Experiment: No vitamins t2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_220 and Pf6N2E2_221 are separated by 112 nucleotides Pf6N2E2_221 and Pf6N2E2_222 are separated by 2 nucleotides
Pf6N2E2_220 - Sensory histidine kinase BaeS, at 277,708 to 279,126
_220
Pf6N2E2_221 - RND efflux system, membrane fusion protein CmeA, at 279,239 to 280,432
_221
Pf6N2E2_222 - RND efflux system, inner membrane transporter CmeB, at 280,435 to 283,581
_222
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.400 kb on + strand, within Pf6N2E2_220 at 278.402 kb on + strand, within Pf6N2E2_220 at 278.403 kb on - strand, within Pf6N2E2_220 at 278.403 kb on - strand, within Pf6N2E2_220 at 278.474 kb on + strand, within Pf6N2E2_220 at 278.613 kb on - strand, within Pf6N2E2_220 at 278.979 kb on - strand, within Pf6N2E2_220 at 279.064 kb on - strand at 279.128 kb on + strand at 279.238 kb on + strand at 279.238 kb on + strand at 279.239 kb on - strand at 279.444 kb on + strand at 279.522 kb on - strand, within Pf6N2E2_221 at 279.542 kb on + strand, within Pf6N2E2_221 at 279.542 kb on + strand, within Pf6N2E2_221 at 279.542 kb on + strand, within Pf6N2E2_221 at 279.542 kb on + strand, within Pf6N2E2_221 at 279.542 kb on + strand, within Pf6N2E2_221 at 279.543 kb on - strand, within Pf6N2E2_221 at 279.758 kb on + strand, within Pf6N2E2_221 at 279.758 kb on + strand, within Pf6N2E2_221 at 279.758 kb on + strand, within Pf6N2E2_221 at 279.759 kb on - strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.878 kb on + strand, within Pf6N2E2_221 at 279.879 kb on - strand, within Pf6N2E2_221 at 279.882 kb on + strand, within Pf6N2E2_221 at 279.882 kb on + strand, within Pf6N2E2_221 at 279.882 kb on + strand, within Pf6N2E2_221 at 279.882 kb on + strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.883 kb on - strand, within Pf6N2E2_221 at 279.945 kb on + strand, within Pf6N2E2_221 at 279.945 kb on + strand, within Pf6N2E2_221 at 279.946 kb on - strand, within Pf6N2E2_221 at 279.946 kb on - strand, within Pf6N2E2_221 at 280.004 kb on + strand, within Pf6N2E2_221 at 280.004 kb on + strand, within Pf6N2E2_221 at 280.004 kb on + strand, within Pf6N2E2_221 at 280.005 kb on - strand, within Pf6N2E2_221 at 280.005 kb on - strand, within Pf6N2E2_221 at 280.005 kb on - strand, within Pf6N2E2_221 at 280.005 kb on - strand, within Pf6N2E2_221 at 280.118 kb on + strand, within Pf6N2E2_221 at 280.118 kb on + strand, within Pf6N2E2_221 at 280.118 kb on + strand, within Pf6N2E2_221 at 280.119 kb on - strand, within Pf6N2E2_221 at 280.119 kb on - strand, within Pf6N2E2_221 at 280.119 kb on - strand, within Pf6N2E2_221 at 280.579 kb on + strand at 280.579 kb on + strand at 280.663 kb on + strand at 280.663 kb on + strand at 280.663 kb on + strand at 280.663 kb on + strand at 280.663 kb on + strand at 280.663 kb on + strand at 280.663 kb on + strand at 280.664 kb