Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_804

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_802 and Pf6N2E2_803 are separated by 386 nucleotidesPf6N2E2_803 and Pf6N2E2_804 are separated by 99 nucleotidesPf6N2E2_804 and Pf6N2E2_805 are separated by 12 nucleotides Pf6N2E2_802 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 933,262 to 934,269 _802 Pf6N2E2_803 - hypothetical protein, at 934,656 to 934,937 _803 Pf6N2E2_804 - Fructokinase (EC 2.7.1.4), at 935,037 to 935,975 _804 Pf6N2E2_805 - Xylulose kinase (EC 2.7.1.17) (from data), at 935,988 to 937,475 _805 Position (kb) 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 934.086 kb on + strand, within Pf6N2E2_802at 934.087 kb on - strand, within Pf6N2E2_802at 934.087 kb on - strand, within Pf6N2E2_802at 934.087 kb on - strand, within Pf6N2E2_802at 934.090 kb on + strand, within Pf6N2E2_802at 934.090 kb on + strand, within Pf6N2E2_802at 934.090 kb on + strand, within Pf6N2E2_802at 934.091 kb on - strand, within Pf6N2E2_802at 934.091 kb on - strand, within Pf6N2E2_802at 934.091 kb on - strand, within Pf6N2E2_802at 934.091 kb on - strand, within Pf6N2E2_802at 934.091 kb on - strand, within Pf6N2E2_802at 934.153 kb on + strand, within Pf6N2E2_802at 934.153 kb on + strand, within Pf6N2E2_802at 934.153 kb on + strand, within Pf6N2E2_802at 934.154 kb on - strand, within Pf6N2E2_802at 934.154 kb on - strand, within Pf6N2E2_802at 934.282 kb on + strandat 934.283 kb on - strandat 934.333 kb on - strandat 934.335 kb on + strandat 934.342 kb on + strandat 934.347 kb on + strandat 934.347 kb on + strandat 934.347 kb on + strandat 934.347 kb on + strandat 934.347 kb on + strandat 934.347 kb on + strandat 934.347 kb on + strandat 934.348 kb on - strandat 934.393 kb on + strandat 934.440 kb on + strandat 934.440 kb on + strandat 934.440 kb on + strandat 934.542 kb on + strandat 934.572 kb on + strandat 934.624 kb on + strandat 934.624 kb on + strandat 934.624 kb on + strandat 934.624 kb on + strandat 934.624 kb on + strandat 934.624 kb on + strandat 934.625 kb on - strandat 934.625 kb on - strandat 934.625 kb on - strandat 934.625 kb on - strandat 934.663 kb on + strandat 934.663 kb on + strandat 934.955 kb on + strandat 934.955 kb on + strandat 934.956 kb on - strandat 935.056 kb on + strandat 935.214 kb on - strand, within Pf6N2E2_804at 935.383 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.428 kb on + strand, within Pf6N2E2_804at 935.429 kb on - strand, within Pf6N2E2_804at 935.429 kb on - strand, within Pf6N2E2_804at 935.625 kb on + strand, within Pf6N2E2_804at 935.677 kb on + strand, within Pf6N2E2_804at 935.678 kb on - strand, within Pf6N2E2_804at 935.800 kb on + strand, within Pf6N2E2_804at 935.800 kb on + strand, within Pf6N2E2_804at 935.801 kb on - strand, within Pf6N2E2_804at 935.896 kb on + strandat 935.896 kb on + strandat 935.896 kb on + strandat 935.897 kb on - strandat 935.897 kb on - strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.971 kb on + strandat 935.972 kb on - strandat 935.972 kb on - strandat 935.972 kb on - strandat 935.972 kb on - strandat 935.975 kb on + strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 935.976 kb on - strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.022 kb on + strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.023 kb on - strandat 936.081 kb on + strandat 936.082 kb on - strandat 936.313 kb on + strand, within Pf6N2E2_805at 936.646 kb on + strand, within Pf6N2E2_805at 936.647 kb on - strand, within Pf6N2E2_805at 936.647 kb on - strand, within Pf6N2E2_805at 936.652 kb on + strand, within Pf6N2E2_805at 936.652 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.876 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.906 kb on + strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.907 kb on - strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.970 kb on + strand, within Pf6N2E2_805at 936.971 kb on - strand, within Pf6N2E2_805

