Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1813

Experiment: No vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1812 and Pf6N2E2_1813 overlap by 4 nucleotidesPf6N2E2_1813 and Pf6N2E2_1814 overlap by 4 nucleotides Pf6N2E2_1812 - peptide ABC transporter, ATP-binding protein, at 2,144,208 to 2,145,224 _1812 Pf6N2E2_1813 - ABC-type oligopeptide transport system, ATPase component, at 2,145,221 to 2,146,210 _1813 Pf6N2E2_1814 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 2,146,207 to 2,147,631 _1814 Position (kb) 2145 2146 2147Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2144.539 kb on - strand, within Pf6N2E2_1812at 2144.539 kb on - strand, within Pf6N2E2_1812at 2144.904 kb on + strand, within Pf6N2E2_1812at 2144.905 kb on - strand, within Pf6N2E2_1812at 2144.905 kb on - strand, within Pf6N2E2_1812at 2144.967 kb on + strand, within Pf6N2E2_1812at 2144.990 kb on + strand, within Pf6N2E2_1812at 2145.403 kb on - strand, within Pf6N2E2_1813at 2145.518 kb on + strand, within Pf6N2E2_1813at 2145.518 kb on + strand, within Pf6N2E2_1813at 2145.836 kb on + strand, within Pf6N2E2_1813at 2145.837 kb on - strand, within Pf6N2E2_1813at 2145.837 kb on - strand, within Pf6N2E2_1813at 2145.837 kb on - strand, within Pf6N2E2_1813at 2145.837 kb on - strand, within Pf6N2E2_1813at 2145.841 kb on - strand, within Pf6N2E2_1813at 2145.900 kb on - strand, within Pf6N2E2_1813at 2145.940 kb on - strand, within Pf6N2E2_1813at 2145.962 kb on + strand, within Pf6N2E2_1813at 2145.963 kb on - strand, within Pf6N2E2_1813at 2146.478 kb on - strand, within Pf6N2E2_1814at 2146.478 kb on - strand, within Pf6N2E2_1814at 2146.737 kb on + strand, within Pf6N2E2_1814at 2146.738 kb on - strand, within Pf6N2E2_1814at 2146.738 kb on - strand, within Pf6N2E2_1814

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Per-strain Table

Position Strand Gene LocusTag Fraction No vitamins t1
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2,144,539 - Pf6N2E2_1812 0.33 -1.6
2,144,539 - Pf6N2E2_1812 0.33 +0.2
2,144,904 + Pf6N2E2_1812 0.68 -1.4
2,144,905 - Pf6N2E2_1812 0.69 -1.4
2,144,905 - Pf6N2E2_1812 0.69 -0.6
2,144,967 + Pf6N2E2_1812 0.75 -0.4
2,144,990 + Pf6N2E2_1812 0.77 -1.4
2,145,403 - Pf6N2E2_1813 0.18 -1.4
2,145,518 + Pf6N2E2_1813 0.30 +0.6
2,145,518 + Pf6N2E2_1813 0.30 -0.2
2,145,836 + Pf6N2E2_1813 0.62 -1.4
2,145,837 - Pf6N2E2_1813 0.62 +0.9
2,145,837 - Pf6N2E2_1813 0.62 +1.2
2,145,837 - Pf6N2E2_1813 0.62 +1.5
2,145,837 - Pf6N2E2_1813 0.62 +2.2
2,145,841 - Pf6N2E2_1813 0.63 +1.0
2,145,900 - Pf6N2E2_1813 0.69 -0.4
2,145,940 - Pf6N2E2_1813 0.73 -0.7
2,145,962 + Pf6N2E2_1813 0.75 -0.7
2,145,963 - Pf6N2E2_1813 0.75 +3.5
2,146,478 - Pf6N2E2_1814 0.19 -0.4
2,146,478 - Pf6N2E2_1814 0.19 -2.0
2,146,737 + Pf6N2E2_1814 0.37 -1.4
2,146,738 - Pf6N2E2_1814 0.37 +0.1
2,146,738 - Pf6N2E2_1814 0.37 +1.2

Or see this region's nucleotide sequence