Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003600

Experiment: Shikimic Acid 5 mM in soil extract

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid 5 mM in soil extract
4,040,158	+		ABIE53_003598	0.54	+2.0
4,040,158	+		ABIE53_003598	0.54	+0.4
4,040,158	+		ABIE53_003598	0.54	-1.9
4,040,158	+		ABIE53_003598	0.54	+0.8
4,040,158	+		ABIE53_003598	0.54	-0.6
4,040,158	+		ABIE53_003598	0.54	-0.2
4,040,158	+		ABIE53_003598	0.54	-0.3
4,040,158	+		ABIE53_003598	0.54	+2.5
4,040,158	+		ABIE53_003598	0.54	-1.2
4,040,158	+		ABIE53_003598	0.54	-0.6
4,040,158	+		ABIE53_003598	0.54	+2.0
4,040,158	+		ABIE53_003598	0.54	-1.0
4,040,158	+		ABIE53_003598	0.54	-0.9
4,040,159	-		ABIE53_003598	0.54	-0.0
4,040,159	-		ABIE53_003598	0.54	-0.2
4,040,159	-		ABIE53_003598	0.54	-0.0
4,040,161	+		ABIE53_003598	0.54	-0.7
4,040,161	+		ABIE53_003598	0.54	-0.2
4,040,161	+		ABIE53_003598	0.54	+0.4
4,040,161	+		ABIE53_003598	0.54	-2.3
4,040,161	+		ABIE53_003598	0.54	-1.0
4,040,161	+		ABIE53_003598	0.54	-0.1
4,040,161	+		ABIE53_003598	0.54	+2.0
4,040,161	+		ABIE53_003598	0.54	-1.4
4,040,161	+		ABIE53_003598	0.54	+0.6
4,040,161	+		ABIE53_003598	0.54	-0.5
4,040,161	+		ABIE53_003598	0.54	-0.3
4,040,161	+		ABIE53_003598	0.54	-0.4
4,040,161	+		ABIE53_003598	0.54	-0.3
4,040,162	-		ABIE53_003598	0.54	+1.8
4,040,162	-		ABIE53_003598	0.54	-0.3
4,040,162	-		ABIE53_003598	0.54	+0.3
4,040,162	-		ABIE53_003598	0.54	+0.8
4,040,162	-		ABIE53_003598	0.54	+1.0
4,040,162	-		ABIE53_003598	0.54	-0.8
4,040,162	-		ABIE53_003598	0.54	-1.3
4,040,162	-		ABIE53_003598	0.54	-0.3
4,040,162	-		ABIE53_003598	0.54	-0.9
4,040,162	-		ABIE53_003598	0.54	+2.0
4,040,162	-		ABIE53_003598	0.54	-0.6
4,040,162	-		ABIE53_003598	0.54	-1.2
4,040,162	-		ABIE53_003598	0.54	-1.0
4,040,162	-		ABIE53_003598	0.54	-1.0
4,040,314	+		ABIE53_003598	0.75	+0.0
4,040,314	+		ABIE53_003598	0.75	+0.4
4,040,314	+		ABIE53_003598	0.75	-0.6
4,040,314	+		ABIE53_003598	0.75	-1.6
4,040,315	-		ABIE53_003598	0.75	+1.0
4,040,315	-		ABIE53_003598	0.75	-0.6
4,040,315	-		ABIE53_003598	0.75	+0.6
4,040,315	-		ABIE53_003598	0.75	+0.5
4,040,315	-		ABIE53_003598	0.75	-2.2
4,040,315	-		ABIE53_003598	0.75	+0.8
4,040,315	-		ABIE53_003598	0.75	-0.2
4,040,315	-		ABIE53_003598	0.75	-1.3
4,040,341	+		ABIE53_003598	0.78	-0.8
4,040,341	+		ABIE53_003598	0.78	+0.1