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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934,086 + Pf6N2E2_802 0.82 +0.2
934,087 - Pf6N2E2_802 0.82 +0.7
934,087 - Pf6N2E2_802 0.82 -1.4
934,087 - Pf6N2E2_802 0.82 +1.9
934,090 + Pf6N2E2_802 0.82 -1.6
934,090 + Pf6N2E2_802 0.82 -0.4
934,090 + Pf6N2E2_802 0.82 +1.5
934,091 - Pf6N2E2_802 0.82 +0.9
934,091 - Pf6N2E2_802 0.82 -0.8
934,091 - Pf6N2E2_802 0.82 -0.7
934,091 - Pf6N2E2_802 0.82 +1.2
934,091 - Pf6N2E2_802 0.82 -2.4
934,153 + Pf6N2E2_802 0.88 -0.4
934,153 + Pf6N2E2_802 0.88 +0.6
934,153 + Pf6N2E2_802 0.88 -0.4
934,154 - Pf6N2E2_802 0.88 +0.8
934,154 - Pf6N2E2_802 0.88 +0.3
934,282 + -0.4
934,283 - +0.1
934,333 - -0.4
934,335 + -0.4
934,342 + +0.7
934,347 + -0.4
934,347 + +1.6
934,347 + -0.4
934,347 + -0.4
934,347 + -2.0
934,347 + +1.2
934,347 + -0.4
934,348 - -2.0
934,393 + +1.6
934,440 + -2.0
934,440 + -1.0
934,440 + +0.0
934,542 + -0.4
934,572 + -0.4
934,624 + -2.4
934,624 + -0.4
934,624 + +1.6
934,624 + -0.1
934,624 + -2.4
934,624 + +0.6
934,625 - +0.3
934,625 - -0.4
934,625 - -1.4
934,625 - -0.4
934,663 + +0.6
934,663 + -0.4
934,955 + +1.2
934,955 + -0.4
934,956 - +1.2
935,056 + -0.4
935,214 - Pf6N2E2_804 0.19 +0.6
935,383 + Pf6N2E2_804 0.37 +2.2
935,428 + Pf6N2E2_804 0.42 -0.4
935,428 + Pf6N2E2_804 0.42 +0.9
935,428 + Pf6N2E2_804 0.42 -1.6
935,428 + Pf6N2E2_804 0.42 -0.4
935,428 + Pf6N2E2_804 0.42 -0.4
935,428 + Pf6N2E2_804 0.42 +1.2
935,429 - Pf6N2E2_804 0.42 -0.4
935,429 - Pf6N2E2_804 0.42 +0.2
935,625 + Pf6N2E2_804 0.63 +1.4
935,677 + Pf6N2E2_804 0.68 -0.1
935,678 - Pf6N2E2_804 0.68 -0.4
935,800 + Pf6N2E2_804 0.81 +0.0
935,800 + Pf6N2E2_804 0.81 +0.3
935,801 - Pf6N2E2_804 0.81 +1.6
935,896 + -0.4
935,896 + -0.4
935,896 + +0.2
935,897 - +0.5
935,897 - -1.4
935,971 + +0.2
935,971 + +0.8
935,971 + -1.4
935,971 + -0.4
935,971 + +0.0
935,972 - -0.4
935,972 - -0.4
935,972 - -1.2
935,972 - +1.2
935,975 + -0.7
935,976 - -3.2
935,976 - +1.2
935,976 - -0.7
935,976 - -0.4
935,976 - +0.6
935,976 - -0.4
936,022 + -2.0
936,022 + -0.4
936,022 + +0.6
936,022 + -0.4
936,022 + -0.4
936,022 + +0.4
936,023 - -0.4
936,023 - +0.2
936,023 - -0.4
936,023 - -1.4
936,023 - -1.4
936,081 + -0.7
936,082 - +1.2
936,313 + Pf6N2E2_805 0.22 -0.2
936,646 + Pf6N2E2_805 0.44 -0.1
936,647 - Pf6N2E2_805 0.44 -0.4
936,647 - Pf6N2E2_805 0.44 -2.0
936,652 + Pf6N2E2_805 0.45 -0.4
936,652 + Pf6N2E2_805 0.45 -0.4
936,876 + Pf6N2E2_805 0.60 +0.1
936,876 + Pf6N2E2_805 0.60 +1.2
936,876 + Pf6N2E2_805 0.60 -2.0
936,906 + Pf6N2E2_805 0.62 +1.3
936,906 + Pf6N2E2_805 0.62 -0.4
936,906 + Pf6N2E2_805 0.62 +0.6
936,906 + Pf6N2E2_805 0.62 +0.3
936,907 - Pf6N2E2_805 0.62 +0.2
936,907 - Pf6N2E2_805 0.62 -1.7
936,907 - Pf6N2E2_805 0.62 -0.4
936,907 - Pf6N2E2_805 0.62 -0.8
936,970 + Pf6N2E2_805 0.66 +0.8
936,970 + Pf6N2E2_805 0.66 -0.4
936,970 + Pf6N2E2_805 0.66 -2.0
936,970 + Pf6N2E2_805 0.66 -1.4
936,970 + Pf6N2E2_805 0.66 -1.6
936,970 + Pf6N2E2_805 0.66 -0.2
936,971 - Pf6N2E2_805 0.66 +0.0

Or see this region's nucleotide sequence