Experiment: No vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_802 and Pf6N2E2_803 are separated by 386 nucleotides Pf6N2E2_803 and Pf6N2E2_804 are separated by 99 nucleotides Pf6N2E2_804 and Pf6N2E2_805 are separated by 12 nucleotides
Pf6N2E2_802 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 933,262 to 934,269
_802
Pf6N2E2_803 - hypothetical protein, at 934,656 to 934,937
_803
Pf6N2E2_804 - Fructokinase (EC 2.7.1.4), at 935,037 to 935,975
_804
Pf6N2E2_805 - Xylulose kinase (EC 2.7.1.17) (from data) , at 935,988 to 937,475
_805
Position (kb)
935
936 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 934.086 kb on + strand, within Pf6N2E2_802 at 934.087 kb on - strand, within Pf6N2E2_802 at 934.087 kb on - strand, within Pf6N2E2_802 at 934.087 kb on - strand, within Pf6N2E2_802 at 934.090 kb on + strand, within Pf6N2E2_802 at 934.090 kb on + strand, within Pf6N2E2_802 at 934.090 kb on + strand, within Pf6N2E2_802 at 934.091 kb on - strand, within Pf6N2E2_802 at 934.091 kb on - strand, within Pf6N2E2_802 at 934.091 kb on - strand, within Pf6N2E2_802 at 934.091 kb on - strand, within Pf6N2E2_802 at 934.091 kb on - strand, within Pf6N2E2_802 at 934.153 kb on + strand, within Pf6N2E2_802 at 934.153 kb on + strand, within Pf6N2E2_802 at 934.153 kb on + strand, within Pf6N2E2_802 at 934.154 kb on - strand, within Pf6N2E2_802 at 934.154 kb on - strand, within Pf6N2E2_802 at 934.282 kb on + strand at 934.283 kb on - strand at 934.333 kb on - strand at 934.335 kb on + strand at 934.342 kb on + strand at 934.347 kb on + strand at 934.347 kb on + strand at 934.347 kb on + strand at 934.347 kb on + strand at 934.347 kb on + strand at 934.347 kb on + strand at 934.347 kb on + strand at 934.348 kb on - strand at 934.393 kb on + strand at 934.440 kb on + strand at 934.440 kb on + strand at 934.440 kb on + strand at 934.542 kb on + strand at 934.572 kb on + strand at 934.624 kb on + strand at 934.624 kb on + strand at 934.624 kb on + strand at 934.624 kb on + strand at 934.624 kb on + strand at 934.624 kb on + strand at 934.625 kb on - strand at 934.625 kb on - strand at 934.625 kb on - strand at 934.625 kb on - strand at 934.663 kb on + strand at 934.663 kb on + strand at 934.955 kb on + strand at 934.955 kb on + strand at 934.956 kb on - strand at 935.056 kb on + strand at 935.214 kb on - strand, within Pf6N2E2_804 at 935.383 kb on + strand, within Pf6N2E2_804 at 935.428 kb on + strand, within Pf6N2E2_804 at 935.428 kb on + strand, within Pf6N2E2_804 at 935.428 kb on + strand, within Pf6N2E2_804 at 935.428 kb on + strand, within Pf6N2E2_804 at 935.428 kb on + strand, within Pf6N2E2_804 at 935.428 kb on + strand, within