4,040,342	-		ABIE53_003598	0.78	+0.2
4,040,342	-		ABIE53_003598	0.78	+0.0
4,040,342	-		ABIE53_003598	0.78	-0.0
4,040,342	-		ABIE53_003598	0.78	-0.6
4,040,357	+		ABIE53_003598	0.80	-1.4
4,040,357	+		ABIE53_003598	0.80	-1.3
4,040,357	+		ABIE53_003598	0.80	-0.0
4,040,358	-		ABIE53_003598	0.80	+0.5
4,040,358	-		ABIE53_003598	0.80	-0.8
4,040,358	-		ABIE53_003598	0.80	-1.2
4,040,407	+		ABIE53_003598	0.87	-0.6
4,040,407	+		ABIE53_003598	0.87	-2.5
4,040,407	+		ABIE53_003598	0.87	-0.8
4,040,407	+		ABIE53_003598	0.87	-0.3
4,040,407	+		ABIE53_003598	0.87	-0.8
4,040,407	+		ABIE53_003598	0.87	+0.3
4,040,407	+		ABIE53_003598	0.87	+0.0
4,040,407	+		ABIE53_003598	0.87	-1.3
4,040,407	+		ABIE53_003598	0.87	-0.5
4,040,407	+		ABIE53_003598	0.87	+0.8
4,040,407	+		ABIE53_003598	0.87	-0.1
4,040,407	+		ABIE53_003598	0.87	-0.5
4,040,407	+		ABIE53_003598	0.87	+0.0
4,040,407	+		ABIE53_003598	0.87	-1.8
4,040,407	+		ABIE53_003598	0.87	-0.6
4,040,407	+		ABIE53_003598	0.87	+0.0
4,040,407	+		ABIE53_003598	0.87	-1.7
4,040,407	+		ABIE53_003598	0.87	+0.9
4,040,407	+		ABIE53_003598	0.87	-1.2
4,040,407	+		ABIE53_003598	0.87	-0.7
4,040,408	-		ABIE53_003598	0.87	-0.5
4,040,408	-		ABIE53_003598	0.87	-0.8
4,040,408	-		ABIE53_003598	0.87	-0.3
4,040,408	-		ABIE53_003598	0.87	+1.3
4,040,408	-		ABIE53_003598	0.87	-0.6
4,040,408	-		ABIE53_003598	0.87	-0.2
4,040,408	-		ABIE53_003598	0.87	+1.2
4,040,408	-		ABIE53_003598	0.87	-0.3
4,040,408	-		ABIE53_003598	0.87	+2.0
4,040,408	-		ABIE53_003598	0.87	-0.0
4,040,408	-		ABIE53_003598	0.87	-1.0
4,040,408	-		ABIE53_003598	0.87	+1.4
4,040,408	-		ABIE53_003598	0.87	-0.2
4,040,408	-		ABIE53_003598	0.87	-0.7
4,040,408	-		ABIE53_003598	0.87	+0.5
4,040,408	-		ABIE53_003598	0.87	-0.0
4,040,408	-		ABIE53_003598	0.87	-0.5
4,040,408	-		ABIE53_003598	0.87	+0.3
4,040,408	-		ABIE53_003598	0.87	+0.2
4,040,408	-		ABIE53_003598	0.87	-1.2
4,040,408	-		ABIE53_003598	0.87	-0.5
4,040,408	-		ABIE53_003598	0.87	-0.1
4,040,408	-		ABIE53_003598	0.87	+1.0
4,040,408	-		ABIE53_003598	0.87	-1.2
4,040,408	-		ABIE53_003598	0.87	+0.4
4,040,408	-		ABIE53_003598	0.87	+0.0
4,040,503	+				-0.2
4,040,503	+				-3.0
4,040,504	-				+0.4
4,040,504	-				-0.3
4,040,504	-				+1.7
4,040,504	-				+0.9
4,040,548	+				+0.3
4,040,548	+				-0.6
4,040,548	+				-0.7
4,040,548	+				-2.3