on - strand at 280.664 kb on - strand at 280.664 kb on - strand at 280.664 kb on - strand at 280.664 kb on - strand at 280.664 kb on - strand at 280.664 kb on - strand at 280.904 kb on - strand, within Pf6N2E2_222 at 280.904 kb on - strand, within Pf6N2E2_222 at 280.904 kb on - strand, within Pf6N2E2_222 at 281.258 kb on - strand, within Pf6N2E2_222 at 281.258 kb on - strand, within Pf6N2E2_222 at 281.383 kb on + strand, within Pf6N2E2_222 at 281.383 kb on + strand, within Pf6N2E2_222
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t2 remove 278,400 + Pf6N2E2_220 0.49 -0.2 278,402 + Pf6N2E2_220 0.49 +1.8 278,403 - Pf6N2E2_220 0.49 -0.8 278,403 - Pf6N2E2_220 0.49 -0.2 278,474 + Pf6N2E2_220 0.54 -0.2 278,613 - Pf6N2E2_220 0.64 +1.2 278,979 - Pf6N2E2_220 0.90 -0.2 279,064 - +0.4 279,128 + -0.2 279,238 + -0.2 279,238 + -0.1 279,239 - -0.2 279,444 + -0.2 279,522 - Pf6N2E2_221 0.24 -1.8 279,542 + Pf6N2E2_221 0.25 -0.5 279,542 + Pf6N2E2_221 0.25 +1.2 279,542 + Pf6N2E2_221 0.25 +2.4 279,542 + Pf6N2E2_221 0.25 +0.4 279,542 + Pf6N2E2_221 0.25 -0.8 279,543 - Pf6N2E2_221 0.25 -0.6 279,758 + Pf6N2E2_221 0.43 +1.1 279,758 + Pf6N2E2_221 0.43 -0.2 279,758 + Pf6N2E2_221 0.43 +0.4 279,759 - Pf6N2E2_221 0.44 -0.2 279,878 + Pf6N2E2_221 0.54 -2.2 279,878 + Pf6N2E2_221 0.54 +0.1 279,878 + Pf6N2E2_221 0.54 +0.8 279,878 + Pf6N2E2_221 0.54 -1.4 279,878 + Pf6N2E2_221 0.54 +0.4 279,878 + Pf6N2E2_221 0.54 -1.8 279,878 + Pf6N2E2_221 0.54 +0.8 279,879 - Pf6N2E2_221 0.54 -1.0 279,882 + Pf6N2E2_221 0.54 -1.2 279,882 + Pf6N2E2_221 0.54 +0.8 279,882 + Pf6N2E2_221 0.54 +0.8 279,882 + Pf6N2E2_221 0.54 -1.0 279,883 - Pf6N2E2_221 0.54 -0.2 279,883 - Pf6N2E2_221 0.54 +0.0 279,883 - Pf6N2E2_221 0.54 +0.4 279,883 - Pf6N2E2_221 0.54 +1.4 279,883 - Pf6N2E2_221 0.54 +0.3 279,883 - Pf6N2E2_221 0.54 +0.1 279,883 - Pf6N2E2_221 0.54 -0.2 279,945 + Pf6N2E2_221 0.59 +0.1 279,945 + Pf6N2E2_221 0.59 -0.4 279,946 - Pf6N2E2_221 0.59 +1.5 279,946 - Pf6N2E2_221 0.59 -0.2 280,004 + Pf6N2E2_221 0.64 -0.2 280,004 + Pf6N2E2_221 0.64 -0.2 280,004 + Pf6N2E2_221 0.64 -1.6 280,005 - Pf6N2E2_221 0.64 +2.1 280,005 - Pf6N2E2_221 0.64 -1.0 280,005 - Pf6N2E2_221 0.64 -0.6 280,005 - Pf6N2E2_221 0.64 -1.4 280,118 + Pf6N2E2_221 0.74 +0.2 280,118 + Pf6N2E2_221 0.74 +1.1 280,118 + Pf6N2E2_221 0.74 +0.4 280,119 - Pf6N2E2_221 0.74 +0.2 280,119 - Pf6N2E2_221 0.74 +0.1 280,119 - Pf6N2E2_221 0.74 -0.1 280,579 + -1.2 280,579 + -0.9 280,663 + +0.0 280,663 + -0.2 280,663 + +0.4 280,663 + -0.7 280,663 + -0.2 280,663 + -0.8 280,663 + -0.5 280,664 - -0.7 280,664 - -0.9 280,664 - -1.2 280,664 - -0.5 280,664 - -1.2 280,664 - -1.2 280,664 - +1.1 280,904 - Pf6N2E2_222 0.15 -0.6 280,904 - Pf6N2E2_222 0.15 -1.1 280,904 - Pf6N2E2_222 0.15 +1.2 281,258 - Pf6N2E2_222 0.26 -1.2 281,258 - Pf6N2E2_222 0.26 -0.2 281,383 + Pf6N2E2_222 0.30 -2.0 281,383 + Pf6N2E2_222 0.30 +1.6
Or see this region's nucleotide sequence