Pf6N2E2_804 at 935.429 kb on - strand, within Pf6N2E2_804 at 935.429 kb on - strand, within Pf6N2E2_804 at 935.625 kb on + strand, within Pf6N2E2_804 at 935.677 kb on + strand, within Pf6N2E2_804 at 935.678 kb on - strand, within Pf6N2E2_804 at 935.800 kb on + strand, within Pf6N2E2_804 at 935.800 kb on + strand, within Pf6N2E2_804 at 935.801 kb on - strand, within Pf6N2E2_804 at 935.896 kb on + strand at 935.896 kb on + strand at 935.896 kb on + strand at 935.897 kb on - strand at 935.897 kb on - strand at 935.971 kb on + strand at 935.971 kb on + strand at 935.971 kb on + strand at 935.971 kb on + strand at 935.971 kb on + strand at 935.972 kb on - strand at 935.972 kb on - strand at 935.972 kb on - strand at 935.972 kb on - strand at 935.975 kb on + strand at 935.976 kb on - strand at 935.976 kb on - strand at 935.976 kb on - strand at 935.976 kb on - strand at 935.976 kb on - strand at 935.976 kb on - strand at 936.022 kb on + strand at 936.022 kb on + strand at 936.022 kb on + strand at 936.022 kb on + strand at 936.022 kb on + strand at 936.022 kb on + strand at 936.023 kb on - strand at 936.023 kb on - strand at 936.023 kb on - strand at 936.023 kb on - strand at 936.023 kb on - strand at 936.081 kb on + strand at 936.082 kb on - strand at 936.313 kb on + strand, within Pf6N2E2_805 at 936.646 kb on + strand, within Pf6N2E2_805 at 936.647 kb on - strand, within Pf6N2E2_805 at 936.647 kb on - strand, within Pf6N2E2_805 at 936.652 kb on + strand, within Pf6N2E2_805 at 936.652 kb on + strand, within Pf6N2E2_805 at 936.876 kb on + strand, within Pf6N2E2_805 at 936.876 kb on + strand, within Pf6N2E2_805 at 936.876 kb on + strand, within Pf6N2E2_805 at 936.906 kb on + strand, within Pf6N2E2_805 at 936.906 kb on + strand, within Pf6N2E2_805 at 936.906 kb on + strand, within Pf6N2E2_805 at 936.906 kb on + strand, within Pf6N2E2_805 at 936.907 kb on - strand, within Pf6N2E2_805 at 936.907 kb on - strand, within Pf6N2E2_805 at 936.907 kb on - strand, within Pf6N2E2_805 at 936.907 kb on - strand, within Pf6N2E2_805 at 936.970 kb on + strand, within Pf6N2E2_805 at 936.970 kb on + strand, within Pf6N2E2_805 at 936.970 kb on + strand, within Pf6N2E2_805 at 936.970 kb on + strand, within Pf6N2E2_805 at 936.970 kb on + strand, within Pf6N2E2_805 at 936.970 kb on + strand, within Pf6N2E2_805 at 936.971 kb on - strand, within Pf6N2E2_805
Per-strain Table
