Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF13417
Experiment: MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoLS4 without B12 vitamin with Casaminos (vit. assay) 0.05% |
---|---|---|---|---|---|
remove | |||||
1,860,995 | - | fusA-2 | DVU1799 | 0.57 | +2.8 |
1,861,070 | - | fusA-2 | DVU1799 | 0.61 | +0.7 |
1,861,072 | + | fusA-2 | DVU1799 | 0.61 | +3.8 |
1,861,080 | - | fusA-2 | DVU1799 | 0.61 | -1.7 |
1,861,080 | - | fusA-2 | DVU1799 | 0.61 | -0.5 |
1,861,080 | - | fusA-2 | DVU1799 | 0.61 | +2.5 |
1,861,101 | - | fusA-2 | DVU1799 | 0.62 | -0.7 |
1,861,184 | + | fusA-2 | DVU1799 | 0.66 | -0.1 |
1,861,283 | - | fusA-2 | DVU1799 | 0.71 | +3.5 |
1,861,283 | - | fusA-2 | DVU1799 | 0.71 | +1.9 |
1,861,288 | + | fusA-2 | DVU1799 | 0.71 | -1.6 |
1,861,312 | + | fusA-2 | DVU1799 | 0.72 | +0.2 |
1,861,332 | - | fusA-2 | DVU1799 | 0.73 | -1.1 |
1,861,440 | + | fusA-2 | DVU1799 | 0.79 | -0.9 |
1,861,549 | - | fusA-2 | DVU1799 | 0.84 | +3.8 |
1,861,690 | + | -2.3 | |||
1,861,925 | - | -0.0 | |||
1,862,909 | + | DORF13424 | 0.37 | +1.1 | |
1,863,070 | - | -2.8 | |||
1,863,238 | - | DVU1801 | 0.13 | -2.0 | |
1,863,407 | - | DVU1801 | 0.27 | -2.0 | |
1,863,449 | + | DVU1801 | 0.31 | +0.5 | |
1,863,449 | + | DVU1801 | 0.31 | -0.5 | |
1,863,449 | + | DVU1801 | 0.31 | -0.3 | |
1,863,459 | + | DVU1801 | 0.32 | +2.5 | |
1,863,467 | - | DVU1801 | 0.32 | +0.5 | |
1,863,526 | - | DVU1801 | 0.37 | -1.0 | |
1,863,535 | - | DVU1801 | 0.38 | -1.5 | |
1,863,564 | + | DVU1801 | 0.41 | -1.3 | |
1,863,672 | - | DVU1801 | 0.50 | -1.4 | |
1,863,863 | - | DVU1801 | 0.66 | -1.5 | |
1,863,873 | + | DVU1801 | 0.67 | -1.6 |
Or see this region's nucleotide sequence