4,040,548	+				-0.7
4,040,548	+				-0.6
4,040,548	+				-0.1
4,040,548	+				-0.4
4,040,548	+				-0.8
4,040,548	+				+0.7
4,040,548	+				-0.1
4,040,548	+				+0.6
4,040,548	+				-0.8
4,040,549	-				-0.8
4,040,549	-				+0.7
4,040,549	-				-1.3
4,040,549	-				+0.6
4,040,549	-				+1.3
4,040,549	-				+1.0
4,040,549	-				-0.9
4,040,549	-				+2.0
4,040,549	-				-0.8
4,040,549	-				+0.1
4,040,549	-				-0.6
4,040,549	-				-0.1
4,040,549	-				-2.1
4,040,549	-				-0.6
4,040,552	+				-0.7
4,040,552	+				-1.3
4,040,552	+				+0.8
4,040,552	+				+0.7
4,040,552	+				+0.2
4,040,552	+				-1.2
4,040,552	+				-0.0
4,040,552	+				+0.5
4,040,552	+				+1.5
4,040,552	+				+0.0
4,040,552	+				-0.4
4,040,552	+				-2.6
4,040,552	+				-0.7
4,040,553	-				-0.1
4,040,553	-				+0.4
4,040,553	-				-1.5
4,040,553	-				-0.3
4,040,553	-				-0.0
4,040,553	-				+0.5
4,040,553	-				+2.0
4,040,553	-				-0.8
4,040,553	-				+0.2
4,040,553	-				-0.1
4,040,606	+				-0.7
4,040,606	+				+1.0
4,040,606	+				-0.5
4,040,606	+				-0.4
4,040,606	+				-0.0
4,040,607	-				-0.7
4,040,607	-				-0.5
4,040,607	-				+1.1
4,040,607	-				+0.3
4,040,607	-				+1.2
4,040,607	-				-1.2
4,040,607	-				+3.0
4,040,608	+				+1.5
4,040,608	+				-0.6
4,040,608	+				-0.5
4,040,608	+				-1.2
4,040,608	+				-1.5
4,040,608	+				+0.4
4,040,608	+				-0.3
4,040,608	+				+0.8
4,040,608	+				+1.7
4,040,608	+				-0.4
4,040,608	+				+0.5
4,040,608	+				+0.8
4,040,608	+				-0.2
4,040,608	+				-0.8
4,040,608	+				-0.8
4,040,609	-				+0.4
4,040,609	-				-0.4
4,040,609	-				+0.4
4,040,609	-				+1.4
4,040,609	-				-0.8
4,040,609	-				-0.4
4,040,609	-				-0.9
4,040,609	-				-0.3
4,040,609	-				-0.1
4,040,609	-				-0.6
4,040,609	-				-0.3
4,040,609	-				-0.6
4,040,609	-				-0.3
4,040,609	-				-0.1
4,040,609	-				-0.5
4,040,609	-				-1.5
4,040,609	-				-0.1
4,040,615	+				-0.7
4,040,632	+				+0.5
4,040,632	+				+0.4
4,040,632	+				-0.6
4,040,632	+				-1.2
4,040,632	+				+0.2
4,040,632	+				-0.6
4,040,633	-				+0.4
4,040,633	-				-0.6
4,040,633	-				+2.0
4,040,646	+				-0.6
4,040,647	-				+0.8
4,040,750	+		ABIE53_003599	0.52	-0.1
4,040,750	+		ABIE53_003599	0.52	-0.8
4,040,751	-		ABIE53_003599	0.53	-0.8
4,040,773	+		ABIE53_003599	0.64	-1.0
4,040,773	+		ABIE53_003599	0.64	-0.5
4,040,773	+		ABIE53_003599	0.64	-0.2
4,040,773	+		ABIE53_003599	0.64	-0.2