Position Strand Gene LocusTag Fraction No vitamins t1 remove 934,086 + Pf6N2E2_802 0.82 +0.2 934,087 - Pf6N2E2_802 0.82 +0.7 934,087 - Pf6N2E2_802 0.82 -1.4 934,087 - Pf6N2E2_802 0.82 +1.9 934,090 + Pf6N2E2_802 0.82 -1.6 934,090 + Pf6N2E2_802 0.82 -0.4 934,090 + Pf6N2E2_802 0.82 +1.5 934,091 - Pf6N2E2_802 0.82 +0.9 934,091 - Pf6N2E2_802 0.82 -0.8 934,091 - Pf6N2E2_802 0.82 -0.7 934,091 - Pf6N2E2_802 0.82 +1.2 934,091 - Pf6N2E2_802 0.82 -2.4 934,153 + Pf6N2E2_802 0.88 -0.4 934,153 + Pf6N2E2_802 0.88 +0.6 934,153 + Pf6N2E2_802 0.88 -0.4 934,154 - Pf6N2E2_802 0.88 +0.8 934,154 - Pf6N2E2_802 0.88 +0.3 934,282 + -0.4 934,283 - +0.1 934,333 - -0.4 934,335 + -0.4 934,342 + +0.7 934,347 + -0.4 934,347 + +1.6 934,347 + -0.4 934,347 + -0.4 934,347 + -2.0 934,347 + +1.2 934,347 + -0.4 934,348 - -2.0 934,393 + +1.6 934,440 + -2.0 934,440 + -1.0 934,440 + +0.0 934,542 + -0.4 934,572 + -0.4 934,624 + -2.4 934,624 + -0.4 934,624 + +1.6 934,624 + -0.1 934,624 + -2.4 934,624 + +0.6 934,625 - +0.3 934,625 - -0.4 934,625 - -1.4 934,625 - -0.4 934,663 + +0.6 934,663 + -0.4 934,955 + +1.2 934,955 + -0.4 934,956 - +1.2 935,056 + -0.4 935,214 - Pf6N2E2_804 0.19 +0.6 935,383 + Pf6N2E2_804 0.37 +2.2 935,428 + Pf6N2E2_804 0.42 -0.4 935,428 + Pf6N2E2_804 0.42 +0.9 935,428 + Pf6N2E2_804 0.42 -1.6 935,428 + Pf6N2E2_804 0.42 -0.4 935,428 + Pf6N2E2_804 0.42 -0.4 935,428 + Pf6N2E2_804 0.42 +1.2 935,429 - Pf6N2E2_804 0.42 -0.4 935,429 - Pf6N2E2_804 0.42 +0.2 935,625 + Pf6N2E2_804 0.63 +1.4 935,677 + Pf6N2E2_804 0.68 -0.1 935,678 - Pf6N2E2_804 0.68 -0.4 935,800 + Pf6N2E2_804 0.81 +0.0 935,800 + Pf6N2E2_804 0.81 +0.3 935,801 - Pf6N2E2_804 0.81 +1.6 935,896 + -0.4 935,896 + -0.4 935,896 + +0.2 935,897 - +0.5 935,897 - -1.4 935,971 + +0.2 935,971 + +0.8 935,971 + -1.4 935,971 + -0.4 935,971 + +0.0 935,972 - -0.4 935,972 - -0.4 935,972 - -1.2 935,972 - +1.2 935,975 + -0.7 935,976 - -3.2 935,976 - +1.2 935,976 - -0.7 935,976 - -0.4 935,976 - +0.6 935,976 - -0.4 936,022 + -2.0 936,022 + -0.4 936,022 + +0.6 936,022 + -0.4 936,022 + -0.4 936,022 + +0.4 936,023 - -0.4 936,023 - +0.2 936,023 - -0.4 936,023 - -1.4 936,023 - -1.4 936,081 + -0.7 936,082 - +1.2 936,313 + Pf6N2E2_805 0.22 -0.2 936,646 + Pf6N2E2_805 0.44 -0.1 936,647 - Pf6N2E2_805 0.44 -0.4 936,647 - Pf6N2E2_805 0.44 -2.0 936,652 + Pf6N2E2_805 0.45 -0.4 936,652 + Pf6N2E2_805 0.45 -0.4 936,876 + Pf6N2E2_805 0.60 +0.1 936,876 + Pf6N2E2_805 0.60 +1.2 936,876 + Pf6N2E2_805 0.60 -2.0 936,906 + Pf6N2E2_805 0.62 +1.3 936,906 + Pf6N2E2_805 0.62 -0.4 936,906 + Pf6N2E2_805 0.62 +0.6 936,906 + Pf6N2E2_805 0.62 +0.3 936,907 - Pf6N2E2_805 0.62 +0.2 936,907 - Pf6N2E2_805 0.62 -1.7 936,907 - Pf6N2E2_805 0.62 -0.4 936,907 - Pf6N2E2_805 0.62 -0.8 936,970 + Pf6N2E2_805 0.66 +0.8 936,970 + Pf6N2E2_805 0.66 -0.4 936,970 + Pf6N2E2_805 0.66 -2.0 936,970 + Pf6N2E2_805 0.66 -1.4 936,970 + Pf6N2E2_805 0.66 -1.6 936,970 + Pf6N2E2_805 0.66 -0.2 936,971 - Pf6N2E2_805 0.66 +0.0
Or see this region's nucleotide sequence