	0.41	-1.5