4,040,773	+		ABIE53_003599	0.64	-0.4
4,040,773	+		ABIE53_003599	0.64	+0.2
4,040,773	+		ABIE53_003599	0.64	+1.8
4,040,773	+		ABIE53_003599	0.64	+1.0
4,040,773	+		ABIE53_003599	0.64	-1.0
4,040,773	+		ABIE53_003599	0.64	-1.0
4,040,773	+		ABIE53_003599	0.64	+1.0
4,040,774	-		ABIE53_003599	0.64	+0.7
4,040,774	-		ABIE53_003599	0.64	-2.5
4,040,774	-		ABIE53_003599	0.64	-2.1
4,040,774	-		ABIE53_003599	0.64	+0.8
4,040,774	-		ABIE53_003599	0.64	+0.1
4,040,774	-		ABIE53_003599	0.64	+0.5
4,040,774	-		ABIE53_003599	0.64	-1.8
4,040,831	-				-2.5
4,040,831	-				+0.0
4,040,831	-				+0.0
4,040,854	+				-0.2
4,040,855	-				-1.6
4,040,911	+				+0.5
4,040,912	-				-1.2
4,040,912	-				+0.5
4,040,912	-				+0.2
4,040,912	-				+2.0
4,040,912	-				-0.0
4,040,912	-				-1.5
4,041,067	+		ABIE53_003600	0.37	+0.7
4,041,068	-		ABIE53_003600	0.37	+0.2
4,041,068	-		ABIE53_003600	0.37	-0.1
4,041,068	-		ABIE53_003600	0.37	-1.1
4,041,068	-		ABIE53_003600	0.37	-0.6
4,041,068	-		ABIE53_003600	0.37	-0.9
4,041,068	-		ABIE53_003600	0.37	-0.4
4,041,068	-		ABIE53_003600	0.37	+0.5
4,041,068	-		ABIE53_003600	0.37	-1.6
4,041,095	+		ABIE53_003600	0.44	+0.3
4,041,095	+		ABIE53_003600	0.44	-0.2
4,041,095	+		ABIE53_003600	0.44	+2.0
4,041,095	+		ABIE53_003600	0.44	+0.4
4,041,096	-		ABIE53_003600	0.44	+0.2
4,041,096	-		ABIE53_003600	0.44	-0.0
4,041,096	-		ABIE53_003600	0.44	-0.0
4,041,096	-		ABIE53_003600	0.44	+0.4
4,041,096	-		ABIE53_003600	0.44	+0.2
4,041,096	-		ABIE53_003600	0.44	-0.9
4,041,096	-		ABIE53_003600	0.44	+1.3
4,041,096	-		ABIE53_003600	0.44	-2.6
4,041,208	+		ABIE53_003600	0.70	-1.2
4,041,209	-		ABIE53_003600	0.71	+0.3
4,041,209	-		ABIE53_003600	0.71	+0.9
4,041,209	-		ABIE53_003600	0.71	-1.1
4,041,209	-		ABIE53_003600	0.71	-1.6
4,041,209	-		ABIE53_003600	0.71	-1.7
4,041,217	+		ABIE53_003600	0.73	-0.4
4,041,218	-		ABIE53_003600	0.73	+0.5
4,041,218	-		ABIE53_003600	0.73	+0.4
4,041,218	-		ABIE53_003600	0.73	+0.2
4,041,218	-		ABIE53_003600	0.73	+0.6
4,041,218	-		ABIE53_003600	0.73	+1.0
4,041,495	+		ABIE53_003601	0.19	+0.3
4,041,495	+		ABIE53_003601	0.19	-2.4
4,041,495	+		ABIE53_003601	0.19	-0.0
4,041,495	+		ABIE53_003601	0.19	-1.0
4,041,495	+		ABIE53_003601	0.19	+1.0
4,041,495	+		ABIE53_003601	0.19	-1.4
4,041,495	+		ABIE53_003601	0.19	-0.3
4,041,495	+		ABIE53_003601	0.19	-0.1
