Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1025

Experiment: No vitamins t2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1024 and Pf6N2E2_1025 are separated by 12 nucleotidesPf6N2E2_1025 and Pf6N2E2_1026 are separated by 99 nucleotides Pf6N2E2_1024 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases, at 1,197,062 to 1,198,414 _1024 Pf6N2E2_1025 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,198,427 to 1,199,380 _1025 Pf6N2E2_1026 - Rhodanese-related sulfurtransferase, at 1,199,480 to 1,201,063 _1026 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -3 -2 -1 0 1at 1197.675 kb on + strand, within Pf6N2E2_1024at 1197.897 kb on + strand, within Pf6N2E2_1024at 1197.898 kb on - strand, within Pf6N2E2_1024at 1198.116 kb on + strand, within Pf6N2E2_1024at 1198.207 kb on - strand, within Pf6N2E2_1024at 1198.299 kb on + strandat 1198.527 kb on + strand, within Pf6N2E2_1025at 1198.528 kb on - strand, within Pf6N2E2_1025at 1198.528 kb on - strand, within Pf6N2E2_1025at 1198.736 kb on - strand, within Pf6N2E2_1025at 1198.767 kb on + strand, within Pf6N2E2_1025at 1198.767 kb on + strand, within Pf6N2E2_1025at 1198.974 kb on + strand, within Pf6N2E2_1025at 1199.071 kb on + strand, within Pf6N2E2_1025at 1199.072 kb on - strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.139 kb on + strand, within Pf6N2E2_1025at 1199.140 kb on - strand, within Pf6N2E2_1025at 1199.140 kb on - strand, within Pf6N2E2_1025at 1199.446 kb on + strandat 1199.446 kb on + strandat 1199.535 kb on + strandat 1199.535 kb on + strandat 1199.536 kb on - strandat 1199.536 kb on - strandat 1199.550 kb on + strandat 1199.589 kb on + strandat 1199.590 kb on - strandat 1199.601 kb on + strandat 1199.772 kb on + strand, within Pf6N2E2_1026at 1199.772 kb on + strand, within Pf6N2E2_1026at 1199.773 kb on - strand, within Pf6N2E2_1026at 1199.773 kb on - strand, within Pf6N2E2_1026at 1199.859 kb on + strand, within Pf6N2E2_1026at 1199.860 kb on - strand, within Pf6N2E2_1026at 1199.860 kb on - strand, within Pf6N2E2_1026at 1199.860 kb on - strand, within Pf6N2E2_1026at 1199.860 kb on - strand, within Pf6N2E2_1026at 1200.021 kb on + strand, within Pf6N2E2_1026at 1200.021 kb on + strand, within Pf6N2E2_1026at 1200.021 kb on + strand, within Pf6N2E2_1026at 1200.022 kb on - strand, within Pf6N2E2_1026at 1200.022 kb on - strand, within Pf6N2E2_1026at 1200.022 kb on - strand, within Pf6N2E2_1026at 1200.219 kb on + strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t2
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1,197,675 + Pf6N2E2_1024 0.45 -1.5
1,197,897 + Pf6N2E2_1024 0.62 -1.5
1,197,898 - Pf6N2E2_1024 0.62 +0.9
1,198,116 + Pf6N2E2_1024 0.78 -0.7
1,198,207 - Pf6N2E2_1024 0.85 -0.5
1,198,299 + -0.5
1,198,527 + Pf6N2E2_1025 0.10 -1.5
1,198,528 - Pf6N2E2_1025 0.11 -1.4
1,198,528 - Pf6N2E2_1025 0.11 -1.7
1,198,736 - Pf6N2E2_1025 0.32 +0.1
1,198,767 + Pf6N2E2_1025 0.36 -3.1
1,198,767 + Pf6N2E2_1025 0.36 -1.1
1,198,974 + Pf6N2E2_1025 0.57 -1.7
1,199,071 + Pf6N2E2_1025 0.68 -0.5
1,199,072 - Pf6N2E2_1025 0.68 -0.9
1,199,139 + Pf6N2E2_1025 0.75 +1.1
1,199,139 + Pf6N2E2_1025 0.75 -0.5
1,199,139 + Pf6N2E2_1025 0.75 +0.5
1,199,139 + Pf6N2E2_1025 0.75 -1.5
1,199,140 - Pf6N2E2_1025 0.75 +0.3
1,199,140 - Pf6N2E2_1025 0.75 -0.5
1,199,446 + -0.5
1,199,446 + +0.1
1,199,535 + -0.5
1,199,535 + +0.1
1,199,536 - -2.1
1,199,536 - -0.5
1,199,550 + +0.9
1,199,589 + -0.2
1,199,590 - -1.5
1,199,601 + -0.5
1,199,772 + Pf6N2E2_1026 0.18 +1.2
1,199,772 + Pf6N2E2_1026 0.18 +1.1
1,199,773 - Pf6N2E2_1026 0.18 +1.1
1,199,773 - Pf6N2E2_1026 0.18 +0.7
1,199,859 + Pf6N2E2_1026 0.24 +1.1
1,199,860 - Pf6N2E2_1026 0.24 +0.9
1,199,860 - Pf6N2E2_1026 0.24 -0.5
1,199,860 - Pf6N2E2_1026 0.24 -0.5
1,199,860 - Pf6N2E2_1026 0.24 +0.5
1,200,021 + Pf6N2E2_1026 0.34 -1.8
1,200,021 + Pf6N2E2_1026 0.34 -1.2
1,200,021 + Pf6N2E2_1026 0.34 +0.5
1,200,022 - Pf6N2E2_1026 0.34 +1.1
1,200,022 - Pf6N2E2_1026 0.34 -1.5
1,200,022 - Pf6N2E2_1026 0.34 -0.5
1,200,219 + Pf6N2E2_1026 0.47 +0.5
1,200,220 - Pf6N2E2_1026 0.47 -1.5
1,200,220 - Pf6N2E2_1026 0.47 +0.1
1,200,220 - Pf6N2E2_1026 0.47 -0.5
1,200,220 - Pf6N2E2_1026 0.47 -1.2
1,200,220 - Pf6N2E2_1026 0.47 -0.8
1,200,220 - Pf6N2E2_1026 0.47 +0.1
1,200,220 - Pf6N2E2_1026 0.47 -0.5

Or see this region's nucleotide sequence