Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt moeA-2 and DVU0952 are separated by 1 nucleotides DVU0952 and tyrS are separated by 193 nucleotides
DVU0951: moeA-2 - molybdopterin biosynthesis MoeA protein, putative (TIGR), at 1,043,876 to 1,045,294
moeA-2
DVU0952: DVU0952 - conserved hypothetical protein TIGR00282 (TIGR), at 1,045,296 to 1,046,168
DVU0952
DVU0953: tyrS - tyrosyl-tRNA synthetase (TIGR), at 1,046,362 to 1,047,558
tyrS
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1044.335 kb on - strand, within moeA-2 at 1044.477 kb on - strand, within moeA-2 at 1044.488 kb on + strand, within moeA-2 at 1044.683 kb on - strand, within moeA-2 at 1044.737 kb on + strand, within moeA-2 at 1044.802 kb on - strand, within moeA-2 at 1044.943 kb on + strand, within moeA-2 at 1044.944 kb on + strand, within moeA-2 at 1044.972 kb on - strand, within moeA-2 at 1045.056 kb on + strand, within moeA-2 at 1045.076 kb on - strand, within moeA-2 at 1045.142 kb on + strand, within moeA-2 at 1045.189 kb on + strand at 1045.287 kb on - strand at 1045.288 kb on + strand at 1045.296 kb on - strand at 1045.339 kb on + strand at 1045.347 kb on - strand at 1045.347 kb on - strand at 1045.349 kb on + strand at 1045.479 kb on + strand, within DVU0952 at 1045.479 kb on + strand, within DVU0952 at 1045.600 kb on - strand, within DVU0952 at 1045.629 kb on - strand, within DVU0952 at 1045.718 kb on + strand, within DVU0952 at 1045.726 kb on - strand, within DVU0952 at 1045.752 kb on + strand, within DVU0952 at 1045.781 kb on - strand, within DVU0952 at 1045.781 kb on - strand, within DVU0952 at 1045.807 kb on - strand, within DVU0952 at 1045.856 kb on - strand, within DVU0952 at 1045.925 kb on + strand, within DVU0952 at 1045.925 kb on + strand, within DVU0952 at 1045.935 kb on + strand, within DVU0952 at 1045.970 kb on + strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1045.978 kb on - strand, within DVU0952 at 1046.072 kb on + strand, within DVU0952 at 1046.072 kb on + strand, within DVU0952 at 1046.074 kb on + strand, within DVU0952 at 1046.074 kb on + strand, within DVU0952 at 1046.149 kb on + strand at 1046.169 kb on - strand at 1046.169 kb on - strand at 1046.188 kb on + strand at 1046.217 kb on + strand at 1046.220 kb on - strand at 1046.222 kb on + strand at 1046.222 kb on + strand at 1046.222 kb on + strand at 1046.222 kb on + strand at 1046.230 kb on - strand at 1046.230 kb on - strand at 1046.230 kb on - strand at 1046.230 kb on - strand at 1046.273 kb on - strand at 1046.321 kb on + strand at 1046.329 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05% remove 1,044,335 - moeA-2 DVU0951 0.32 +1.6 1,044,477 - moeA-2 DVU0951 0.42 +0.9 1,044,488 + moeA-2 DVU0951 0.43 -1.4 1,044,683 - moeA-2 DVU0951 0.57 -0.0 1,044,737 + moeA-2 DVU0951 0.61 +2.7 1,044,802 - moeA-2 DVU0951 0.65 +1.7 1,044,943 + moeA-2 DVU0951 0.75 -0.6 1,044,944 + moeA-2 DVU0951 0.75 +1.9 1,044,972 - moeA-2 DVU0951 0.77 -2.1 1,045,056 + moeA-2 DVU0951 0.83 +0.1 1,045,076 - moeA-2 DVU0951 0.85 +3.2 1,045,142 + moeA-2 DVU0951 0.89 +2.4 1,045,189 + -0.9 1,045,287 - -1.2 1,045,288 + +3.2 1,045,296 - -0.9 1,045,339 + -1.8 1,045,347 - +2.4 1,045,347 - +2.2 1,045,349 + -0.9 1,045,479 + DVU0952 0.21 -2.1 1,045,479 + DVU0952 0.21 +1.6 1,045,600 - DVU0952 0.35 -1.9 1,045,629 - DVU0952 0.38 -1.9 1,045,718 + DVU0952 0.48 +1.6 1,045,726 - DVU0952 0.49 -2.0 1,045,752 + DVU0952 0.52 -0.4 1,045,781 - DVU0952 0.56 +0.0 1,045,781 - DVU0952 0.56 -0.5 1,045,807 - DVU0952 0.59 +1.6 1,045,856 - DVU0952 0.64 +2.2 1,045,925 + DVU0952 0.72 +1.6 1,045,925 + DVU0952 0.72 -2.3 1,045,935 + DVU0952 0.73 +2.6 1,045,970 + DVU0952 0.77 -2.5 1,045,978 - DVU0952 0.78 -1.3 1,045,978 - DVU0952 0.78 -1.3 1,045,978 - DVU0952 0.78 -1.0 1,045,978 - DVU0952 0.78 -0.3 1,046,072 + DVU0952 0.89 -0.4 1,046,072 + DVU0952 0.89 -1.2 1,046,074 + DVU0952 0.89 -0.8 1,046,074 + DVU0952 0.89 +1.6 1,046,149 + +1.4 1,046,169 - -2.4 1,046,169 - -2.0 1,046,188 + -0.9 1,046,217 + +0.3 1,046,220 - -0.6 1,046,222 + -1.1 1,046,222 + +0.7 1,046,222 + -1.5 1,046,222 + -0.7 1,046,230 - +2.6 1,046,230 - +0.5 1,046,230 - +0.6 1,046,230 - -1.7 1,046,273 - -1.1 1,046,321 + -0.8 1,046,329 - +0.7
Or see this region's nucleotide sequence