4,041,496	-		ABIE53_003601	0.19	-0.3
4,041,496	-		ABIE53_003601	0.19	+0.1
4,041,496	-		ABIE53_003601	0.19	-1.2
4,041,496	-		ABIE53_003601	0.19	-0.3
4,041,496	-		ABIE53_003601	0.19	+2.3
4,041,496	-		ABIE53_003601	0.19	+0.4
4,041,496	-		ABIE53_003601	0.19	-1.3
4,041,496	-		ABIE53_003601	0.19	+0.4
4,041,496	-		ABIE53_003601	0.19	+0.1
4,041,516	+		ABIE53_003601	0.21	-0.6
4,041,517	-		ABIE53_003601	0.22	-0.0
4,041,609	+		ABIE53_003601	0.32	+1.4
4,041,609	+		ABIE53_003601	0.32	-1.9
4,041,609	+		ABIE53_003601	0.32	+0.7
4,041,609	+		ABIE53_003601	0.32	-0.0
4,041,609	+		ABIE53_003601	0.32	-0.7
4,041,609	+		ABIE53_003601	0.32	-2.1
4,041,609	+		ABIE53_003601	0.32	-1.2
4,041,610	-		ABIE53_003601	0.32	-0.7
4,041,610	-		ABIE53_003601	0.32	-0.4
4,041,610	-		ABIE53_003601	0.32	-0.6
4,041,610	-		ABIE53_003601	0.32	-2.0
4,041,610	-		ABIE53_003601	0.32	+1.0
4,041,610	-		ABIE53_003601	0.32	-0.4
4,041,610	-		ABIE53_003601	0.32	-0.0
4,041,610	-		ABIE53_003601	0.32	+0.2
4,041,610	-		ABIE53_003601	0.32	+2.1
4,041,610	-		ABIE53_003601	0.32	-0.3
4,041,610	-		ABIE53_003601	0.32	+0.4
4,041,610	-		ABIE53_003601	0.32	+0.3
4,041,610	-		ABIE53_003601	0.32	+0.8
4,041,610	-		ABIE53_003601	0.32	-0.6
4,041,630	+		ABIE53_003601	0.35	+0.0
4,041,630	+		ABIE53_003601	0.35	-0.3
4,041,630	+		ABIE53_003601	0.35	+0.3
4,041,630	+		ABIE53_003601	0.35	-0.3
4,041,630	+		ABIE53_003601	0.35	-0.7
4,041,630	+		ABIE53_003601	0.35	-1.5
4,041,631	-		ABIE53_003601	0.35	-0.2
4,041,631	-		ABIE53_003601	0.35	+0.8
4,041,631	-		ABIE53_003601	0.35	-0.6
4,041,631	-		ABIE53_003601	0.35	-1.3
4,041,631	-		ABIE53_003601	0.35	-0.2
4,041,631	-		ABIE53_003601	0.35	+0.8
4,041,631	-		ABIE53_003601	0.35	+0.4
4,041,631	-		ABIE53_003601	0.35	-2.4
4,041,666	+		ABIE53_003601	0.39	-0.5
4,041,729	+		ABIE53_003601	0.46	-1.8
4,041,730	-		ABIE53_003601	0.46	-2.8
4,041,730	-		ABIE53_003601	0.46	-0.6
4,041,730	-		ABIE53_003601	0.46	+0.4
4,041,940	+		ABIE53_003601	0.70	-1.6
4,041,940	+		ABIE53_003601	0.70	-0.5
4,041,941	-		ABIE53_003601	0.70	+1.6
4,042,060	-		ABIE53_003601	0.84	-0.2
4,042,240	+				-0.8
4,042,240	+				+0.1
4,042,240	+				-1.1
4,042,240	+				+0.2
4,042,241	-				+1.2
4,042,241	-				+0.6
4,042,270	+				+0.6
4,042,270	+				+0.2
4,042,271	-				+1.3
4,042,271	-				+1.6
4,042,271	-				-1.6
4,042,271	-				+1.7