Experiment: MoLS4 without Pyridoxine Hydrochloride with Casaminos (vit. assay) 0.05%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0298 and DORF4420 are separated by 72 nucleotides DORF4420 and DVU0299 are separated by 178 nucleotides DVU0299 and DVU0300 overlap by 119 nucleotides DVU0300 and DVU0301 are separated by 165 nucleotides
DVU0298: DVU0298 - hypothetical protein (TIGR), at 344,447 to 345,232
DVU0298
DORF4420: DORF4420 - no description, at 345,305 to 345,463
DORF4420
DVU0299: DVU0299 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 345,642 to 347,687
DVU0299
DVU0300: DVU0300 - radical SAM domain protein (TIGR), at 347,569 to 348,306
DVU0300
DVU0301: DVU0301 - hypothetical protein (TIGR), at 348,472 to 348,621
DVU0301
Position (kb) 345
346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 344.777 kb on + strand, within DVU0298 at 344.829 kb on - strand, within DVU0298 at 344.989 kb on - strand, within DVU0298 at 345.005 kb on + strand, within DVU0298 at 345.058 kb on - strand, within DVU0298 at 345.357 kb on + strand, within DORF4420 at 345.362 kb on + strand, within DORF4420 at 345.365 kb on - strand, within DORF4420 at 345.372 kb on - strand, within DORF4420 at 345.389 kb on - strand, within DORF4420 at 345.402 kb on + strand, within DORF4420 at 345.435 kb on + strand, within DORF4420 at 345.435 kb on + strand, within DORF4420 at 345.558 kb on + strand at 345.622 kb on - strand at 345.918 kb on - strand, within DVU0299 at 345.924 kb on - strand, within DVU0299 at 345.945 kb on - strand, within DVU0299 at 345.960 kb on - strand, within DVU0299 at 345.983 kb on + strand, within DVU0299 at 345.995 kb on + strand, within DVU0299 at 346.038 kb on - strand, within DVU0299 at 346.062 kb on + strand, within DVU0299 at 346.125 kb on - strand, within DVU0299 at 346.178 kb on + strand, within DVU0299 at 346.256 kb on - strand, within DVU0299 at 346.430 kb on - strand, within DVU0299 at 346.541 kb on + strand, within DVU0299 at 346.607 kb on - strand, within DVU0299 at 346.613 kb on - strand, within DVU0299 at 346.739 kb on - strand, within DVU0299 at 346.752 kb on - strand, within DVU0299 at 346.812 kb on + strand, within DVU0299 at 346.827 kb on + strand, within DVU0299 at 346.832 kb on + strand, within DVU0299 at 346.915 kb on + strand, within DVU0299 at 346.961 kb on + strand, within DVU0299 at 346.969 kb on - strand, within DVU0299 at 347.016 kb on + strand, within DVU0299 at 347.032 kb on - strand, within DVU0299 at 347.094 kb on - strand, within DVU0299 at 347.138 kb on - strand, within DVU0299 at 347.212 kb on + strand, within DVU0299 at 347.241 kb on - strand, within DVU0299 at 347.354 kb on - strand, within DVU0299 at 347.486 kb on - strand at 347.499 kb on + strand at 347.514 kb on - strand at 347.696 kb on + strand, within DVU0300 at 347.704 kb on - strand, within DVU0300 at 348.440 kb on - strand at 348.575 kb on - strand, within DVU0301 at 348.610 kb on + strand at 348.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Pyridoxine Hydrochloride with Casaminos (vit. assay) 0.05% remove 344,777 + DVU0298 0.42 -1.5 344,829 - DVU0298 0.49 +0.2 344,989 - DVU0298 0.69 -1.1 345,005 + DVU0298 0.71 +0.5 345,058 - DVU0298 0.78 +0.3 345,357 + DORF4420 0.33 -0.1 345,362 + DORF4420 0.36 -0.3 345,365 - DORF4420 0.38 +0.5 345,372 - DORF4420 0.42 -1.9 345,389 - DORF4420 0.53 -0.2 345,402 + DORF4420 0.61 -0.2 345,435 + DORF4420 0.82 -1.0 345,435 + DORF4420 0.82 -1.2 345,558 + -0.5 345,622 - -0.3 345,918 - DVU0299 0.13 -0.2 345,924 - DVU0299 0.14 -0.3 345,945 - DVU0299 0.15 +0.2 345,960 - DVU0299 0.16 -0.6 345,983 + DVU0299 0.17 -0.5 345,995 + DVU0299 0.17 -0.8 346,038 - DVU0299 0.19 -0.1 346,062 + DVU0299 0.21 -1.5 346,125 - DVU0299 0.24 -0.2 346,178 + DVU0299 0.26 -1.6 346,256 - DVU0299 0.30 +0.2 346,430 - DVU0299 0.39 +0.6 346,541 + DVU0299 0.44 -0.6 346,607 - DVU0299 0.47 -0.3 346,613 - DVU0299 0.47 -0.1 346,739 - DVU0299 0.54 -0.3 346,752 - DVU0299 0.54 -0.9 346,812 + DVU0299 0.57 +0.5 346,827 + DVU0299 0.58 -0.9 346,832 + DVU0299 0.58 +0.3 346,915 + DVU0299 0.62 +0.2 346,961 + DVU0299 0.64 +0.2 346,969 - DVU0299 0.65 -0.5 347,016 + DVU0299 0.67 -0.5 347,032 - DVU0299 0.68 +0.2 347,094 - DVU0299 0.71 -0.4 347,138 - DVU0299 0.73 -0.5 347,212 + DVU0299 0.77 -0.3 347,241 - DVU0299 0.78 -1.1 347,354 - DVU0299 0.84 -1.0 347,486 - -0.2 347,499 + +0.1 347,514 - -0.2 347,696 + DVU0300 0.17 -0.1 347,704 - DVU0300 0.18 +0.1 348,440 - +0.6 348,575 - DVU0301 0.69 -0.2 348,610 + -1.7 348,644 - -0.6
Or see this region's nucleotide sequence