Experiment: MoLS4 without Pantothenic with Casamino acids (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mcpD and cheW-1 are separated by 45 nucleotides cheW-1 and LysE are separated by 359 nucleotides LysE and iciA are separated by 97 nucleotides
DVU0591: mcpD - methyl-accepting chemotaxis protein (TIGR), at 659,306 to 661,264
mcpD
DVU0592: cheW-1 - chemotaxis protein CheW (TIGR), at 661,310 to 661,831
cheW-1
DVU0593: LysE - L-lysine exporter, putative (TIGR), at 662,191 to 662,811
LysE
DVU0594: iciA - chromosome initiation inhibitor (TIGR), at 662,909 to 663,811
iciA
Position (kb) 662
663 Strain fitness (log2 ratio) -2
-1
0
1
2 at 661.235 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.258 kb on + strand at 661.266 kb on - strand at 661.266 kb on - strand at 661.278 kb on + strand at 661.283 kb on + strand at 661.327 kb on + strand at 661.343 kb on - strand at 661.343 kb on - strand at 661.355 kb on - strand at 661.364 kb on - strand, within cheW-1 at 661.411 kb on - strand, within cheW-1 at 661.433 kb on - strand, within cheW-1 at 661.438 kb on - strand, within cheW-1 at 661.461 kb on + strand, within cheW-1 at 661.475 kb on + strand, within cheW-1 at 661.511 kb on + strand, within cheW-1 at 661.704 kb on + strand, within cheW-1 at 661.750 kb on + strand, within cheW-1 at 661.750 kb on + strand, within cheW-1 at 661.901 kb on - strand at 661.912 kb on - strand at 661.961 kb on + strand at 661.980 kb on + strand at 662.010 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.079 kb on + strand at 662.087 kb on - strand at 662.087 kb on - strand at 662.241 kb on + strand at 662.241 kb on + strand at 662.241 kb on - strand at 662.251 kb on + strand at 662.265 kb on - strand, within LysE at 662.306 kb on - strand, within LysE at 662.407 kb on - strand, within LysE at 662.452 kb on - strand, within LysE at 662.468 kb on + strand, within LysE at 662.491 kb on - strand, within LysE at 662.545 kb on - strand, within LysE at 662.641 kb on - strand, within LysE at 662.728 kb on - strand, within LysE at 662.780 kb on - strand at 662.787 kb on + strand at 662.795 kb on - strand at 662.837 kb on + strand at 662.842 kb on + strand at 662.916 kb on + strand at 662.924 kb on - strand at 662.926 kb on + strand at 662.926 kb on + strand at 662.989 kb on - strand at 663.026 kb on + strand, within iciA at 663.034 kb on - strand, within iciA at 663.036 kb on + strand, within iciA at 663.061 kb on + strand, within iciA at 663.069 kb on - strand, within iciA at 663.074 kb on - strand, within iciA at 663.076 kb on + strand, within iciA at 663.111 kb on + strand, within iciA at 663.117 kb on + strand, within iciA at 663.119 kb on - strand, within iciA at 663.119 kb on - strand, within iciA at 663.139 kb on + strand, within iciA at 663.147 kb on - strand, within iciA at 663.173 kb on - strand, within iciA at 663.196 kb on + strand, within iciA at 663.370 kb on + strand, within iciA at 663.378 kb on - strand, within iciA at 663.383 kb on - strand, within iciA at 663.383 kb on - strand, within iciA at 663.383 kb on - strand, within iciA at 663.407 kb on - strand, within iciA at 663.454 kb on - strand, within iciA at 663.626 kb on - strand, within iciA at 663.714 kb on - strand, within iciA at 663.790 kb on - strand at 663.790 kb on - strand at 663.790 kb on - strand at 663.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Pantothenic with Casamino acids (vit. assay) 0.05% remove 661,235 + -1.6 661,258 + +0.1 661,258 + +0.0 661,258 + -1.2 661,258 + +0.2 661,266 - +0.0 661,266 - -0.6 661,278 + +0.1 661,283 + +0.0 661,327 + +0.2 661,343 - +0.5 661,343 - -0.2 661,355 - -1.8 661,364 - cheW-1 DVU0592 0.10 -1.3 661,411 - cheW-1 DVU0592 0.19 +0.1 661,433 - cheW-1 DVU0592 0.24 +0.2 661,438 - cheW-1 DVU0592 0.25 +1.5 661,461 + cheW-1 DVU0592 0.29 -0.3 661,475 + cheW-1 DVU0592 0.32 -0.3 661,511 + cheW-1 DVU0592 0.39 -0.5 661,704 + cheW-1 DVU0592 0.75 -1.9 661,750 + cheW-1 DVU0592 0.84 -0.3 661,750 + cheW-1 DVU0592 0.84 -1.0 661,901 - +1.0 661,912 - +0.4 661,961 + +0.4 661,980 + -1.8 662,010 + -0.0 662,079 + -1.5 662,079 + -0.3 662,079 + -0.2 662,079 + +0.0 662,079 + -1.3 662,087 - -0.4 662,087 - -0.0 662,241 + +0.2 662,241 + -1.7 662,241 - +0.3 662,251 + +1.3 662,265 - LysE DVU0593 0.12 -0.8 662,306 - LysE DVU0593 0.19 -0.1 662,407 - LysE DVU0593 0.35 -0.4 662,452 - LysE DVU0593 0.42 -1.0 662,468 + LysE DVU0593 0.45 -0.0 662,491 - LysE DVU0593 0.48 -0.3 662,545 - LysE DVU0593 0.57 -0.5 662,641 - LysE DVU0593 0.72 -0.6 662,728 - LysE DVU0593 0.86 +0.1 662,780 - +0.6 662,787 + +0.1 662,795 - -0.0 662,837 + -0.1 662,842 + -0.5 662,916 + +1.3 662,924 - -0.3 662,926 + +0.5 662,926 + -0.4 662,989 - -0.6 663,026 + iciA DVU0594 0.13 +0.8 663,034 - iciA DVU0594 0.14 +0.1 663,036 + iciA DVU0594 0.14 -0.6 663,061 + iciA DVU0594 0.17 +0.7 663,069 - iciA DVU0594 0.18 -0.3 663,074 - iciA DVU0594 0.18 -0.1 663,076 + iciA DVU0594 0.18 +0.3 663,111 + iciA DVU0594 0.22 -0.2 663,117 + iciA DVU0594 0.23 -1.9 663,119 - iciA DVU0594 0.23 +0.8 663,119 - iciA DVU0594 0.23 -1.1 663,139 + iciA DVU0594 0.25 -0.3 663,147 - iciA DVU0594 0.26 -0.3 663,173 - iciA DVU0594 0.29 +0.0 663,196 + iciA DVU0594 0.32 +0.1 663,370 + iciA DVU0594 0.51 +0.2 663,378 - iciA DVU0594 0.52 -1.1 663,383 - iciA DVU0594 0.52 +0.1 663,383 - iciA DVU0594 0.52 +0.1 663,383 - iciA DVU0594 0.52 +0.1 663,407 - iciA DVU0594 0.55 +2.3 663,454 - iciA DVU0594 0.60 -0.8 663,626 - iciA DVU0594 0.79 +1.9 663,714 - iciA DVU0594 0.89 +0.5 663,790 - -0.0 663,790 - +0.3 663,790 - -0.2 663,808 + -0.3
Or see this region's nucleotide sequence